RNA id: XM_021620984.2


Basic Information

Item Value
RNA id XM_021620984.2
length 1778
RNA type mRNA
GC content 0.46
exon number 12
gene id p2rx2
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 46128237 ~ 46133048 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAACAAGTCACTCAGGACCTCATATCTGAACAGACAGCTAATAAACTCAGAAATCACAATGGGACTGCTTGAGTTTATTAAGGATTATTTTCTTGGTTTCTGGGACTATGAGACCCCCAAGGTAATGGTggttaaaaacaaaaaacttGGAGTCATATATAGGGGGGTTCAATTTCTTGTGATCACCTATTTCATCTGGTATGTCTTTATCAGTCAGAAAGCCTATCAGGACAGTGAGACGAGGCCAGAGAGCTCAGTCTACACTAAGATGAAAGGCACAGCCCTGCAGGGTGACCACATCCTGGACATGGTGGAATACGTCCGACCCTCAGAGGGCGGTGACGTGATCAGCACAATACTGAGACGAGAGGTCACACACAATCAGAGGCAAGGCACGTGTGCTGAGcatttcactgttcccAGTGCCAACTGCTCAAAGGATGCTGACTGCACCTCAAGGGAAGTGAACTTTGATGGCAATGGACAGAGAACTGGGCGCTGTGTTCCCTACTACAACCAGGCTTTCAAGACCTGTGAGATTCAGACCTGGTGTCCTATTGAGGACTATGCTGCAATATGGGAGCCGGCATTGGCAGAGGCCATCAATTTCACTGTTTACATCAAGAATGCCATCCATTTCCCCAAATTTAAAGTGCTGAGAGGAAACATCAAACCAAACAAACGAAATGGGCAGAAATATCTGAATAAGTGTCATTACAATGAGAAGGAACACCCCTACTGCCCCATCTTCCGGCTGGGCTATATCGCAGAACAGGCCAGGGAGAAGTTCAGCGAGCTCTGCAGGACTGGGGGAGTGATTGGAGTGTTCATCAACTGGAAGTGTGACCTTGATCTGGACCCCTCAGAGTGTACCCCCACGTACTCCTTCCGTCGCCTGGATCTTCGGAAGAACCTGCCCAGCTCTGGCTACAACTTCAGGTTTGCCAAGTATTACAGTAAGGACGGAGAAGAGTTCCGGACACTTATCAAGGCCTTCGGGATTCGTCTGGACGTCATAGTTCATGGACACGCTGGACGATTCAGCATCATCCCAACTATCATCAACACAGTGACAGCCATGACATCTGTTGGAATATGTTCCATTATCTGTGACTGGATCATGCTCACGTTCATTGACAAGAACGATATCTACAGTGACAGAAAGTTTGATGATGACAGTAAAGTTCCCAGCCCCGGCCAGCTCCTCACAGTTCCCACAGAATTCACCATCAGCTATGGCTCCAACCACTCAGACCTGTCAGAGGGAGTGGCCCTGTGATGTCCTGCTGCTACAGTGCTATTTGGCCACATGCATGGAGGATGCTATTCCTCAGACACCTGACTGTtggacggacagacacacagacagacagacaggacggcCTTTCCCCCAATCGGTCTCAGACGTCCGCAGAAAGGCCTCTGACGGGTCCACCTCTGCGGAATTGAACTGAAAGACAGCCAAGACTTGATGGGTTAGTGTCAATTCCATGTCAATTCCTGTTGGTTCAGGAATTGAATTATACACCAATAAATAAATTCCATGTCCAGTTCAATTGACAGGGACTGAAATTATACTGTTAAACCCAATCTCAAATGATTGCAAATTGTTTGAATTGAACACAAGAAAAATAAACCAAATCATTTACAGCAATCAGCTAAACATGTTGGAGGAAATTTTTACTGAGAACCCTCTTTCCACAGTCTAACCCGAACCAAGTCAATAACTGTATACTGTAATCTATATATGCAAACATAACAATAAATGTCTAACCAAC

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0035590 purinergic nucleotide receptor signaling pathway biological_process
GO:0006812 cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004931 extracellularly ATP-gated cation channel activity molecular_function
GO:0001614 purinergic nucleotide receptor activity molecular_function

KEGG:

id description
K05216 P2RX2; P2X purinoceptor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1120548 lncRNA upstream 58969 46068004 ~ 46069268 (+) True G984406
TU1120460 lncRNA upstream 67520 45965434 ~ 46060717 (+) True chek2
TU1120493 lncRNA upstream 110459 46008675 ~ 46017778 (+) True G984361
TU1120487 lncRNA upstream 115519 46010437 ~ 46012718 (+) True si:dkey-98f17.5
TU1120469 lncRNA upstream 140405 45971448 ~ 45987832 (+) True G984342
TU1120600 lncRNA downstream 2634 46135682 ~ 46136223 (+) True G984439
TU1120647 lncRNA downstream 90659 46223707 ~ 46223979 (+) True G984482
TU1120659 lncRNA downstream 146642 46279690 ~ 46280165 (+) False LOC110535759
TU1120660 lncRNA downstream 148474 46281522 ~ 46282065 (+) True LOC110535759
TU1120698 lncRNA downstream 156176 46289224 ~ 46289425 (+) True G984526
XM_021620975.2 mRNA upstream 116502 45993188 ~ 46011735 (+) False si:dkey-98f17.5
XM_036934617.1 mRNA upstream 161614 45957602 ~ 45966623 (+) False chek2
XM_036934618.1 mRNA upstream 161614 45957683 ~ 45966623 (+) False chek2
XM_036934619.1 mRNA upstream 161614 45957848 ~ 45966623 (+) False chek2
XM_036934620.1 mRNA upstream 161614 45958393 ~ 45966623 (+) False chek2
XM_036935533.1 mRNA downstream 29971 46163019 ~ 46203981 (+) False LOC110535755
XM_036935535.1 mRNA downstream 29971 46163019 ~ 46203981 (+) False LOC110535755
XM_036935537.1 mRNA downstream 29971 46163019 ~ 46203981 (+) False LOC110535755
XM_036935538.1 mRNA downstream 29971 46163019 ~ 46203981 (+) False LOC110535755
XM_036935539.1 mRNA downstream 29971 46163019 ~ 46203981 (+) False LOC110535755
TU1120571 other upstream 18297 46107920 ~ 46109940 (+) True G984422
TU1119620 other upstream 715155 45383407 ~ 45413082 (+) True LOC110535735
TU1118214 other upstream 1842268 44280925 ~ 44285969 (+) True G982236
TU1117647 other upstream 2412940 43660374 ~ 43715297 (+) True G981690
TU1115850 other upstream 3491528 42631824 ~ 42636709 (+) False G980019
TU1121569 other downstream 474344 46607392 ~ 46607681 (+) True G985257
TU1121722 other downstream 714655 46847703 ~ 46875441 (+) True G985387
TU1121736 other downstream 789891 46922939 ~ 46923827 (+) True G985401
TU1121954 other downstream 1118264 47251312 ~ 47252236 (+) True G985597
TU1122958 other downstream 1645974 47779022 ~ 47779304 (+) True G986461

Expression Profile