RNA id: XM_021620975.2


Basic Information

Item Value
RNA id XM_021620975.2
length 2449
RNA type mRNA
GC content 0.46
exon number 12
gene id si:dkey-98f17.5
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 45993188 ~ 46012718 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTAGACGTCAATTTGACAACTGTATTCAATCTAGCCGTAACCTCATCTAAAACGCAAATGGTTCTATCTGTGAGCAAATCATAGACACTGTGCATCACCGTAAACGTTCCCCCTGTCATTTTAAAGATGGTGGAAGGTAGTTCTACAACTGTCATGTCGGGCGGTAGAAAGCCCCGTTCTGTGGCAAACCCTCTGGAATCCGCGATCACCACACCCAGTGAACGAatcttgagagaatgccacaATTTATATATCGACAGCGAAAACGggctGGTGAAGATATCAAGCCGACTGGGTCTCCGGCTCCTTCCTCCACGGAAGAAGATCATTGTGATGATAATGGGGAACCACTCTGCTGGAAAAAGCTCATTTATTAATTGGTATGTGGAAGAACATATACAGAAAACAGGCGTTGCCATAGAAACGCAGGGATTTACGTTTATAACAAGTGGTCGGAAAAGAGAATCGCTGACGGGAAATGCCACGCTCCATCTCTACCCCCATTTCCGACCACTCCTGGAGTTTAAAGGTGTTACGGACTATCTGTCGGCTGAGATCTCCACCTCCAAGCAGAAGAAGTTTAGTCTGGTGACGTTCGTGGACACACCGGGCCTGGTGGATGGGGACATGGTCTATCCCTTTGATGTCAACCGCGCGATCACCTCGTTTGGGGAGCAGGCGGACCTGGTCTTTGTGTTCTTCGACCCTATGGGCCAGGCGCTGTGCAAACGCACGCTCAACATTGTGGAGAAGCTGAGCGATAAAGTTGCGGACAAGCTGCGCTTCTACCTCAGCAAGGCAGATGAAGCCGGGagggagacggacagacagCGTGTCATGATGCAGATAGTTCAGGAACTGTGTCGCCGACCGGGGCTGAACAAGTGTGGCTTTGAGATGCCCACCATATACATCCCTAACCCCCAGAAGCCGAGCCGGTGTGTGAACCAGATCGACGGAGTGTGTCAGACGATAGAGAAGACCATCAACCAGGCCGTCCAGAAGACACTGGACCAGCTGGAGAAGGACTGTGACCTCATCTCCTCCACAATCGACAGCAAATTGTCCCAGGACAGGGCGGACGTGAGTTTCAACAGCAGTGTCCGTCTGCACTCCTTCCTGTGTGGGGCACTGGGCATCCTACTGCCGTGCCTTTTCATCCTCAGCTTCGTCGTCAACACCCTGACTCCAGAGGAGCTGCAGGAGCTGCTGGGAGATGGGCTGGCCAAAGCCCTTGGGCTCTCCATGGGTGTAGTTGTCTTTCTGTGGACCTGGATACCAGAGGATTTCCAGATATTGTTTGTGATCATATTTGGTGTACTCTGCTACTTTTTCTTTTGTCTTGCCAAATATTTTGCCCGCCAAGGGAATAGGACTCTTAcgaagaaggagaagagaagccTCACAGAGTACAGCGATTACGTCCAGGATGTCGTCAAAGCCAAGAAGGGAAAACTATACGAGGAGTATCTCGCGCAGTGTGCTGCTGAATATGACTTCTGATAAGGGGCGGGCGGATCCATCGGAAATCTACATGCCGGACTTTCTCCTTGATTGTTATGTAGGACGTCTTCGTAAGTCTTTTCCTAATCACACTGATCAAGGGCTCACATGCCTAGGATTGCACAATTTGGGAAGCTTTCTGGTACATTTATATGCCACTGGGCGGAGGGAGAAGTATTTATTTCTGTAATAAAACtctttctgattggctgggcctggctccacagtgtgtgggcctatgccctcccaggcccacccatggctgcgcccctgcccagtcctGTGAAATCTgtagattatggcctaatttatttatttctattGACTGATATCCTTATACCAACTACAACtgagtcaaatctttgaaattgttgcattttgctttcatatttttgttcagtgtataactCAATTTGTGAGATACAGTATATAACTGTGAGAGAAATATAAAGTGCCTTTTCTATTTGGAAAACTGTGATTTAAGAAGTATCTCAATCTGAAATTTCTCGTGACTTTTTCAGGATGTGTATGTATTTACATCTGAAAGCATGTATGGGACTGTTTACTTGTTTATAGGCTACCTTTCTTAAATGACTCTCTTAAGCTAAAAAGCAAACAATTTGCTGGCAGGTGTTTCTTGATGTCTTTTTTTGAAACATCTTAGATTCTAATGTTTGAACGTGCTTGGGGGATCCTTTGACATTTTGTAATGAATATGTTGTATTACAAACTACAGTATCAATAGAAGTGTCTATTCTGGacaataattattatttattttttctatgGGAATGCAAAGGTAGAGATGATCATGACGTGAGAAcactgtgtgtgtggcagggaATGCTATTTTATGGCAATATATGGAGACACACCAACTCTATTTTAAAAGGCCAGACTTTTTTTTACCAGACTGCttccacatggttagcaaatTAAATAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1120469 lncRNA upstream 5356 45971448 ~ 45987832 (+) True G984342
TU1120408 lncRNA upstream 76797 45889438 ~ 45916391 (+) True G984310
TU1120406 lncRNA upstream 97961 45890752 ~ 45895227 (+) True G984309
TU1120393 lncRNA upstream 124916 45868022 ~ 45868272 (+) True G984299
TU1120311 lncRNA upstream 126437 45865124 ~ 45866751 (+) False LOC110535740
TU1120548 lncRNA downstream 56269 46068004 ~ 46069268 (+) True G984406
TU1120600 lncRNA downstream 123947 46135682 ~ 46136223 (+) True G984439
TU1120647 lncRNA downstream 211972 46223707 ~ 46223979 (+) True G984482
TU1120659 lncRNA downstream 267955 46279690 ~ 46280165 (+) False LOC110535759
TU1120660 lncRNA downstream 269787 46281522 ~ 46282065 (+) True LOC110535759
XM_036934617.1 mRNA upstream 26565 45957602 ~ 45966623 (+) False chek2
XM_036934618.1 mRNA upstream 26565 45957683 ~ 45966623 (+) False chek2
XM_036934619.1 mRNA upstream 26565 45957848 ~ 45966623 (+) False chek2
XM_036934620.1 mRNA upstream 26565 45958393 ~ 45966623 (+) False chek2
NM_001159337.1 mRNA upstream 28146 45959294 ~ 45965042 (+) False chek2
XM_021620984.2 mRNA downstream 116502 46128237 ~ 46133048 (+) True p2rx2
XM_036935533.1 mRNA downstream 151284 46163019 ~ 46203981 (+) False LOC110535755
XM_036935535.1 mRNA downstream 151284 46163019 ~ 46203981 (+) False LOC110535755
XM_036935537.1 mRNA downstream 151284 46163019 ~ 46203981 (+) False LOC110535755
XM_036935538.1 mRNA downstream 151284 46163019 ~ 46203981 (+) False LOC110535755
TU1119620 other upstream 580106 45383407 ~ 45413082 (+) True LOC110535735
TU1118214 other upstream 1707219 44280925 ~ 44285969 (+) True G982236
TU1117647 other upstream 2277891 43660374 ~ 43715297 (+) True G981690
TU1115850 other upstream 3356479 42631824 ~ 42636709 (+) False G980019
TU1115777 other upstream 3459880 42528520 ~ 42533308 (+) True G979965
TU1120571 other downstream 96185 46107920 ~ 46109940 (+) True G984422
TU1121569 other downstream 595657 46607392 ~ 46607681 (+) True G985257
TU1121722 other downstream 835968 46847703 ~ 46875441 (+) True G985387
TU1121736 other downstream 911204 46922939 ~ 46923827 (+) True G985401
TU1121954 other downstream 1239577 47251312 ~ 47252236 (+) True G985597

Expression Profile