RNA id: XM_036936308.1


Basic Information

Item Value
RNA id XM_036936308.1
length 1242
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC110535026
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 44900117 ~ 44910458 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGAGGAGCAGAAAAAAACCACAAGGCCCAACTGACAGTGTTTCACCTCACATCATCTCTGCTCCAACTAAACACAATTATCTTCAGGTTCAATAGAGGACACATCAGAATCATCATAGACATGTCCCTAGGCTTTGTGGTCATTCTTTATTCACTTTATTTAATGTCCGTGGCAGGGCAGAAATTGGACCAGGAGATATCATGGACTAGGACACAGGGACAGGCTGTCTCCTTCAGCTGCAAAGATACTTACCAGTGTACAACGTTTGTCTACTGGTACCAGAAGAAGGAGGGAGAACCTTTTACCTTGATTCTTGACATCCAAAAGGATAACTGCGCTGTCGATGCAAGTTACAACCATCCTCAAAAAGATGACTTCTCAGCAACAAGTATGAATAACAACTGTGATCTAAAAATCCAGTCTGTTAAAGTCTCCCATTCTGCCACCTACTACTGTGCCTGCTGGAACACTGTGTATGGATTTGTATTTGGCTCTGGCACAAGACTTTATGTGACAGACAACAAGCATGTACAAAAACCCAAAGTGACGGTCTACCCAGCGTCCAACCCTGAGCCGAATGGGAAGACCACCCTGCTATGTCTGGCAAGAGACATGTTTCCAGACTTAGTCAAGATCTCATGGAAGATGGAGGATGAATACAGCAGAACAATGGAGGTGGCCAAAGCAGAGACGGAACAGCTGGAGCAGAGGGAGGAAGGACAGACGACCAGTATGATCATCATTGATAAAGAGAAGATGTACAGGAACAAATACATCTGTTCTGTGGAGCATGAATGGGGCATTCAAGATGTTGACATACCAAGGGATTCCTTCCCCTTCATGTGCAGTCTGAACCTGGCCTCTCTGGTTTATACAGTGATGATAGTAAAGAGCATGGTGTACTGCTGTgggctctctctcctgctgcaccACAGGAACATGGGGAAGTGGACACAACACCTGTAGAAAGGCTACCACCCAGTATGGATAAAGATGTAGTAGGCTGGGAGTAACATGGATTTTACATCCTATTGAGGTCTAACATCTCAATTGTTGGCCTATTGCCTTAATTTTTTTAACTTTATTTTTCAGATGCTAAAATATTGTGAGCCATAGATTTCCATGTCTTCCGATAACTTAAAAGGACAATTATGACATTAATTGCAGAACATTTCATGTAAATTGTGTTTCATTGCTTAAAATAAAAATTAAGCCTAATATTGCATTTTTTTATAACTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1118987 lncRNA upstream 83942 44725514 ~ 44816175 (+) True G982978
TU1118962 lncRNA upstream 193676 44706180 ~ 44706441 (+) True G982954
TU1118939 lncRNA upstream 206741 44692979 ~ 44693376 (+) True G982931
TU1118917 lncRNA upstream 220270 44679610 ~ 44679847 (+) True G982909
TU1118865 lncRNA upstream 249153 44650686 ~ 44650964 (+) True G982858
TU1119293 lncRNA downstream 52816 44963274 ~ 44963596 (+) True G983276
TU1119304 lncRNA downstream 58292 44968750 ~ 44968974 (+) True G983286
TU1119415 lncRNA downstream 135484 45045942 ~ 45046260 (+) True G983391
TU1119449 lncRNA downstream 147934 45058392 ~ 45075192 (+) True LOC110535732
TU1119475 lncRNA downstream 170746 45081204 ~ 45081443 (+) True G983435
XM_036936307.1 mRNA upstream 4181 44889729 ~ 44895936 (+) True LOC110536623
XM_021620938.2 mRNA upstream 34801 44854502 ~ 44865316 (+) True LOC110535730
XM_021620923.2 mRNA upstream 722047 44119481 ~ 44178070 (+) False LOC110535722
XM_036936310.1 mRNA downstream 83511 44993969 ~ 45004309 (+) True LOC110535028
XM_021620941.2 mRNA downstream 150780 45061238 ~ 45068208 (+) False LOC110535732
XM_021620940.2 mRNA downstream 150780 45061238 ~ 45073663 (+) False LOC110535732
XM_021620939.2 mRNA downstream 153302 45063760 ~ 45073663 (+) False LOC110535732
XM_036935522.1 mRNA downstream 279388 45189846 ~ 45413053 (+) False LOC110535735
TU1118214 other upstream 614148 44280925 ~ 44285969 (+) True G982236
TU1117647 other upstream 1184820 43660374 ~ 43715297 (+) True G981690
TU1115850 other upstream 2263408 42631824 ~ 42636709 (+) False G980019
TU1115777 other upstream 2366809 42528520 ~ 42533308 (+) True G979965
TU1115468 other upstream 2821262 42078492 ~ 42078855 (+) True G979689
TU1119620 other downstream 472949 45383407 ~ 45413082 (+) True LOC110535735
TU1120571 other downstream 1197462 46107920 ~ 46109940 (+) True G984422
TU1121569 other downstream 1696934 46607392 ~ 46607681 (+) True G985257
TU1121722 other downstream 1937245 46847703 ~ 46875441 (+) True G985387
TU1121736 other downstream 2012481 46922939 ~ 46923827 (+) True G985401

Expression Profile