RNA id: XM_036934620.1


Basic Information

Item Value
RNA id XM_036934620.1
length 3215
RNA type mRNA
GC content 0.45
exon number 15
gene id chek2
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 45957602 ~ 46060717 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGGTGGCTACTAGCTGGCATGAGGACGAAAAGGACACTCTTTTCCGTAAAAACTAGAAGTATctatctggggcggcagACTGACTGAGGAGAAATATTGACCATGTCCCAGGAGAAGCCAGATGCTGGCAGCCAGACACAGTCGCAGCCTCAGACTCAGTCCCAGAGTGGCTCCAGCTCCTCCTCTGGGTCAGGCACTGTCAGCTCAGTGGACACCATCCCTGTTAGGGACCTTGGCTCCATACCAGAAGAGCCTGAGCCACAGCCATGGGGTCGCCTGCTGCCTATGCAGAGAGGCTTCAGAGCCCACGACTGTGTTGAGGACGACACTTGGTTTGGCCGGGACAGTAAATGTAACTATTGCTTTGATGACCCCATACTGAAGAAATCGCCCAGATTTGCTACGTACAGCAAAAAACACTTCCGAATATTCCGAGAGCAGAACATTGTCTATGTCTTTGACAACAGTGGCAATGGCACGTTTGTTGACGGTACAATTCTTGGGAAAGGAAAAACATTGCCTCTAGCAAACAATGCGGTGCTGTCCCTAGCTGAGGAACGCCATAAAGTGTTTGTGTTCATTGATCTCATGGCGGATGAACAGTCCAACCTCCCCAAAGAGTTCAGTGAGAAATACCTGATTACCAGAAAGATTGGAGCTGGTGTGTGCGGGGAAGTGAAGCTGGCCTTTGAGAGGGCCACTTGCAAAAAGGTGGCTGTGAAGACCATCAACAAGAAGGACTTCCCAGCATCCGTCGGCACTGCCACACGAAATGCGGAACGAGAGATCCAGATCCTCCAAAGGATAAACCATCCATGTTTGATCAAAACAGAAGACTTCTTCCAAACAGACGACTCATACTACATTGTTTTAGAGCTCATGGAGGGCGGGGAACTCTTTGATAGGGTCAAAAGCAAGAACCAGATAGAGGAGTCAATTGCCAAGCTCTATTTCTACCAGATGTTGAAAGCAGTAGAGTATCTTCACAACAATGGCATCATCCACAGAGACCTCAAACCTGAAAATGTGCTGCTTTCGTCTCAGGATGATGTTTGTGTCATCAAGATCACAGACTTTAATCAGTCCAAGATACTGGAGGAGTCTGCCCTGATGAGGACCCTTTGTGGAACACCCACATACCTTGCACCTGAGGTGTTCACCGACGCAGTCACCGTGGGCTACAGCAGAGCCGTAGACGCCTGGAGTTTAGGGGTCGTCCTGTTTGTGTGCTTGGCAGGCTATCCCCCGTTCCACCCTAATGCACAAACGGGTTTGTCAGTCAGGGATCAGATCACGCAGGGAATTTATACATTTATTCCATCCAAATGGGACGGCATCTCGGATGATGCGAAAGATGTCGTGAAGAGGCTGCTTGTAGTGGACCCCAATGCCCGCCTCACCATTGAGGAGGCTTTACACCATCCCTGGCTGATGGATGAGGCCATGAAGGAGACTGCTGAATGCATCATGTACCCCAAGGACTCCGGAGATGCCACAGCGGCTGATGCCACAGCAGACTCCGTAGACACCACAGTAGCTTCAACTACAAAGAGGTCAagagaagatgatgatgatgatgatgagcagCAGCCGGCAAAGAGGAGACCAGGCCCATCCACAGAGGCAACATGAGTCACATTTCATCCTCATCACCACATTGGAGACCCCTCCCCCCCAGGTAGTTTTCCACCGGCAATTTGGCCCCCTGGAAATCTACCAGTATATTGTATTTTATCACACTTCTATTGCTACATTTCCATTAACTTGTCAAATGATTTTAGAACGTTCGAATAGAAAAATAGATGCGACAATTGCCTGCTGCGGTGCGTTTCCATTGAACTCTTTTGACGATAGAAACAGCTATATGTAATGGTCACACATACAAAAAAAACGTTTATAATAAAACATTAAGTGTTTCCATTAATAAATTGGCCACAGCCTGTATTCCCTCCCACCTATATGTTTTATGTCTCAGGTAGCCTGCAAAAgccagcatggatagaatgcaaGAATTGCCATATTTTAATAATTCTCATGTGCCAACATATCACCATGGTGAAACTTGCATCCAGCCAACCAGAATAGCATTCAGGCTTTCTTGAAAGTACAGACAATTGTCCTGCAAAGAAACATAATTTTTATAGTTGAAAAACAGATTGAGCAAGCAGTAGGCATTTCGAATTAAATGTGAAGTGGAGCTTCCAAATTCGGCAATCGTCATTTATTCGAAAAACAACTTTTCCATCAAGTTCGAGAAACGTCAAATCCACCCGTCGAAACAGATAAAAATGTTGATCTTTAGAAGATGTCATCTATAGCTGCCGTTTCCATTACATCATGGTGCAATCATCTGAAATGTACTTGATTAACGTtactatacactgaacaaaaatataaacgcaaccatttgattttactgagttagttcatataaggaaatcagtcaattgaaatgaggttctaatctatggatttcacatgactgggaatagagatatagatctgttggtcacagatacctttagaaatatgggcctcaggatctcgtcacagtggctctgtgcattcaaattgctatcaatacaattttattttgtttgttgtccgtagcttatgtctgcacataccataaccccaccgccaccatggggcactgttcACAACTGCTCGCCCagacgacgccatacacgtggtctgcggttgtgaggccggttggacgtactgctaaattgTCTAAAACGGAGGTGGCTTTTGGTAGAGAAAGTcatattcaattctctggcaacagctctggtagacattcctgcagtcaccatgCTAATTGCGTGCTCCCTCaacggcattgtgttgtgtgacacaacagcacattttggagtggccttttattgtccccagaacaaggtgcacctgtgtaatgatcatgctgtttaatcagcttcttgatatgccacaactgtcaggtggatggattatcaacACATTTGAGGGAAATAAtacttttgtgcgtatggaacatttctgggatcttttatttcagctcatgaaacatgggaccaacacttcacatgttgcgtttatatttttcttcagtgtacATGTTGATTTCCAACTTGTGGGCACATACTGAGCTATGTCTACTGGAAATGTCCTCCTGTTTTGTAAATAATTGTCTTTGTACAGCTACTGTTGAATAAACAAACATTTTCCACTGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1120408 lncRNA upstream 42002 45889438 ~ 45916391 (+) True G984310
TU1120406 lncRNA upstream 63166 45890752 ~ 45895227 (+) True G984309
TU1120393 lncRNA upstream 90121 45868022 ~ 45868272 (+) True G984299
TU1120311 lncRNA upstream 91642 45865124 ~ 45866751 (+) False LOC110535740
TU1120312 lncRNA upstream 93033 45865124 ~ 45865360 (+) True LOC110535740
TU1120469 lncRNA downstream 4825 45971448 ~ 45987832 (+) True G984342
TU1120493 lncRNA downstream 42052 46008675 ~ 46017778 (+) True G984361
TU1120487 lncRNA downstream 43814 46010437 ~ 46012718 (+) True si:dkey-98f17.5
TU1120548 lncRNA downstream 101381 46068004 ~ 46069268 (+) True G984406
TU1120600 lncRNA downstream 169059 46135682 ~ 46136223 (+) True G984439
XM_021620966.2 mRNA upstream 71498 45870829 ~ 45886895 (+) False pomt1
XM_021620963.2 mRNA upstream 71498 45871596 ~ 45886895 (+) False pomt1
XM_021620967.2 mRNA upstream 71498 45871598 ~ 45886895 (+) False pomt1
XM_021620965.2 mRNA upstream 71498 45871832 ~ 45886895 (+) True pomt1
XM_021620962.2 mRNA upstream 93032 45820438 ~ 45865361 (+) False LOC110535740
XM_021620975.2 mRNA downstream 26565 45993188 ~ 46011735 (+) False si:dkey-98f17.5
XM_021620984.2 mRNA downstream 161614 46128237 ~ 46133048 (+) True p2rx2
XM_036935533.1 mRNA downstream 196396 46163019 ~ 46203981 (+) False LOC110535755
XM_036935535.1 mRNA downstream 196396 46163019 ~ 46203981 (+) False LOC110535755
XM_036935537.1 mRNA downstream 196396 46163019 ~ 46203981 (+) False LOC110535755
TU1119620 other upstream 545311 45383407 ~ 45413082 (+) True LOC110535735
TU1118214 other upstream 1672424 44280925 ~ 44285969 (+) True G982236
TU1117647 other upstream 2243096 43660374 ~ 43715297 (+) True G981690
TU1115850 other upstream 3321684 42631824 ~ 42636709 (+) False G980019
TU1115777 other upstream 3425085 42528520 ~ 42533308 (+) True G979965
TU1120571 other downstream 141297 46107920 ~ 46109940 (+) True G984422
TU1121569 other downstream 640769 46607392 ~ 46607681 (+) True G985257
TU1121722 other downstream 881080 46847703 ~ 46875441 (+) True G985387
TU1121736 other downstream 956316 46922939 ~ 46923827 (+) True G985401
TU1121954 other downstream 1284689 47251312 ~ 47252236 (+) True G985597

Expression Profile