RNA id: TCONS_00038865


Basic Information

Item Value
RNA id TCONS_00038865
length 2302
RNA type mRNA
GC content 0.47
exon number 16
gene id XLOC_019744
representative False

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 33724979 ~ 33995710 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTTTGCCTTTGGACCGCCTCTCCCGTCCCTCCTTCTAGCTTCTGTGGCTGCTATAAGCTCGTGTTTATTTTCCTCTCACTTAAGGAAAGGATTGATTCCTTTGGGACGGGAAATAAATCACTTCAGTTTGACCAAGGGTGAAGGATTTGGGGATCCTctagatttactcactttatctgtttattttatctgtttttttgttcTGGCAGGAAAAAAACGACGATAAAAGTTGTAGGACATGATACTAGCCTATTTGATAAGAGATCTGCTTGATCGTTGTTTGAAAGAAACGTCGGCGCAGATTATAAATCATTTCGTATTGTTTCCACTGTGCGTCTTGGTGACACCGGGATCTGTCTAGCTTTgccagactctctctctctctctctctctctctctctctctcgctctctctctctctctctctctcgctaacgcacacatacacgcacacgcgCAGGCGCGCGCAATAAGGGTACCTGAGAACACCATTAACGGGAAGAGAAACTGAGAAATCTAGGTTTCATGTTTGGGATTCAGGAGAGCATCCAAAGGTGTGGGAGTATTTTGAAAGAAGAACCCATCGGAGCCGGCATGAACACTGTCCGAACATGGATTCAAGGCGCCGGGGTGCTGGATGCGAACACGGCCGCGCAGAGTGGAGTGGGACTGGCCCGTGCGCACTTCGAGAAACAGCCGCCCTCAAATCTTCGGAAATCCAACTTCTTTCACTTTGTTTTAGCTCTTTATGATCGACAAGGTCAGCCGGTGGAAATAGAGAGAACCTCCTTTGTCGGATTTGTTGAAAAAGAGAAGGAGACTACAGGAGAAAAGACAAATAATGGGATACATTACAGACTGCAACTTCTCTACAGCAACGGCATCAGAACAGAACAGGATTTTTATGTAAGACTAATTGACTCCATGACTAAACAGCCCATCATCTACGAAGGTCAAGACAAGAACCCAGAGATGTGCCGTGTACTCCTGACTCATGAAATCATGTGCAGTCGATGCTGCGACAAAAAGAGTTGTGGAAACCGCAATGAGACACCCTCTGATCCAGTCATCATTGACAGGTTTTTCCTCAAGTTTTTCCTGAAATGCAATCAGAACTGTCTGAAGAATGCAGGAAATCCACGAGACATGCGCCGCTTTCAGGTGGTTGTGTCAACGACAGTGAGTGTAGAAGGACACGTTTTGGCTGTTTCAGACAACATGTTTGTGCACAACAACTCCAAACATGGCAGACGAGCTCGACGACTGGACCCATCAGAAGGAACGCCATCATATTTGGAGCATGCTGCACCTTGTATCAAAGCCATTAGTCCCAGTGAAGGCTGGACAACAGGAGGTGCTACTGTCATCATCATTGGAGACAACTTCTTTGATGGATTGCAAGTCATCTTTGGAAGCATGTTGGTCTGGAGCGAGCTCATCACACCTCATGCAATCAGAGTTCAGACCCCTCCTCGCCACATTCCTGGGGTGGTAGAGGTCACACTCTCCTATAAGTCCAAACAGTTTTGCAAGGGCACACCAGGAAGATTCATCTACACAGCCCTGAATGAGCCCACCATAGACTATGGTTTTCAGCGGTTACAGAAAGTGATACCTCGACATCCGGGAGACCCTGAACGCTTGCCAAAGGAGGTGATTTTGAAAAGAGCAGCAGATCTGGTGGAATCGCTTTATGGGATGCCTCATAATAACCAGGAAATCATTCTTAAAAGAGCGGCAGACATTGCTGAGGCCCTGTATAATGTGCCACGAAGCCACAACCAGCTCACTGGTCTCACTAACAGCTCTGTCCATACAAGCATGATGGGAGGTAATTCCTTTACTGGGCAGCTTGCCGTGAATGTCTCAGAATCATCTCAAGGTGGAAACCAGGGTTTCGGTCGTAACACAAGTAGTGTATCACCACATGGCTATGTACCCAGTTCAACCCCTCAGCAGAGCAGTTACAGTACAGTATCTACTAGCATGAATGGCTATGGTAACAGTGGCATGACCAACCTGACTGGCTCCCCAAACTTCTTGAATGGCTCTGCTGCCAATTCACCCTACGCAATTGTCCCCTCCAGCCCCACCATGGCTTCCTCCACCAGCCTACCCTCAAACTGCAGCAACTCCTCTGGAATCTTCTCCTTCTCTCCGGCAAACATGGTTTCAGCTGTGAAACAAAAGAGTGCTTTTGCTCCTGTCATTCGACCACAATCTTCACCTCCACCTACATGCACCAGCACCAATGGAAATGGTGTTCAAGTTATCCCTGGAATGATTGTTCATCAGATGTAG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090814-2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Orthologous to human EBF1 (EBF transcription factor 1).

Ensembl:

ensembl_id ENSDART00000100508

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039678 lncRNA downstream 78486 33637162 ~ 33646880 (-) True XLOC_019743
TCONS_00039677 lncRNA downstream 86725 33637162 ~ 33638641 (-) False XLOC_019743
TCONS_00038863 lncRNA downstream 247403 33465275 ~ 33477963 (-) True XLOC_019742
TCONS_00039676 lncRNA downstream 578841 33145252 ~ 33146525 (-) True XLOC_019740
TCONS_00039253 lncRNA downstream 635693 33058754 ~ 33089673 (-) True XLOC_019737
TCONS_00039679 lncRNA upstream 1649828 35645538 ~ 35650096 (-) True XLOC_019755
TCONS_00039680 lncRNA upstream 2058774 36054484 ~ 36055407 (-) True XLOC_019757
TCONS_00039254 lncRNA upstream 2391076 36386786 ~ 36395906 (-) True XLOC_019758
TCONS_00039681 lncRNA upstream 3583036 37578746 ~ 37582114 (-) True XLOC_019768
TCONS_00039682 lncRNA upstream 3598641 37594351 ~ 37632708 (-) False XLOC_019769
TCONS_00038862 mRNA downstream 495416 33211306 ~ 33229950 (-) True XLOC_019741
TCONS_00038860 mRNA downstream 598669 33093331 ~ 33126697 (-) False XLOC_019738
TCONS_00038859 mRNA downstream 598669 33093331 ~ 33126697 (-) True XLOC_019738
TCONS_00038856 mRNA downstream 692650 33006949 ~ 33032716 (-) True XLOC_019736
TCONS_00038855 mRNA downstream 693745 33006765 ~ 33031621 (-) False XLOC_019736
TCONS_00038869 mRNA upstream 6002 34001712 ~ 34032650 (-) False XLOC_019745
TCONS_00038868 mRNA upstream 6002 34001712 ~ 34032650 (-) True XLOC_019745
TCONS_00038870 mRNA upstream 86008 34081718 ~ 34101917 (-) True XLOC_019746
TCONS_00038871 mRNA upstream 237782 34233492 ~ 34261677 (-) False XLOC_019747
TCONS_00038872 mRNA upstream 237782 34233492 ~ 34261784 (-) False XLOC_019747
TCONS_00038861 other downstream 588283 33136948 ~ 33137083 (-) True XLOC_019739
TCONS_00038828 other downstream 1643217 32076707 ~ 32082149 (-) True XLOC_019725
TCONS_00038827 other downstream 1643988 32073529 ~ 32081378 (-) False XLOC_019725
TCONS_00038821 other downstream 2387581 31337670 ~ 31337785 (-) True XLOC_019722
TCONS_00038809 other downstream 2730817 30974165 ~ 30994549 (-) True XLOC_019715
TCONS_00038875 other upstream 434750 34430460 ~ 34536374 (-) True XLOC_019748
TCONS_00038902 other upstream 3077241 37072951 ~ 37073080 (-) True XLOC_019765
TCONS_00038929 other upstream 4067487 38063197 ~ 38063314 (-) True XLOC_019777
TCONS_00038943 other upstream 4731389 38727099 ~ 38730018 (-) False XLOC_019784
TCONS_00038955 other upstream 5271515 39267225 ~ 39267306 (-) True XLOC_019791

Expression Profile

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