RNA id: XM_036935500.1



Basic Information


Item Value
RNA id XM_036935500.1
length 7872
RNA type mRNA
GC content 0.50
exon number 21
gene id LOC110535714
representative False

Chromosome Information


Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 42631822 ~ 42836577 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AACTATGTGTTTCCATCTGATTCTGACTCCAATAGGGGTGATGATTTTTCTGCCCAGGCAGCCTGTGTGAACTTCACATGTATGGCAAGCGCAACGCTTCCGCTCCATCATTTACCGTTTGACCGCAACACAACACGTTTGTCATGAAATTCACACTTCAGGCGCACACATTCGCGGATGACGAAGATCCAGAAGATCTACACGAGCCCATGCGTCTTGTGCGGCTCATTGGCGCTGGAAACTGATCATAGTGGAAGTGCAGTATCTTCAGCCAACGGTGACATTCACGACGCCGTGCGCGCAGACTGGCAGGCTGCTGTACCGGCACTATGGAGGAGAAAAACAAGGACGATAACGCCACGAAGGGACAGGAATCGATGTCCTATCAACGGAGGATGTGGAAGAATTTTCAAGAAAAAACCAAACCGTTTTTGAGTCCCAAATTGGTCTCTGAACGTCGCAATCCCGACAGTAAAAAGGAGACGGGGTTATGGATGTTTAAAAGGAAAAAGAAACAGTTGGACCGTGTCTTTTCGTCCTCACAGCCCAATCTCTGCTCCTCTACCCCGTCGACTTTCCCGGGCGACCTGTCACTCGGCGGTACAGCGGTCCCTGGGAACAGCGACAACGGGCAACCTATGCAACAGCTGCTGGGTGCGGTTGGAGTGTCGGCAAGCAAGCCAGAGCTAACGGGACACGAGTGCCCGAAGCTCATCGTCTCCCATTTAATCATGTCCCACCAGAAGAGCTCCTCTCTCGGCTCTGCATGCTTCGAGAAGCTGGTAGTAAAATCTGCGGAcgttggagaggaggaacagCTCCGCAAAAACGCCAGTGATTCTGGCATCAACATCGTGGAGCCAAGTAATGCTGAGACCGCCCTTGTTACCAACCCAGGGATGTACCAGCTGGACATCATACTGAAGAAAGGACACAACCTCGCCATCAGGGACAGAGGAGGGACAAGTGATCCGTATGTGAAGTTTAAGATCGGTGGGAAGGAGGTGTTCAGGAGCAGGACTATCAATAAGAACCTGAACCCAGTGTGGGACGAGAAAGTCAGCCTGCTGGTGGACAGCCTCCGAGAACCCCTCTATGTCAAGGTGTTTGACTATGACTTTGGCCTTCAGGATGACTTCATGGGTTCGGCATACCTCTACCTGGAGTCCCTGGAACACCAGAGGAACCTGGATGTGACCCTTGACCTTGAGGACCCCCAGTACCCCGACCATGACCTGGGAACTCTAGACCTGGCAGTCACACTGTCGCCCAAAGAGGGAGACTTCAGGGAAGCTCAGCTGCATTCAAGTATGCGGTTGTCAGATGTCCACAGGAAAGCTCAGCTGTGGAGAGGTATAGTGAGCATCAGTCTGATTGAGGCTCGCGACCTCCAGCCTATGGACGCCAACGGCTTTAGTGACCCCTACGTCAAATTCAGACTGGGCCATCAGAAATACAAGAGCAAGACGATACCCAAGACTTTGAACCCCCAGTGGAGAGAGCAGTTTGACTTCCATCTGTATGAGGAGCAGGGGGGCTTCATCGACATCACCGTCTGGGACAAAGACGCAGGCAAGAAGGACGACTTCATGGGCAGgtgttCGGTTGACCTGTCTCCGCTGAGTAAAGAGCACACTCATAAGTTGGACGTACCGCTGGAGGAGGGCGAGGGAATGCTGGTGCTGCTGGTCACACTCACTGGGGCTGCAGCAGTGTCCATCTCGGACCTGTCGGTCAATATTCTGGATGACCCACACGAGAGACACCAGATACTACAGAGatatAGTGTGCTGAGGTCGTTCCACAACCTGAAAGATGTGGGTATGGTCCAGGTGAAGGTCATCAGAGCAGAGAGGCTGATGGCAGCAGACGTCACAGGCAAGAGTGACCCCTTCTGTGTGGTGGAGCTGAGTAATGATCGGCTACAGACACACACCGTCTACAAGAACCTCAACCCCGAATGGAACAAGGTCTTCACCTTCAACGTGAAGGACATCCACTCAGTGTTGGAGGTGACGGTGTACGACGAGGACCGAGACAGGAGTGCAGACTTCCTGGGGAAAGTGGCCATCCCTTTACTAAACATTCAAAATGGTGAACGGAAAGCCTACGCCTTGAAAAGCAAGGAGCTGACAGGGCCAACAAAAGGGGTCATCTTTCTCGAAATAGACGTGATTTTTAATGCTGTGAAGGCCGGTCTCAGGACGTTAATACCCATCGAGCAGAAATACATTGAGGACGAACCCAGAGTGTCCAAACAGTTGCTGCTGCAGAACTTCAACAGAGTGAGGAGCTGCATCCTGTTCCTCATCAACGCCGGCTGCTACATCAACAGCTGCTTCGAATGGCACTCGCCTCAGAGGAGCATCTGCGCCTTCCTGctcttTGTTCTCGTGGTGTGGAACTTTGAACTCTACATGATTCCTCTGGCTCTGCTGCTGCCGCTGGCCTGGAACTATATCCTTGTCGCTTCGGGGAAGGACACCAGGCAAGACGTGCAAGCGATGGAGGACTTgctggaggatgaggatgaggactATGAGAAAGATGACAAgGTGCCTAGGCCCGGCCATTCGGATGACGGCCGACTGCCTGAAAGCCATATCCTTGTGGATATGTTGGCTTCCTGGCACTTTGAGTGGATACGGGTGATGGTGGACCCGGAGAGAAAGGGCTTCATCAACAAGCTGTATGCCATCCAGGATGTGTGCATCAGTGTGCAGAATGCGTTGGATGAAGTAGCCTCCTACGGCGAGAGGATAAAGAACACATTTAACTGGACAGTGCCTTTCCTAAGCTGGCTGGCCATCGTTGCACTGTGTGTGGCCACTGTGCTCATCTACTATATCCCCCTACGCTACATTGTCCTGGCCTGGGGGGTGAATAAATTCACCAAGAAGCTCCGTGACCCGTACAACATTGACAACAACGAGCTCCTGGACTTCCTGTCCAGAGTCCCCTCAGATATACAAGTGGTGCAGTACCGAGAGCTGAAACTGGATCTCAGTCATAGTCCaaataaaagaaagaaaaacaaccCGGGGTAGCTGGCTTTGTCCGCCCACGGAATCTTCCCTCCCTCAACGGCCCGACACCGAGGAGCAGAGGAAGGCTGGTCTGGAcctcctcaactctctctctctctccttttttcatcttttcctctttctccctcttctacTGACtttatatatacatgtacagGCTCCCGAAGTGTAATTATCACTGTAGAAAGAGACAGCAAGAGAAAAATCGTAAATTCTGAGTTTAGAGATGAGCCTGGATGAAAGTGGACCGGACCATTCCAGACCCAGGTGTTTACAGCATTGTACCAGTCTGACAGATGTACAAGTCATGCTCAACTGTGTGACAGTTATGAATTCCCCCGTAAGGAACATATCATTTAACCCTATCATAGTCAGAAAGCCGCCAACCAGGTAGAATGGATGGTCTACTTTTCCAAATCTGAACTCCCAAATTACCTCTGGGTGTAAGCATGTGGAACAATAGATAAAGAGCgtatttattcattattttacaaaatgttgtaaatattttttgttgtatttACATTTTGGATTCAATTATTAtattttgaggggggggggggggggggggggggtattttaagAGGTCAAATGTTAATTGTCTCTTCAGTTCTTAGGCCTATATACATATCACCCTGTTCCAGTGGTCCTTGACTATCCAAATGAATGATAACTTCAAAACCTCAAAAATCCTCTTTTAAATGGAACCCGGGGACTGCTGCAGTCCTGCCGATATGCCATTCTTCCGGTCTTCACAACCATCAATAGCGCAGATCAGTGTTTTTCTACCCAGAAACAGGGTGTCGTTTCCCCCCAGAAGAGGCAGGCAAGTGTAGATCTCTGCTGTGCCACTGAGCTAATATAGATGTCACCCTGTGCAGACAGAATCGCCAGGCAGGCCTTAGGCAGCCCAAGCGGTAATCttatttgaaaggctggtctcctctcctctcatctccacaTGTTGCCTcagtgggcacacacacactctccaacaCTGTGCCACAGGCTGGCCGCCATCTCCATCTGCCCCACCTCCTGCTCAACTATGATCTCTCTTTCAAGGGACGAGTTTGTGaatacgtgtatgtgtgtgcatgtgtcccactgggcaaaaacagtTTGAATCAACGTTGCTTCCACGTCAGTTCAGCGCAAACAATGCTACGCGACGACGCCTAATCAACGTTGCTTCCACGTCAGTTCAGCCCAAACAATGCTACGCGACGACGCCTAATCAACGTTGCTTCCGCGTCAGTTCAGCCCAAACAATGCTACGCGACGACGCTGAATCAACGTTGCTTCCACGTCAGTTCAGCCCAAACAATGCTACGCGACGACGCCTAATCAACGTTGCTTCCGCGTCAGTTCAGCCCAAACAATGCTACGCGACGACGCTGAATCAACGTTGCTTCCACGTCAGTTCAGCCCAAACAATGCTACGCGACGACGCCTAATCAACGTTGCTTCCACGTCAGTTCAGCCCAAACAATGCTACGCGACGACGCCTAATCAACGTTGCTTCCACGTCAGTTCAGCCCAAACAATGCTACGCGACGACGCCTAATCAACGTTGCTTCCGCGTCAGTTCAGCCCAAACAATGCTACGCGACGACGCCTAATCAACGTTGCTTCCGCGTCAGTTCAGCCCAAACAATGCTACGCGACGACGCCTAATCAACGTTGCTTCCGCGTCAGTTCAGCCCAAACAATGCTACGCGACGACACCTAATCAACGTTGCTTCCACGTCAGTTCAGCCCACACAATGCTACGCGACGACGCCTAATCAACGTTGCTTCCACGTCAGTTCAGCCCAAACAATGCTACGCGACGACGCCTAATCAACGTTTCTTCCACGTCAGTTCAGCCCAAACAATGCTACGCGACGACACCTAATCAACGTTGCTTCCACGTCAGTTCAGCCCAAACAATGCTACGCGATGACGCTGAATTAACGTAGCTTCCAGGTCAGTTCAGCCCAAACAATGCTACGCGACGACACCTAATCAACGTTGCTTCCACGTCAGTTCAGCCCACACAATGCTACGCGACGACGCCTAATCAACGTTGCTTCCACGTCAGTTCAGCCCAAACAATGCTACGCGACGACGCCTAATCAACGTTTCTTCCACGTCAGTTCAGCCCAAACAATGCTACGCGACGACACCTAATCAACGTTGCTTCCACGTCAGTTCAGCCCAAACAATGCTACGCGATGACGCTGAATTAACGTAGCTTCCAGGTCAGTTCAGCCCAAACAATGCTACGCGACGTGGGAAAACTGATGGCTTTGCACAAAGTCGATCCACGTCAGGGAATTttcaacctaaatccaatgaccaGATGAAATGTTTGGTTGATTTCAGGTTAGTTGACAATTGAACCAAAGGTAAATCAAAggtagacgttgaactgacgtctctGCCCAGTGGGGGTGTTTATGCAAAGCAAACAagcaagctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgcgtgtgtgcgtgcatgctggGTGTGTATGCTACATGTGTGCACATGTAAATGTGCATGGGTGCATGTTTCTGGAGTCGTCTTGTCTCTTCTGGCTCTGGAGAGTGATGTGGATGGGACTGTGAACTTGTAGGGCCAGATGCTGCGTTTTGTTGGAGAGGTCGACCGTTAGACGAGCAGCCAGTTAGCCGCTGTGTGACAAGACACGACGACGGGTGGCCAGAGACAGCAGGGCTTTGCGCGTATGCGCGCGCGCACCCTCTTTCCAAAGCTATCCCAttatccctctcactctccctctctccctcgtcaGCGGTTAGGAACGTGGCCCTGTCTGAAGGGAACGTCTCCTGGGTGTCTCCCGAAAGCATCTGTTGAAAGATCACAGCGTAGGCTACATCTGAAGGGGCCTTCCACTCCTCCAcatacccctctccctccctccgtcctttACACTTCAACAAGTGTAGATCTGCCACTTTGGAAGGCCATTGGTTTGGTTTGTTTGAGAGATGCACTTGAAATACAATAACATGCTGCGTGGAATGTAGGACCTACACGGGTTATATCATCCTCTCTAAAATGCAGACTCGTGTCTATTTCTATTGCCTAAAGGGGACAGTTTGAAAACCTGAATATGTATGCGTGAACTACTGTACGTGGTATAATTTACAGTAACTGTGGTGGGTGGTATATTGTGTGTGGTCTTGTATCCAAATATTCTAAGTTTTATAACATTGTTTTGGCTATGTATGCAAGCAAACCAAAGTGATTTATTTGACGTGACTGAAAAGAAAAGCTCAACAGAATGTATCGGACGGGCATAAAGGAAAACGGCACTttcatttgccccccccccccccctttttttttttactcaacttTTTTTGGAATGATGTACATAATATGCTTGTAAATGGTCTAATGTCGGTTGATGATCTTGTATCGCTGTATGCTTGTCATTGCTCTCCGAGGTATTTTCGCCTGCTGTGTTGCCTGTGACATCATCTTCACTCTCCTAGTCCTGGCCAATGGTTGTCGAGGACAAGGACGGGGATTTGGGTTGGGTGGGGGCAGTAAAGGGAAAGTTATGAGAAAATAATGTGCATCTAATACGACCAATAAATTCACCAGATGTATGTCGATTATTTTGGAAAAACTTGTAAAAGATTAAATATTTTGTATCATCTTTGTAGATTTTTCATTCATTGCCAAAATGGCATTGAGCTTCACGAAGACAAATACATAGCCAGCTACACAAAAGGCTGGTCTGAAGTGCATACCACCCGGGAGGGCCCTTGAGGCCCCTGTGTGAATCCTCTGACGGGATCATTTATTAGTCTGGGAGTCCCTCCACTGTCTGAACCTCCTCCATCTAAACTCCTGTACATCACTCCTCACAGCCCCATAAATGACGACATGCGCACCCAGCCAGTGGTACTCCCCTCCACAAGAAGAGGTCAGGAAGGAACACTGGGCTATTAGTCTCTGCTCCTCTGACAAACACACATCATCCTCACATATCAGGTGTGATCGCTAGctccctctaacacacacaatcacaccctACAGTATAAGCCCATCTCTTTATTGAAGTTCCGCACTCAGGAAATAGTTTGTGTGGCCACGGCTAATTTTAGGATGTTCTTGAGCACCCAGAGGTGAGCTAGTCTTACTCCTGGTTACCCCCCCACGCCCCCTCTTCCATCTCTGTCCTGTGCCCCCAGCTCAGGACACTATGTGACCAAACACCCATCCGGGCTCAATAGATGCTTCCACTGCCAAACAGAAAGATAGACCtttggtgagtgtgtgtgcgtacgtgcctGTGCTGGTGCATGTTCAACTGACACGCACCTCAGTTTGTTGCCCTTTCAATTGCTCTGCAATCGAATGCTAAGCAGCATGGTTTCTCACAACGGTAGAACTGCTACTGGAAGCCCCAGTAGGTGATACTGCAGTGAGTTGTTGCTTATTTGAAAGACTCCTGACCCGTACCAGCCACTATAAAGAAGTGAACAGCCTTACAGGGTTAGAGGTTACTGTAGCTTTCCCTGCATGGGAGAAGACTATTTGGGGTAAGAGCATGGGTAGCTCTGCCAATATTATGTTGATCTGAGTCCTGTTGAGTCGTAGTTGAGTTGTTTGGAGATTCATCCTTCATTCCCTGTAACGGATTAAGCTCTTTATTAAAGTACTATTGTTATTGCTTA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU1116433 lncRNA downstream 63265 42568325 ~ 42568557 (-) True G980571
TU1116432 lncRNA downstream 63691 42567867 ~ 42568131 (-) True G980570
TU1116431 lncRNA downstream 64282 42567313 ~ 42567540 (-) True G980569
TU1116430 lncRNA downstream 64551 42566916 ~ 42567271 (-) True G980568
TU1116428 lncRNA downstream 67461 42564055 ~ 42564361 (-) True G980566
TU1116687 lncRNA upstream 26858 42863435 ~ 42864216 (-) True G980767
TU1116689 lncRNA upstream 29573 42866150 ~ 42866384 (-) True G980769
TU1116700 lncRNA upstream 41141 42877718 ~ 42877948 (-) True G980780
TU1116660 lncRNA upstream 55924 42892501 ~ 42893774 (-) True G980740
TU1116657 lncRNA upstream 71860 42908437 ~ 42909019 (-) True G980738
XM_021620901.2 mRNA downstream 40040 42425475 ~ 42591782 (-) False kiaa0825
XM_036935490.1 mRNA downstream 40040 42425475 ~ 42591782 (-) False kiaa0825
XM_036935495.1 mRNA downstream 206507 42179385 ~ 42425315 (-) True LOC110535712
XM_021620902.2 mRNA downstream 208641 42179385 ~ 42423181 (-) False LOC110535712
XM_021619906.2 mRNA upstream 72713 42909290 ~ 42916107 (-) True LOC110535024
XM_036935503.1 mRNA upstream 86597 42923174 ~ 42925634 (-) True LOC118937355
XM_036936618.1 mRNA upstream 101567 42938144 ~ 42958341 (-) True LOC110535716
XM_021620913.2 mRNA upstream 390301 43226878 ~ 43242918 (-) True LOC110535717
XM_036935504.1 mRNA upstream 546636 43383213 ~ 43458691 (-) False edil3a
TU1116163 other downstream 40054 42573261 ~ 42591768 (-) True kiaa0825
TU1116375 other downstream 68092 42473810 ~ 42563730 (-) True G980514
TU1114784 other downstream 1358395 41273089 ~ 41273427 (-) True G979041
TU1110540 other downstream 4553295 38077851 ~ 38078527 (-) True G975110
TU1110527 other downstream 4586911 38041406 ~ 38044911 (-) False G975103
TU1118823 other upstream 1772832 44609409 ~ 44609942 (-) True G982818
TU1119538 other upstream 2262911 45099488 ~ 45100219 (-) True G983486
TU1120247 other upstream 2769147 45605724 ~ 45606417 (-) True G984166
TU1121161 other upstream 3366132 46202709 ~ 46223081 (-) False LOC110535758
TU1121488 other upstream 3702956 46539533 ~ 46541954 (-) False G985191

Expression Profile


XM_036935500.1 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.5.
End of interactive chart.

XM_036935500.1 Expression in each Bioproject

Bar chart with 18 bars.
XM_036935500.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.