RNA id: TCONS_00038867


Basic Information

Item Value
RNA id TCONS_00038867
length 585
RNA type mRNA
GC content 0.47
exon number 6
gene id XLOC_019744
representative True

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 33724979 ~ 33995710 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGAAGAGAAACTGAGAAATCTAGGTTTCATGTTTGGGATTCAGGAGAGCATCCAAAGGTGTGGGAGTATTTTGAAAGAAGAACCCATCGGAGCCGGCATGAACACTGTCCGAACATGGATTCAAGGCGCCGGGGTGCTGGATGCGAACACGGCCGCGCAGAGTGGAGTGGGACTGGCCCGTGCGCACTTCGAGAAACAGCCGCCCTCAAATCTTCGGAAATCCAACTTCTTTCACTTTGTTTTAGCTCTTTATGATCGACAAGGTCAGCCGGTGGAAATAGAGAGAACCTCCTTTGTCGGATTTGTTGAAAAAGAGAAGGAGACTACAGGAGAAAAGACAAATAATGGGATACATTACAGACTGCAACTTCTCTACAGCAACGGCATCAGAACAGAACAGGATTTTTATGTAAGACTAATTGACTCCATGACTAAACAGCCCATCATCTACGAAGGTCAAGACAAGAACCCAGAGATGTGCCGTGTACTCCTGACTCATGAAATCATGTGCAGTCGATGCTGCGACAAAAAGAGTTGTGGAAACCGCAATGAGACACCCTCTGATCCAGTCATCATTGACAGGT

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000140184

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039678 lncRNA downstream 326215 33637162 ~ 33646880 (-) True XLOC_019743
TCONS_00039677 lncRNA downstream 334454 33637162 ~ 33638641 (-) False XLOC_019743
TCONS_00038863 lncRNA downstream 495132 33465275 ~ 33477963 (-) True XLOC_019742
TCONS_00039676 lncRNA downstream 826570 33145252 ~ 33146525 (-) True XLOC_019740
TCONS_00039253 lncRNA downstream 883422 33058754 ~ 33089673 (-) True XLOC_019737
TCONS_00039679 lncRNA upstream 1650325 35645538 ~ 35650096 (-) True XLOC_019755
TCONS_00039680 lncRNA upstream 2059271 36054484 ~ 36055407 (-) True XLOC_019757
TCONS_00039254 lncRNA upstream 2391573 36386786 ~ 36395906 (-) True XLOC_019758
TCONS_00039681 lncRNA upstream 3583533 37578746 ~ 37582114 (-) True XLOC_019768
TCONS_00039682 lncRNA upstream 3599138 37594351 ~ 37632708 (-) False XLOC_019769
TCONS_00038864 mRNA downstream 121218 33724979 ~ 33851877 (-) False XLOC_019744
TCONS_00038862 mRNA downstream 743145 33211306 ~ 33229950 (-) True XLOC_019741
TCONS_00038860 mRNA downstream 846398 33093331 ~ 33126697 (-) False XLOC_019738
TCONS_00038859 mRNA downstream 846398 33093331 ~ 33126697 (-) True XLOC_019738
TCONS_00038856 mRNA downstream 940379 33006949 ~ 33032716 (-) True XLOC_019736
TCONS_00038869 mRNA upstream 6499 34001712 ~ 34032650 (-) False XLOC_019745
TCONS_00038868 mRNA upstream 6499 34001712 ~ 34032650 (-) True XLOC_019745
TCONS_00038870 mRNA upstream 86505 34081718 ~ 34101917 (-) True XLOC_019746
TCONS_00038871 mRNA upstream 238279 34233492 ~ 34261677 (-) False XLOC_019747
TCONS_00038872 mRNA upstream 238279 34233492 ~ 34261784 (-) False XLOC_019747
TCONS_00038861 other downstream 836012 33136948 ~ 33137083 (-) True XLOC_019739
TCONS_00038828 other downstream 1890946 32076707 ~ 32082149 (-) True XLOC_019725
TCONS_00038827 other downstream 1891717 32073529 ~ 32081378 (-) False XLOC_019725
TCONS_00038821 other downstream 2635310 31337670 ~ 31337785 (-) True XLOC_019722
TCONS_00038809 other downstream 2978546 30974165 ~ 30994549 (-) True XLOC_019715
TCONS_00038875 other upstream 435247 34430460 ~ 34536374 (-) True XLOC_019748
TCONS_00038902 other upstream 3077738 37072951 ~ 37073080 (-) True XLOC_019765
TCONS_00038929 other upstream 4067984 38063197 ~ 38063314 (-) True XLOC_019777
TCONS_00038943 other upstream 4731886 38727099 ~ 38730018 (-) False XLOC_019784
TCONS_00038955 other upstream 5272012 39267225 ~ 39267306 (-) True XLOC_019791

Expression Profile

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