RNA id: NM_001159337.1


Basic Information

Item Value
RNA id NM_001159337.1
length 1530
RNA type mRNA
GC content 0.51
exon number 14
gene id chek2
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 45957602 ~ 46060717 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTCCCAGGAGAAGCCAGATGCTGGCAGCCAGACACAGTCGCAGCCTCAGACTCAGTCCCAGAGTGGCTCCAGCTCCTCCTCTGGGTCAGGCACTGTCAGCTCAGTGGACACCATCCCTGTTAGGGACCTTGGCTCCATACCAGAAGAGCCTGAGCCACAGCCATGGGGTCGCCTGCTGCCTATGCAGAGAGGCTTCAGAGCCCACGACTGTGTTGAGGACGACACTTGGTTTGGCCGGGACAGTAAATGTAACTATTGCTTTGATGACCCCATACTGAAGAAATCGCCCAGATTTGCTACGTACAGCAAAAAACACTTCCGAATATTCCGAGAGCAGAACATTGTCTATGTCTTTGACAACAGTGGCAATGGCACGTTTGTTGACGGTACAATTCTTGGGAAAGGAAAAACATTGCCTCTAGCAAACAATGCGGTGCTGTCCCTAGCTGAGGAACGCCATAAAGTGTTTGTGTTCATTGATCTCATGGCGGATGAACAGTCCAACCTCCCCAAAGAGTTCAGTGAGAAATACCTGATTACCAGAAAGATTGGAGCTGGTGTGTGCGGGGAAGTGAAGCTGGCCTTTGAGAGGGCCACTTGCAAAAAGGTGGCTGTGAAGACCATCAACAAGAAGGACTTCCCAGCATCCGTCGGCACTGCCACACGAAATGCGGAACGAGAGATCCAGATCCTCCAAAGGATAAACCATCCATGTTTGATCAAAACAGAAGACTTCTTCCAAACAGACGACTCATACTACATTGTTTTAGAGCTCATGGAGGGCGGGGAACTCTTTGATAGGGTCAAAAGCAAGAACCAGATAGAGGAGTCAATTGCCAAGCTCTATTTCTACCAGATGTTGAAAGCAGTAGAGTATCTTCACAACAATGGCATCATCCACAGAGACCTCAAACCTGAAAATGTGCTGCTTTCGTCTCAGGATGATGTTTGTGTCATCAAGATCACAGACTTTAATCAGTCCAAGATACTGGAGGAGTCTGCCCTGATGAGGACCCTTTGTGGAACACCCACATACCTTGCACCTGAGGTGTTCACCGACGCAGTCACCGTGGGCTACAGCAGAGCCGTAGACGCCTGGAGTTTAGGGGTCGTCCTGTTTGTGTGCTTGGCAGGCTATCCCCCGTTCCACCCTAATGCACAAACGGGTTTGTCAGTCAGGGATCAGATCACGCAGGGAATTTATACATTTATTCCATCCAAATGGGACGGCATCTCGGATGATGCGAAAGATGTCGTGAAGAGGCTGCTTGTAGTGGACCCCAATGCCCGCCTCACCATTGAGGAGGCTTTACACCATCCCTGGCTGATGGATGAGGCCATGAAGGAGACTGCTGAATGCATCATGTACCCCAAGGACTCCGGAGATGCCACAGCGGCTGATGCCACAGCAGACTCCGTAGACACCACAGTAGCTTCAACTACAAAGAGGTCAagagaagatgatgatgatgatgatgagcagCAGCCGGCAAAGAGGAGACCAGGCCCATCCACAGAGGCAACATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1120408 lncRNA upstream 42903 45889438 ~ 45916391 (+) True G984310
TU1120406 lncRNA upstream 64067 45890752 ~ 45895227 (+) True G984309
TU1120393 lncRNA upstream 91022 45868022 ~ 45868272 (+) True G984299
TU1120311 lncRNA upstream 92543 45865124 ~ 45866751 (+) False LOC110535740
TU1120312 lncRNA upstream 93934 45865124 ~ 45865360 (+) True LOC110535740
TU1120460 lncRNA downstream 392 45965434 ~ 46060717 (+) True chek2
TU1120469 lncRNA downstream 6406 45971448 ~ 45987832 (+) True G984342
TU1120493 lncRNA downstream 43633 46008675 ~ 46017778 (+) True G984361
TU1120487 lncRNA downstream 45395 46010437 ~ 46012718 (+) True si:dkey-98f17.5
TU1120548 lncRNA downstream 102962 46068004 ~ 46069268 (+) True G984406
XM_021620966.2 mRNA upstream 72399 45870829 ~ 45886895 (+) False pomt1
XM_021620963.2 mRNA upstream 72399 45871596 ~ 45886895 (+) False pomt1
XM_021620967.2 mRNA upstream 72399 45871598 ~ 45886895 (+) False pomt1
XM_021620965.2 mRNA upstream 72399 45871832 ~ 45886895 (+) True pomt1
XM_021620962.2 mRNA upstream 93933 45820438 ~ 45865361 (+) False LOC110535740
XM_021620975.2 mRNA downstream 28146 45993188 ~ 46011735 (+) False si:dkey-98f17.5
XM_021620984.2 mRNA downstream 163195 46128237 ~ 46133048 (+) True p2rx2
XM_036935533.1 mRNA downstream 197977 46163019 ~ 46203981 (+) False LOC110535755
XM_036935535.1 mRNA downstream 197977 46163019 ~ 46203981 (+) False LOC110535755
XM_036935537.1 mRNA downstream 197977 46163019 ~ 46203981 (+) False LOC110535755
TU1119620 other upstream 546212 45383407 ~ 45413082 (+) True LOC110535735
TU1118214 other upstream 1673325 44280925 ~ 44285969 (+) True G982236
TU1117647 other upstream 2243997 43660374 ~ 43715297 (+) True G981690
TU1115850 other upstream 3322585 42631824 ~ 42636709 (+) False G980019
TU1115777 other upstream 3425986 42528520 ~ 42533308 (+) True G979965
TU1120571 other downstream 142878 46107920 ~ 46109940 (+) True G984422
TU1121569 other downstream 642350 46607392 ~ 46607681 (+) True G985257
TU1121722 other downstream 882661 46847703 ~ 46875441 (+) True G985387
TU1121736 other downstream 957897 46922939 ~ 46923827 (+) True G985401
TU1121954 other downstream 1286270 47251312 ~ 47252236 (+) True G985597

Expression Profile