RNA id: XM_036935533.1


Basic Information

Item Value
RNA id XM_036935533.1
length 8903
RNA type mRNA
GC content 0.56
exon number 54
gene id LOC110535755
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 46163019 ~ 46203981 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCACTAGAAATAAATCTACTCTTGTCGAATACATGAATCATGCCAACGTGAGCATGCGATGTAGCtagatataataataataagacagTAAGATGTGTACTCTTTGACACCGTTTACTCAAAACGAAAAACGTTTTGTAACAAAAACGAGAGGTTCAATTGGACATATTCAGGTAGGTCCCGCCCTGTTTCGTTCGGTCGTTCCAGTTTCTCTGTTGCTTCCGTTTGGTTCCGAAACGGTAAACGGTTAATCTGTTGCACGCGTGTGGCTAGTCGACATCACAATTGTTAGCATCAACACGCCCAATAAAGCTGCAATGGACGGTAGAGTTTCAAGAGGATGTCTGTGAATGCTCCCACTTCTACTCTCGGGATTTCTGCTCGTATTGTGGCTACTCTGGAGGATTAAGGACAAGATGATGCTGGACCAAGGTGTGGAAACTCCGACTGGGTGTGGAAGCTCTGCAGCTGCAGCACAAGAGGAGATGCAAGCGGCCGATGGTCCCACCGCAGCTGTACACACCCCTGCTCCTGTTGAACACTCCACACCAATGGTTCTTGCATCATCTACCTCAGACAGTGGGGCCAACAGTCCCCAAACCCACATTGACCCCTCTGAGGGACCCATGATACCCAGGGCAGGGGGTTCCCAGCCTCCTCAGGCCTCTTCAGAGGGGATGACAGAGCAGTACACACAGACCCAACCATCTCCCTTCGTCGTTCCTCAACCTCCCAGTAGAACGACCAGACCCAAGCTTAGCTCAGGCCCCGAGGTTCGACGAGCCTGTCTCAAGTTCATCCTGGGGGCATCGGAGGACAATTCATCAGATGACGAGCCGCCTTTGACCATGAAACCCCCTACAGGTTCGAGTTCCTCCGAGGCCACCGCCTCCACCGTACGGCAAACTGCATCAGCAACCTCAACCGCCTTCTCCCCCCCACAGCAAGTTCAATCAGTAACGTTAACCACCACCTCCCCTGGCATGAGGCCTAGCATGTCTCACCCACACCTGGTGAAGAAGGTTCGCGAGATCCGGAAAATGGAGCTGCAGAGAGACTTCACAGTGGCCTCGCCAGCCGAGTTTGTCACCCGCTTCGGTGGCAACCGGGTCATAAATAAGGTGCTGATAGCTAATAATGGCATAGCAGCGGTCAAATGTATGCGTTCCATCCGCCGTTGGTCCTACGAGATGTTCCGTAACGAGAGGACCATCCGTTTTGTGGTGATGGTCACCCCTGAGGACCTGAAAGCCAACGCAGAGTATATCAAAATGGCGGACCACTATGTACCAGTCCCAGGCGGagccaacaacaacaactatgCCAATGTAGAGCTGATCGTAGACATCGCCAAGAGGATTCCTGTACAGGGGGTCTGGGCCGGTTGGGGTCACGCCTCTGAGAACCCCAAACTACCTGAGCTCTTGGACAAGAACGGAATCTCTTTCTTAGGGCCGCCCAGTAAGGCCATGTGGGCTCTGGGAGATAAGGTGGCCTCCTCCATCGTGGCCCAGAGCGCAGACATCCCCACCCTGCCCTGGAGTGGATCAGGTCTGAGAGTAGACTGGACAGAGGACGACCAGAGGCTGGGCCACGTGATTAGCGTGCCTCCGGAGGTCTACGTGCACGGCTGCGTGCGCGACGCTGACGATGGACTGGCGGGAGCAGACAGAATTGGCTACCCGGTGGTGATAAAAGCGTcagaaggaggagggggcaaGGGCATCCGGAAGGTGGACAACGCTGAGGACTTTGCCAGCTTCTTTAGACAGGTGCAGGCGGAGGTGCCCGGCTCGCCCATCTTCGTCATGCAGCTGGCCCAGCATGCCCGTCACCTGGAGGTCCAGATCCTCGCCGACCAGTACGGCAACGCCATCTCCCTGTTTGGCCGAGACTGCTCCATCCAGCGGAGACACCAGAAGATCATTGAGGAGGCCCCGGCCACCATAGCATCTGCCACCACCTTCGAGCACATGGAGCAGTATGCAGTGCGGCTGGCTAAGATGGTGGGCTACGTGAGTGCAGGCACTGTGGAGTACCTCTTCTCTGAGGACGGGAGCTTCCACTTCCTGGAGCTCAACCCCCGTCTGCAGGTGGAACACCCATGCACAGAGATGATCGGAGACGTCAACCTGCCCGCCGCCCAGCTCCAGATAGCCATGGGGATCCCCCTCCACAGGATTAAAGATATCCGCGTGCTGTATGGAGAGACGCCTTGGGGGGACACCACCATCAATTTTGAGGCCCCCGACTGTGTCCCCAGTCCCCGGGGACACGTCATCGCGGCCCGCATCACCAGCGAGAACCCAGACGAGGGCTTCAAGCCCAGCTCGGGCACGGTGCAGGAGCTCAATTTCCGCAGCAGTAAAAACGTGTGGGGCTACTTCAGCGTGGGGGCTGCTGGGGGTCTGCATGAGTTTGCTGACTCCCAGTTCGGCCACTGTTTCTCCTGGGGGGAGAACCGAGAGGAGGCCATTTCgaacatggtggtggccaTGAAGGAGCTGTGTATCCGGGGGGACTTCAGGACCACGGTGGAGTACCTCATCAAGCTGCTGGAGACTGAGAGCTTCAGGAACAACGACATCGACACCGGCTGGCTGGATAATCTCATCGCTGATAAAGTTCAGGCAGAGAGGCCAGACACCACGCTGGGCGTTGTCTGTGGGGCGTTACACGTGGCGGACGCCAGCTTCAGGAAGAGCATGTCTGACTTCCTGCACTCACTGGAAAGAGGCCAGGTGCTGCCCGCAGCCAGTCTGCTGAATACTGTTGATGTGGACCTGATCTACGAGGGGGTCAAATACTGCCTCAAGGTAGCTCGCCAGTCCCCCACTACGTACGTCATCATCATGAACGGCTCGGACATCGAGATCGACGTCCACCGGCTGAGCGACGGCGGGCTCCTGCTCTCCTACAACGGCAGCAGCTACACCACCTACATGAAGGAGGAAGTGGACAGCTACCGCATCACTGTTGGCAACAAGACGTGTGTGTTTGAGAAGGAGAGGGACCCCACGGTGCTGAGGTCATCCTCTGCTGGTAAACTCCTGCAGTACCTGGTGGAGGATGGAGGCCATATCTGCGCCGGGAACTCATATGCGGAGATCGAGGTGATGAAGATGGTGATGACGCTGACGGTGGTGGAGTCGGGCTGTGTCCACTATGTGAAGAGGCACGGGGCGGTGCTggagcctggctgtgtggtgGCAAGATTGGACCTGGATGATCCCAGCAACATCCAACCAGTGGAGCTGAACACGGCCTCCTTCCCGGCCCAGCAGCCGCTGCCCATCGTGGGGGAGAAGCTCCACCAGGTCTTCCACATGGTCCTGGAGAACCTGGTCAAGGTCATGGCCGGCTACTGCCTCACCGAGCCCTACTTCAGCAACAAGGTAAAGCAGTGGGTGGACACCCTGATGAAGACCCTGCGGGACCCCTCGCTGCCCCTGCTGGAGCTCCAGGAGTTAATGACCAGCGTAGCCAGCCGCATCCCGCCCAGCGTCGAGAAGGCCATCCGCAAGGTCATGGCTCAGTACGCCAGCAACATCACCTCGGTGCTCTGCCAGTTCCCGAGCCAGAGGATTGCCTGTATCTTGGACAGCCACGCAGCCACCCTTCAGAAGAAGGCCGACCGGGAAGTGTTCTTCATGAACACTCAGAGTATCGTCCAGCTGGTGCAGAGGTACCGCAGTGGAATCCGAGGATACATGAAGTCTGTGGTGCTGGATCTGCTCAAGTGTTACCTTCAGGTGGAGATGCAGTTCCAGCAAGCTCACTACGACAAGTGTGTGATCAACCTGAGGGAGCAGTACAAGCCTGACATGACCCCTGTGCTGGAGAGCATCTTCTCTCACGCTCAGGTCTCCAAGAAGAACGTCCTGGTCACCATACTCATCGATCAGCTGTGTGGGCGGGACCCCACCCTAGCAGACGAGCTGATGGTCATCCTGAACGAGCTCACACAGCTCAACAAGATGGAGAACTCAAAGGTGGCACTGCGTGCCAGACAGGTTTTGATCGCTTCCCATCTGCCCTCTTATGAACTGAGGCACAACCAGGTGGAGTCCATCTTTCTGTCTGCCATCGACATGTATGGACACCAGTTCTGCCCAGAGAACCTGAAGAAACTCATCCTGTCTGAGACCTCCATCTTTGACGTCTTGCCCAATTTCTTCTACCACTCTAACCGGGTGGTGTGCATGGCTGCCTTGGAGGTGTACGTGCGAAGGGGCTACATTGCTTACGAGCTGAACAGCCTCCAGCATCACCAGTTGCAGGACGGGACGTGTGCCGTAGACTTCCAGTTCATGTTGCCGTCGTCCCACCCCAACAGAGGGAGCAGCCCTACTCTGAACAGGTTGACGATGCCGGTGAACAGTGTGGGACAGTTTGAgatgaggcggcagggtagcgaACTCTTCCTAGATGGGGCGTTCTCTCCCCCATGTCAGCGCATGGGAGCCATGGTGGCCTTCCAGTGTTTCGAAGACTTCAAAAGGAACTTTGACGAGGTTATCTCCAGTTTTGCTGACCCGCTCCTGGAGAGCCCGCTTTTCCCCGAGGCCTGCCCCAGCCTCTACGAGGAGGATAACTGCAAGAACATGAAGGAGAACCCCATCCACATCATCAATGTGTCCATCAAGTCGGCGGACACAGAGGATGACGATACCTTGGTCACAGCCTTCGCTGCCTTCGCCCAGTCTAAGAAGGTTTTACTCTTTGAGCACGGCATCCGAAGGATCACGTTTTTAGTCGCACAGAGGAGGGAATTTCCCAAGTTCTTCACTTTCAGAGCCAGAGACGGGttTCAGGAGGACCGTATCTACAGGAACCTGGAGCCTGCTCTGGCCTTCCAGCTGGAGCTGAACCGCATGCGTAACTTTGACCTGACGGCCGTGCCCTGTGCCAACAGCAAGATGCACCAGTACCTGGGTGCGGCTCGCGTGCAGGAGGGCGCTGAGGTCACAGACTACCGCTACTTCATCCGAGCCATCATGCGCCACTCTGACCTCATCACAAAGgAAGCGTCATTTGAGTACCTACAGAACGAGGGCGAGCGTCTTCTCCTGGAGGCCATGGATGAGCTGGAAGTGGCCTTCAGCAACACCAAATGGCGCACCGACTGCAACCACATCTTCCTCAACTTTGTTCCGACCGTCATCATGGACCCCTCCAAGATTGAGGAGTCGGTGCGCTCCATGGTGATGCGTTACGGCAGTAGGCTGTGGAAGCTCCGGGTGCTCCAGGCCGAGCTCAAGATCAACATCCGGCTGACGCCCACTGGGACCGCCATCCCCATCCGTCTGTTCCTCACCAACGAGTCCGGCTACTACTTGGACATCAGCTTGTATAAGGAGGTCACAGACCCCTCAACGGGACAGATCATGTTCCAGTCGTACGGGGACAAGCAAGGCCCTCTGCACGGCATGCTCATCAACCATCCCTATGTCACCAAGGACCTGCTGCAGTCCAAACGCTTCCAGGCCCAGACTTTGGGCACCACCTACGTCTACGACTTCCCAGAGATGTTCCGACAGGCCCTCTTTAAGCTTTGGGGTCCGGGGGACAGCTACCCTAAAGACGTGCTGATGTGCACCGAGCTGGTGCTGGACCCGCATGACCGACTGGTGCAGATGAACCGCCTGCCTGGAGACAACGAGgtGGGAATGGTAGCCTTCCGGATGCGGATGAAGACTCCAGAGTATCCCGAGGGCCgcgacatcatcatcatctgcaaCGACATCACCTACATGATTGGGTCGTTCGGGCCCCAGGAGGACCAGCTGTTCCTGCGGGCGTCGGAGATGGCCCGGGCCGAGGGCATTCCACGCATCTACATCTCAGCCAACAGCGGGGCGCGCATCGGCCTGGCCGAGGAGATACGACACATGTTCCAGGTTGCCTGGACCGACCCCCAGGACCCTTACAAGGGTTTCAAGTACCTGTACCTGACGCCCCAGGACTACACCCGCATCAGCTCCACCAACGCTGTCCACTGCCACCACGTGGAGGAGGGCGGAGAGTCCAGGTACATCATCACTGACATCATAGGGACCGAAGATGGTCTTGGGGTGGAGAACCTGAGAGGATCAGGCACCATCGCCGGGGAGTCTTCCCAGGCCTATGACGAGATCATCACCATCAGCATGGTGACGTGCCGTGCCATTGGGATCGGGGCTTATCTAGTGCGTCTGGGGCAGAGGGTCATCCAGGTGGAGAACTCCCACATCATCCTGACCGGGGCTGGAGCCCTCAACAAGGTTCTGGGTCGAGAAGTGTACACCTCCAACAACCAGCTGGGAGGCGTCCAGATCATGCACAACAACGGAGTGACGCACACTACGGTGCCCGATGACTTTGAGGGCGTTTTCACTATCCTGCGGTGGCTCTCCTATATGCCGAAGACCAAGCACTCTCCGGTGCCGGTGATACCACCCAAGGACCCAGTGGAGAGGGAGATCGAGTTCACCCCCACGAAGGCTCCCTATGACCCCCGCTGGCTACTGGCCGGGAGGCCCCACCCCACTGTAAAAGGAGCCTGGCAGAGTGGATTTTGTGACCATGGCTCGTTCATGGAAGTGATGGGGTCTTGGGCCCAGACAGTAGTGGTGGGCAGAGCCAGGTTAGGAGGGATTCCCCTTGGCGTCATCGCTGTGGAAACACGCACCGTTGAGGTGGCTATCCCTGCCGATCCAGCAAACTTGGATTCTGAGGCCAGActgGTACAGCAGGCCGGCCAGGTGTGGTTTCCGGACTCTGCCTTCAAGACGGCCCAGGCCATCCGTGACTTCAACCGTGAGCGGCTGCCTCTGATGGTGTTCGCCAACTGGAGAGGCTTCTCCGGGGGAATGAAGGACATGTACGACCAGGTGCTGAAGTATGGGGCCTATATCGTGGACGGCCTGCGTGAGTTCCGCCAGCCTGTGTTGATCTACATCCCGCCGCACGCTGAGCTGAGGGGGGGATCCTGGGTGGTGATCGATCCCACCATCAACCTTCTGTGCATGGAGCTCTacgcagacagagagagcagGGGTGGTGTGCTAGAGGCAGAGGGCACTGTGGAGATCAAGTATCGCAGGAAGGACCTGTTGAAAACCATGCGCCGGATCGACTCGGTCTACGCCGGTCTGGCTGAACAGCTTGGTAAACAGCCTGGTACACCGGAGCTGACAGACAAACAGCGGAAGGACCTGGAAGCCAAGCTGAGGGCCAGAGAGGAGTTCCTGCTGCCCATCTACCACCAAGTGGCAGTGCAGTTTGTGGACCTCCACGACACCCCTGGTAGAATGCACGAGAAGGGTGCCATCACGGACATCCTGGACTGGAAGAATGTGCGGAGCTTCTTCTACTGGCGTCTGCGGCGCCTCCTGCTGGAGGGCGTGGTGAAGTGTGAGGTCCTGCAGGCCAACCCAGAGCTGAGTGACGGACACATCCAGTCCATGCTGCGCCGCTGGTTTGTGGAGACAGAGGGCACGGTCCAGGCGTACCTTTGGGACAATAACAAAGCGGTGGTGGAGTGGCTGGAGAAGCATTTGGCCAAAGAGGACGGCACACGATCCGCCATCAGAGAGAACATCAAGTACCTGAAGAGGGACCACGCCTTGAAACACAtccgcagCATTGTGCAGGCCAACCCTGAGGTGACCATGGACTGCATCATCCACATGAGCCAGTCCATCACTCCATCCCAGAGGGCCAAGATCTCCCACCTGCTGGCCACGATGGACGGCACCGCGCCCAGTTAAACTCCAGATCTGAGGCTGAGCTGCCCAATGCCTTACACAGGAAATCCCTGAAGTTCTAGCATAGGGGAGAGAATAGATAAGTAGGTCTGTGGAATGTGGACCCAGGGCAGGGGGACACATGCACTATCTCCCCATCGGTGCCTCCTACTTTCTATTGTTGAGTTGAGACAATAAAGCTAAGGCGCCAAAGAAGCCAAAACGTGTCTAATTCTCAGGGTTAGGGGCTAGTTCGGGCTGCTCATACGCTATAACCATGCAGCACTATACACTACACATGCACTAGATCAAGGGTCCCTGCTTTGGGTAGATTTATTTTTCTTTCcgcggatggtcggggggccggaacatagttataaatcatttgtacactgcaaattgaccacaagaatccAAAACATATatagtatttgacaaaaacagtataattttaaacctTGATTTCATTGGAATACGATCACTTATGCCTCTCtatttatgcgtgggaatacttgggaacagattcccTAAATTAAAATCCCTTTTAGCTGATTTCCTAGCGATTTTAGTCTTCTATGTtcaacaaatgaaatatatttttttaaatcttcagCTTGGGGTGCCAAATAAAATCGCCCGGGGGTTtcggtaagtattcagaacccttgactttttccacattttgttacgttacagccttattctaaaatggattcattcgttttttccccctcaccaatctgcacacactaccccataatgacaaagcaaaaacagatttgggGATTTTTTTCTAAATTATACAAAAATcaacactacaagcttggcacaccagtattttgggatttctcccattcttctctgcagatcctctcaagctctgtcaggttggatggggagcgtcgctgcacagctattttcaggtctctccagagatgtttaatcgggttcaagtctgggctctggctgggccactcaaggacatccagagacttgtcccgaagccactcctgcgttgtctttgctATATGCTTAGGGTCTTTGCCCTGttggaaccttcaccccagtctgagaacctgctccagagtgctcaggacttcatcaaggatctctctgtactttgcttcgttcatctttccctcgatcctgactagtctcccagtccctaccactgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1120600 lncRNA upstream 26796 46135682 ~ 46136223 (+) True G984439
TU1120548 lncRNA upstream 93751 46068004 ~ 46069268 (+) True G984406
TU1120460 lncRNA upstream 102302 45965434 ~ 46060717 (+) True chek2
TU1120647 lncRNA downstream 19726 46223707 ~ 46223979 (+) True G984482
TU1120659 lncRNA downstream 75709 46279690 ~ 46280165 (+) False LOC110535759
TU1120660 lncRNA downstream 77541 46281522 ~ 46282065 (+) True LOC110535759
TU1120698 lncRNA downstream 85243 46289224 ~ 46289425 (+) True G984526
TU1120720 lncRNA downstream 124078 46328059 ~ 46328343 (+) True G984545
XM_021620984.2 mRNA upstream 29971 46128237 ~ 46133048 (+) True p2rx2
XM_021620975.2 mRNA upstream 151284 45993188 ~ 46011735 (+) False si:dkey-98f17.5
XM_036934618.1 mRNA upstream 196396 45957683 ~ 45966623 (+) False chek2
XM_036935551.1 mRNA downstream 31088 46235069 ~ 46282246 (+) False LOC110535759
XR_005034639.1 mRNA downstream 34488 46238469 ~ 46277555 (+) False LOC110535759
XR_005034640.1 mRNA downstream 34488 46238469 ~ 46277555 (+) False LOC110535759
XM_021620998.2 mRNA downstream 34495 46238476 ~ 46282246 (+) False LOC110535759
XM_036935552.1 mRNA downstream 34495 46238476 ~ 46282246 (+) False LOC110535759
TU1120571 other upstream 53079 46107920 ~ 46109940 (+) True G984422
TU1119620 other upstream 749937 45383407 ~ 45413082 (+) True LOC110535735
TU1118214 other upstream 1877050 44280925 ~ 44285969 (+) True G982236
TU1117647 other upstream 2447722 43660374 ~ 43715297 (+) True G981690
TU1115850 other upstream 3526310 42631824 ~ 42636709 (+) False G980019
TU1121569 other downstream 403411 46607392 ~ 46607681 (+) True G985257
TU1121722 other downstream 643722 46847703 ~ 46875441 (+) True G985387
TU1121736 other downstream 718958 46922939 ~ 46923827 (+) True G985401
TU1121954 other downstream 1047331 47251312 ~ 47252236 (+) True G985597
TU1122958 other downstream 1575041 47779022 ~ 47779304 (+) True G986461

Expression Profile