RNA id: XM_021620921.2


Basic Information

Item Value
RNA id XM_021620921.2
length 5473
RNA type mRNA
GC content 0.51
exon number 28
gene id LOC110535722
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 44119481 ~ 44178070 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTAAAATCACCATTGAAAGGGTCCCAATGTGTGGTTGGTTCTGAATTACTATTCAAAAGGTAACGCGTATCATACATGTGGCGTGCCACATTCATCGCGTGAATGGTATGATATTTCCCTCCTTTTAATGGAGGGATTGTAGTCTAATCCTGTGTCGAGACTGCTTTTCACTTCCTCACCACCGATAGCAGATATAATGGATGCAGCTCGCGTCGTGCAATTACTCGGTACTCTCTTGGCTGGGCCTGCGCTAGcagagtggggagagggagggagcgaataGCGGCGGCAGCAGCAAGCCTCCAGCCCCGTAATCGAGAAAGAAACGCGAATTTACGCAAGAACGAAGTGCTGTAATTTGTTCAGTTGGTGGGCTACATCGGCTAAACTAAGTCCACCAGAGGTTCAGGCGACAGAAGGGGCCGTTTGTGGTGGCAACCTAAGACATTTGGGAACTCCGTAGGAGCAAAACAACAACAGCACAATACAGGATTGCACACACAGGCAGTGACAATAAAATAATACTTACCGACAAGTAGACTGGTGGCTGCCGAGGGAGCAGGCAGGACTAGGGAAAAAAAAGGAATTAAATACGTCATCTGCCTCTCCCTTCAGTGAGGGGGTGCTGCAAGACTAGAGGGGAAGGGCAGGTTCCCTTCTCGACTTATTCCCCTCTACGTATTTTCCGAAAATGATGGCTGCGGAGGTCAGTAGCGAGGATACGGGCTCTGTCTCGGCAGGGAAAGGGGTGGCGAGCGGTGGAGGCCCAGAGACGGCCCATTTTCCGTTTTATCCCAACCCGACCAGAGTGCGGGTCACTGATTTGGGCCAGGGAGCTGCAACAAACCTCCGCCACCCGTTGAACACCTCCCCAGACTCCCCCCCTGATATAAGTATGATTTACCCCGTGTCTGGAGGAGATACTGCCGGACCTGCCTTGTCCGCTACAGGGAGTGGCGGACATGCAATTATTATAGGAACAAGTTCAGGGACCATTGGCAGTGTGTGCTACTCCCCCACCTCGGAGGGACCCGGCATCCGGATGTCACCCACCTCGGTGGGTCCCGACGGGTCAAGTGTCTTCCCCCCTCTGCCACCACCTCCCCCACCGCCCCCAGGCTACGGAGGACTCGGAACTGTGGATGAAAGCGACATGCAGGATGGACCTGAAtacgaggaagaggaggtggtctTCCCCCTCTCAGCGCCGCCCACGAACCAGTGGTACCATGGGAAGCTGGACCGGACCATTGCTGAGGAGCGGTTGCGGCAGGCCAGGACCCCCGGCAGCTACCTCATCAGGGAGAGTGACCGCCGGCCCGGCTCCTTTGTCCTGTCCTTTCTCAGCATGACCAGTGTGGTCAACCACTTCAGgataATCGCCATGTGTGGAGATTATTACATAGGCGGGCGGCGGTTCTCGTCCCTGTCGGACCTGATTGGTTATTACAGCTTTGTGTCTtgcctgctgaaaggtgaaaagCTGCTATCGCCCGTGGCACCCCCAGAACctgtggaggacaggaggagagtgaGAGCCATTCTTCCATACACCAAAGTGCCAGAGACCGATGAGATCAGCTTCCTGAAAGGGGACATGTTTATCGTTCACAATGAACTGGATGACGGCTGGATGTGGGTGACCAACGTGAGGACGGAGGAGCAGGGCCTCATTGTGGAGGAcctggtggaggaggtgGGACGGGAGGAGGACCCACACGAGGGCAAAGTTTGGTATCACGGCAAGATCAGCAAACAAGAGGCCTACAACTTGCTGATGACAGTTGGCCAAGTGTCCAGCTTCCTGGTCCGGCCGTCAGACAACACACCCGGGGACTACTCCCTGTTTTTTCGCACCAATGAGAACATCCAAAGGTTTAAGATATGCCCCACGCCCAACAATCAGTACATGATGGGGGGGAGATACTACAACAGTGTTGATGACATTATTGAGCATTATAAGAAAGAGCAGATCGTGGAGGGCTACAACCTGAAAGATGCTGTTTCAGTGCAGCAACAGGAACAAGTGCTTTCAGACTTGGTGGACGGCAAGGAGATCTATAACACTATCAGACGGAAAACGAAAGACGCCTTCTACAAAAACATTGTCAAGAAAGGCTACCTCCTATTCAACAAAGGCAAAGGCAAGCGGTGGAAGAACCTCTACTTCATCTTGGAGGGGAACGACGCCCAGCTCATCTACTTTGAGAGTGAGAAGAGGGCCACTAAACCCAAAGGCCTGATTGACCTGAGCGTGTGCTCGGTGTATGGCGTGCACGACAGTCTGTTTGGCAGGCCAAACTGTTTCCAAGTTGTCATCCAGCACTTTAGTGAGGAACAATACATATTCTACTTTGCTGGCGAGACCCCTGAACAGGCACAGGACTGGATGAAATGTCTGCAGACGTTCTGCAGTAACCTTAGGAAACCCACCCAGCCCACTCCCAACAAGAGGCTCCGACAGGTGAGCAGTCTGGTCCTGTACGTGGAGGAGGCCCACAAGCTGCCGGTGAAGCACTTCACCAACCCCTACTGCAACATCTACCTGAACAGTGTGCAGGTGGCCAAGACCCACCCTCGAGAGGGCCAgaacccagtcttcactgagGAGTTCATCTTTGATGACTTGTCGAGTGAAATCAACAGGTTTGAAATCAGCCTCAGTAACAAGACAAAGAAGAGCAAAGAAAGTGACATCTTATTCATGCGTTGCCAGCTGAGCCGACTGCAGAAGGGCCAGATGATAGACGAGTGGTTCCCTCTGAGCTCCCACGTGCCTCTGAAAGGCATCGAGCCGGGCTCCCTGAGGGTGCGAGCCCGCTACTCCATGGAGAAGATAATGCCTGAGGAGGAGTACAGCGAATTCaaagagCTGATCCTGCTGAAAGAGTTCCATGTGATCTATGCTCTGGCCCATGTGTGTGGGCAGGACCGCACCCTGCTGGCCAGCATCCTGCTGCGCATCTTCAGACACGAGAAGACAGAGGCCCCCTTACTCAGGACACTCAATGACCGAGAGATCAACATGGAGGACGAGGCGACAACCCTGTTCCGAGCGACCACGCTGGCCAGCACGCTGATGGAGCAGTACATGAAGGCCACGGCCACACCCTTCGTCCACCACGCCCTCAAAGACACCATCCTTAAGATCATGGAGAGCAAGCAGTCCTGCGAGCTGAATCCCTCAAAACTGGAGAAGAACGAGGATGTGAATCTGAACCTAGCCCACCTCCTCAACATCctgtctgagctggtggagaagaTCTTCATGGCTGCTGAGATCCTGCCCCCTGTAAATAGGCTATCATCTGTCATCGACGATGACGTCCCCATCGACGATGGCTGTCAATCATTATCGTCACCCGATGACATCATTCATCGGCCCAACCCTAATAAGACTCTAAGGTATATCTATGGGTGTCTGCAGAAATCAGTGCAGCAGAAATGGCCGACCAACACCACCATGAGAACCAGAGTCGTAAGTGGCTTTGTGTTCCTTAGACTGATCTGTCCTGCCATCCTCAACCCAAGAATGTTCAACATCATTGCTGACCCTCCCTCTGCAACAGCAGGCCGTACCCTCACATTGATTGCCAAGTCTGTCCAGAACCTGGCTAACCTGGTGGAGTTTGGTGCTAAGGAGCCCTACATGGAGGGTGTGAACCCCTTCATCAAAAACAACAAACATAGGATGATCATGTTTCTGGATGAGTTGGGGAATGTCCCTGACCTCCCTGAAGTTACAGAGCACTTTAGGACAGACCTGTCCCGTGACCTTGCAGCCCTGCATGAGATCTGTGTCTCTCACTCAGACGATCTCCGCACCCTGAGCAACGAGAGGGGAGCACAGCAGCACGTGCTGAAAAAGCTGCTGGCCATCACTGAGCTCCTTCAGCAGAAACAGGTTCACTATGCCATGTCCAACAGCAACAGGACCGAGTGCACCATCATGGCATTGGCTGCCACCATCCAGGTAATGTGAATTCTACAAAGACTGGACGGGTTGGTCAGTCAACCAAACCGCCATCAAGCCCTGGACCGGAGACTAGGTGAATTTGTATTGAGCATGTAGCTTTCTGGATGTGTCGGTCCACTATAGCTGACTGGATCTGGGAATCTCTTGCCAGTCCCAAAGCCCTGGAACAGACACTGGTGAAATAAGGAAGAACTCCTAACCCAATGCTAGGTTGAACTATATTCAAGCTGAGAGGGCCAGACTGACATGAACAGGACACGGCTAGCCTATTTTGCCAGTTATATTATAGCTTACAGACAGCTAAAGAAAACAGAACTGGATCACCTATATGTTGATTGGCTTGGCCTTTGTCCTGAAATTGGGAGGGGGCCTGACTTGAACCCTAGAGACACTGCCTTTTCAACAGTGGAACCTTCCCAGAGGGCCTCGGGGCAGCGGTGAGCCAAACCATCGTAGCGATAACAACGATCTTCAGGGAAATCTAACATAGCACCTCCAAGACACAAGCCTTAACACACACCACTTGATTTCACAACCCTAACTCCAAAATGGTAGTTTACAATTCACACTAGCTTcttatacaggtaactgccaaaatagtGGAAACCCCTGGGTAAATGAGGGTTCTGGAGGCTCTTGTGTGGGGTGCATTTTCCTGGCGTGGTCACAATGGTTTGATGAGCTTGTAAACGATGTAAGCCATGGtcggtcgtctcagtcaccagatatctgggagattctggagcggtgcctgagacagcgtttctaccaccaacaaaacaccaaatgatggaatttctcatggaagaatggtgttgcccccctccaatagagttccagatacttgtagaatctatgccaaggtcgCTATGAAGCTGGcggcttgtggtggcccaacgTCCTATTAAGACACTTGGGGTTATCTTTATTTTTTCAGTTACCTGTATATAGCACTGAAGCTACTAGCTATATCTTTTGTATGCTGCTTTGCCTGTTGTATGATAGCTTATCATACAAAATGTTAACCTAACAGTTTGTAAGAACTATTTGTAACATGTGCATGTATAACCCTATGGAAACTGCCGATGACTGggcctacatacagtatgtgctgcTCTGAGAAACTAAAGGAACTGAGAAATCCTCCCTTTATGCCTGGGCACATCAACTGAAGCTTTCATATATTTGCAACTTCAAATGTAACCCTCACTAACCCACTTTCCTTGGTGATAACAAGCCAACACCACACTGACCAAGATACTTGATTAATTTTGTGCAGGCCATATACAGATTCACCTCTCTGTCATTTGGATGAGAACTGGCTGACTTAGTACTGCTCATTCAAACCCCTCTAAAAGTCAGACTTAATTTAGATGCACTGAAGAGTATACAGACTTTACATACCTCACCCAAGTGTTCATAGACTTGATATGGGTGAGATTAAACCCCACTCTTCAAATATATAAAATGTCAGCTGTGCTTCATGGAGCGTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1118074 lncRNA upstream 64635 44030551 ~ 44054846 (+) True LOC110535720
TU1118073 lncRNA upstream 86849 44030551 ~ 44032632 (+) False LOC110535720
TU1117841 lncRNA upstream 292052 43827207 ~ 43827429 (+) True G981882
TU1117760 lncRNA upstream 368217 43751058 ~ 43751264 (+) True G981802
TU1117614 lncRNA upstream 477144 43642119 ~ 43642337 (+) True G981657
TU1118183 lncRNA downstream 53179 44231249 ~ 44231472 (+) True G982206
TU1118184 lncRNA downstream 55359 44233429 ~ 44233662 (+) True G982207
TU1118191 lncRNA downstream 62723 44240793 ~ 44241004 (+) True G982214
TU1118194 lncRNA downstream 70449 44248519 ~ 44248785 (+) True G982217
TU1118152 lncRNA downstream 77119 44255189 ~ 44256841 (+) True G982175
XM_021620919.2 mRNA upstream 86860 44030538 ~ 44032621 (+) False LOC110535720
XM_036936306.1 mRNA upstream 911477 43157632 ~ 43208004 (+) True LOC110535025
XM_021620910.2 mRNA upstream 1258038 42839548 ~ 42861443 (+) True fam81b
XM_021620907.2 mRNA upstream 1489750 42592009 ~ 42629731 (+) False slf1
XM_021620938.2 mRNA downstream 676432 44854502 ~ 44865316 (+) True LOC110535730
XM_036936307.1 mRNA downstream 711659 44889729 ~ 44895936 (+) True LOC110536623
XM_036936308.1 mRNA downstream 722047 44900117 ~ 44910458 (+) True LOC110535026
XM_036936310.1 mRNA downstream 815899 44993969 ~ 45004309 (+) True LOC110535028
XM_021620941.2 mRNA downstream 883168 45061238 ~ 45068208 (+) False LOC110535732
TU1117647 other upstream 404184 43660374 ~ 43715297 (+) True G981690
TU1115850 other upstream 1482772 42631824 ~ 42636709 (+) False G980019
TU1115777 other upstream 1586173 42528520 ~ 42533308 (+) True G979965
TU1115468 other upstream 2040626 42078492 ~ 42078855 (+) True G979689
TU1114082 other upstream 3103393 41003076 ~ 41016088 (+) True G978396
TU1118214 other downstream 102855 44280925 ~ 44285969 (+) True G982236
TU1119620 other downstream 1205337 45383407 ~ 45413082 (+) True LOC110535735
TU1120571 other downstream 1929850 46107920 ~ 46109940 (+) True G984422
TU1121569 other downstream 2429322 46607392 ~ 46607681 (+) True G985257
TU1121722 other downstream 2669633 46847703 ~ 46875441 (+) True G985387

Expression Profile