RNA id: TU1120659


Basic Information

Item Value
RNA id TU1120659
length 454
lncRNA type sense_over
GC content 0.41
exon number 2
gene id LOC110535759
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 46235069 ~ 46282246 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCCAGCCAcctagcaatttgagttctagccaatgagcttgCATTTGAGTGACAGTGTTATCCAACAAAGTTGCAGGGCGGGCCCAACGGCTCAgtggacacagcagagagagagagaaatgacgtcgtgcacatacagtatgtgacataTTATGCCATTttcagggaccacttttggctcatgAGCACTACTTTCATAACTACTGACTAataagtatacaaaagtaccggagaatctctttaagGGACCCAAGAAAAGCACAAACCTGTGTCATGTCTATGATCTACCACACACTTGTATATTTCAATTCATTTCTGTTTGTGAATTCAAGGCTAAGGGAGCCTTTATGTCTCTGCTGGTTTAGTATTTCAGATGTTGAATTCAGAGCAAAGTGTACTTACTCTCTAAAATAGTacattatatatttttgtacTATAGCAACCGTCAGGCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1120647 lncRNA upstream 55711 46223707 ~ 46223979 (+) True G984482
TU1120600 lncRNA upstream 143467 46135682 ~ 46136223 (+) True G984439
TU1120548 lncRNA upstream 210422 46068004 ~ 46069268 (+) True G984406
TU1120493 lncRNA upstream 261912 46008675 ~ 46017778 (+) True G984361
TU1120487 lncRNA upstream 266972 46010437 ~ 46012718 (+) True si:dkey-98f17.5
TU1120660 lncRNA downstream 1357 46281522 ~ 46282065 (+) True LOC110535759
TU1120698 lncRNA downstream 9059 46289224 ~ 46289425 (+) True G984526
TU1120720 lncRNA downstream 47894 46328059 ~ 46328343 (+) True G984545
TU1120722 lncRNA downstream 49122 46329287 ~ 46329896 (+) False G984547
TU1120723 lncRNA downstream 49122 46329287 ~ 46329825 (+) False G984547
XR_005034639.1 mRNA upstream 2135 46238469 ~ 46277555 (+) False LOC110535759
XR_005034640.1 mRNA upstream 2135 46238469 ~ 46277555 (+) False LOC110535759
XM_036935542.1 mRNA upstream 75709 46167954 ~ 46203981 (+) False LOC110535755
XM_036935556.1 mRNA downstream 21332 46301497 ~ 46326649 (+) False LOC110535760
XM_036935555.1 mRNA downstream 21348 46301513 ~ 46326649 (+) False LOC110535760
XM_036935557.1 mRNA downstream 21490 46301655 ~ 46319356 (+) False LOC110535760
XM_036935554.1 mRNA downstream 21490 46301655 ~ 46326649 (+) False LOC110535760
XR_002475305.2 mRNA downstream 21490 46301655 ~ 46326649 (+) True LOC110535760
TU1120571 other upstream 169750 46107920 ~ 46109940 (+) True G984422
TU1119620 other upstream 866608 45383407 ~ 45413082 (+) True LOC110535735
TU1118214 other upstream 1993721 44280925 ~ 44285969 (+) True G982236
TU1117647 other upstream 2564393 43660374 ~ 43715297 (+) True G981690
TU1115850 other upstream 3642981 42631824 ~ 42636709 (+) False G980019
TU1121569 other downstream 327227 46607392 ~ 46607681 (+) True G985257
TU1121722 other downstream 567538 46847703 ~ 46875441 (+) True G985387
TU1121736 other downstream 642774 46922939 ~ 46923827 (+) True G985401
TU1121954 other downstream 971147 47251312 ~ 47252236 (+) True G985597
TU1122958 other downstream 1498857 47779022 ~ 47779304 (+) True G986461

Expression Profile