RNA id: XM_021621242.2


Basic Information

Item Value
RNA id XM_021621242.2
length 3465
RNA type mRNA
GC content 0.43
exon number 12
gene id fam102aa
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 51281663 ~ 51304505 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCGTTTTGGAACCGGGCAGCCAGATTCACAGTTCAAAGCCCACGGCTAAATCTTCTCAAAACAAAAGTTATGTAGCCTAGGCACCTGTAGAAATGAGTAGGATTGTGTGTTTTCACTTGCAAAAGTGATTGATTTTGATAAAAACTTATTGCCAATGAAAACTTGTTAgaaaattcaaaaatatattttctggAAAATAAATGTAGGTTTCTGTATGATGCACCATATTGCCTTCTTGACAACATTGGCGCAGATTACTGTTTGTTTTGCGAAAGGCGCTCCTCCCTCACCGTTTTTCCCGTCACGTCACCGGCCATAGACCGGTACACCGTGGCTCAGGTATTCGAACTCCATCAACGGTATTGTTTCGGGGTAATAATACTGTCCATTAGGGTTGTCTTTCTTTAAGTGTGTGGGTCACCAATGGCATGTGAATTGTCTCTTTCTTATCTTTAGCTGGCGATATAAGAAAAAGAGATACATGTCAGGAGTTGTATTTCATATAGCATCAGAGGCTGGTTTTAACAGAAAAGTTTCAGACAAATGTGTTGCTTGTTCTACTATGGTTTGTTCTCCAAGCTGGCTGGTCGTTAGCCCAACAGCATTTGAGCCCGCATTGCATCAAGCGCACAAGAAAAAGTTGTGAGGTGACAATCTAAACTGTGGTTCGGTCTCAAGGTTCATTAAAATATCCATCAATGGCTTTTTTTGTGAAAAAGAAGAAATTCAAGTTTCAGACACATTTGACATTGGAGGAGCTGACCGCTGTGCCTTTTGTCAACGGAGTATTGTTCTGCAAGCTTCGATTGTTGGACGGTGGAGACTTTGTTGCAACTTCATCAAGAGTGGAGGTTCAGGAGAACTGTGTTCGATGGAAGAAGAGGTTTACCTTTTTGTGTAAAATGAGTGCCAACCCCACAACTGGAGTGCTGGATCCCTCGATCTGTCGGGTTTCTGTGCGGAAGGAACTCAAAGGAGGAAAAACGTATTCAAAGCTGGGTTTTACTGACCTAAACATGGCAGAGTTCGCTGGCTCAGGCTCTGCAGTCCGCTGTTGTCTACTGGAGGGATACGACACCAAGAATACCAGACAGGACAACTCCATACTGAAGGTGACTATCGGGATGACCCTCCTCTCTGGAGATCCGTGCTTTAAAACCGCCCCCAGCACAGCCAAGTCCATCTCGATCTCAGGCCAGGACCATACCCTGCAGCTAGACTGCAAGGGTGAGGGCACTGGAACCCCTAACCGTCCCCCTTCTTTGGGCCGGTCCATGAAGCCCAGGCCCTCTGTCATCAGCTCAGGACTTCCAGAGGAGCCAGACCAGACCCAGATGGCCAGCCCAGGAGAAGTGTTCCAGTCGGGCCACTCTCGCAACTCCAGCTACGCTAGCCAGCTGAGCAAGATCTCAGGCTACAGCACAGAGCACTCCTGCTCCTCCAGTATGTCTGATCTCACACACCGGAGGAACACCTCCACAGGAAGCAGCACCTCTGGGGGCCTGAGTGTGACCGTAGACACCCCCCCAGAGAGGGAAAGCGACATCTGCCGGCCAGAGAGACCCCCTCGCCCCCCACGGCCCATCCTGCCATCCAACAGACCCCCCAGGAGGAAGCAGGATTCTGTGGAGAGCCATCCCTCCTGGGTGAATGACACCCGCATCGATGCTGACGATATAGTTGAAAAGATCGTCCAGAGCCAGAACTTTGGTGACATAAGTAACACTGAAGACAGTAACCTGCGATTGTTTGTCAGTAGAGACGGGACCACTTCCCTGAATGAGCTACAGCTTGGAAacagGGTGTCCGCCGGTGTCTATGAGCCAGTTGTGATTGAGAGCCATTAGGACTGGTGAAGATGTGAGTTTAAGTTGAGGCCTCTGTGGTCAAGCTTGTGGACTAACTCTAGAAACATATGGTAGTCATCTTGGAGCACCAGCTGAGCTGGTTGCCATGAGAGGAGGACTGTACCGCACAGTTTTCATGTTTAGTTGTGGATCTGTTTACCCTATGGGGTCTGATTGATTGTAAACTGTTTTTGTCtggtcattttgcactttatttctAATGTGTTGTATCCCCAGAAGATGTGGCTTAAGTCTGAACTCATTTCAGCTGTATGTTGTTACAGTATCTTTGTTTCCATGGTAAATTTCTTGTCCTGTTGATCAGGAAGTGACATCATGCATTTCTCTATCCTCAGCCTTTCCACAAATATTGAAAAATAACGATCGGACAAATGTAATACTGTAAAGATAATATCCAATACAAATTGTATGCGCTACTTTAGAATGTATTTTTCTCATACATGACCCAAAGCACCAGATCATCTCTGTGATGACAGTGCTAGTCACTATTGGAGGAGAGCTGGTGATGGAGAAGAGGGAAAGTTCTCAGCACTGGTCTgactggtttcaatcccatttaGATTGTAGTACTCTGGCGCCCCCTTGTGAAGAAATGGCCTGTTGAGGGATCAGTCTCTGATCTTCAATCATGTCCCCAAACTGGTAGGTCCTAGCCTGTCATTTTTAGTGTTTACAAATCTCAAGGAACTGGGTAGGTGTAGTAATATGGGGGAAGTTTTATATGCTATAAGTTCTAAACCCATTAGATGGCTATTTGGTGCTGTCTGATTCTCTCCGATCTGCAAACACCAAAGGGTTAAGAAGCTAGGGGTCAGACTTGACAATACCTATTCAGCAGTCGTTTACACTGGCAGATGTCTTCAAACATCTTATGAAGGATCATTCATCATTTATTTGTTTTTCCAATCAGCTTGCTGGtttgttagattttttttaaatggaattgatCAAGCACTACAGAGGTTCCctgtttattgttttttataGAATCACATTCTCAATGATGTTGAAAAATACAGAACAAATGGTTTTCCTACATATCTGAATGTAAACTGGGATATACTTTTTTCTATCATATGTGACTAATAGAGCTGTTGTTATGGACTGAATTCTCGGAGGTTTGATACACTTGTTCAGAGTTAACATTTTGCAATGTGCTGATAAATAGTATCTGTCAGTTGTCTGCCTATGAATGTCTTAAATGAGATTCTGTATTTATTGCTGtgcattatgtacaaaatatcaGTTCTCACATGGGCTAATATTGACCACAGCTGGGTTTACATTGAATGGTCTCAGGTGATGTGTGACGTTCATTGCGACAGCACTTTAGATTGaatttgttttctttctttttttttcttctttcctgTGTTTGAAGAGGGGTTTAAGCTATACACACGACCCCAGTGTCCTTACACATAAATTAGCATTTTGTCTAATCTTGTTACATTTTCTATTAATCTTAGATTGTAATTTTAACAAATGCACATGTATACTAGATTTTTAAATTAACAGTAATCTCAGTCTATTTTTGTGATCCTGCCTAAACGTTTCATGAACAATAAAAattaatttgatttttttttttctcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1128011 lncRNA downstream 2659 51275666 ~ 51279004 (-) True G991028
TU1128026 lncRNA downstream 6707 51274311 ~ 51274956 (-) True G991043
TU1128025 lncRNA downstream 8005 51273413 ~ 51273658 (-) True G991042
TU1128024 lncRNA downstream 8740 51272658 ~ 51272923 (-) True G991041
TU1128022 lncRNA downstream 11091 51270339 ~ 51270572 (-) True G991039
TU1128043 lncRNA upstream 1012 51305517 ~ 51305983 (-) True G991060
TU1128048 lncRNA upstream 7041 51311546 ~ 51311833 (-) True G991065
TU1128052 lncRNA upstream 12257 51316762 ~ 51320232 (-) True G991069
TU1128003 lncRNA upstream 44003 51348508 ~ 51352137 (-) False G991025
TU1128004 lncRNA upstream 46388 51350893 ~ 51352137 (-) True G991025
XM_036935707.1 mRNA downstream 35741 51224185 ~ 51245922 (-) True LOC110535883
XM_036935706.1 mRNA downstream 53394 51224185 ~ 51228269 (-) False LOC110535883
XM_021621230.2 mRNA downstream 53438 51224185 ~ 51228225 (-) False LOC110535883
XM_021621229.2 mRNA downstream 53440 51224185 ~ 51228223 (-) False LOC110535883
XM_021621233.2 mRNA downstream 57541 51206885 ~ 51224122 (-) False sh3glb2a
LOC118937364 mRNA upstream 60251 51364756 ~ 51370212 (-) False LOC118937364
XM_036935714.1 mRNA upstream 106164 51410669 ~ 51422136 (-) False mmp11a
XM_021621250.2 mRNA upstream 106164 51410669 ~ 51423793 (-) True mmp11a
XR_002475334.2 mRNA upstream 124975 51429480 ~ 51432055 (-) False LOC110535893
NM_001165197.2 mRNA upstream 155933 51460438 ~ 51471151 (-) True upb1
TU1127270 other downstream 237355 51040780 ~ 51044308 (-) True G990411
TU1126696 other downstream 657558 50623430 ~ 50624105 (-) True G989880
TU1126123 other downstream 1149490 50131329 ~ 50132173 (-) True G989343
TU1126121 other downstream 1159847 50120576 ~ 50121816 (-) False G989341
TU1125904 other downstream 1375411 49904729 ~ 49906252 (-) True LOC110535846
TU1128070 other upstream 59745 51364250 ~ 51366417 (-) False LOC118937364
TU1128142 other upstream 211041 51515546 ~ 51523237 (-) True specc1la
TU1128391 other upstream 537561 51842066 ~ 51842522 (-) True G991349
TU1132417 other upstream 3818005 55122510 ~ 55124354 (-) True ct030
TU1134493 other upstream 5385846 56690351 ~ 56786868 (-) False adgra2

Expression Profile