RNA id: XM_021621562.2


Basic Information

Item Value
RNA id XM_021621562.2
length 1613
RNA type mRNA
GC content 0.49
exon number 7
gene id LOC110536048
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 58213243 ~ 58217300 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTGGTTGCGGAGGGAGGTCCCCGCTGCCGAGTAGGAATAAAAACATCTTCTAATTCTCATCAGTGAAAGCTCGACTGGAACTGTCTATTTCCCACTTGACCTGACTGTTGAGAAGTTTGCATTTTACCCTAAAACAGAAGTCTACTAAGCTAGAGAAATGAACAACCCACAGGAGAGAGCTCTTCACGTGGCCACCCCACTGAGGGAGAGCCTTGCCCTGACCAAAATAGCAGGCACCTCTGTCTACCTGAAACTAGAGTCATCCCAGCCCACAGGATCCTTCAAGATCAGGGGCATTGGACACCTTTGCAAGACATGGGCTGAACGAGGCTGTGAGAGATTTGTCTGCTGTTCAGGAGGAAATGCTGGTATGGCGGCTGCTTACTCTGCCCGTAAGCTTGGGGTACCTGCCACCATTGTCGTGCCCAGTGTCACCCCGGAACCAACAGTTGAGAGGCTGAGGGACGAAGGCGCCGATGTGGTCATTCATGGCAAGGCGTTGAATGTGAGCATCGAATATGGACAACAGCTTGTGGCCAACAACCCTGGATGgatcttcatctctccctttgaTGACCCTCTCATCTGGGAGGGCCATGCATCTCTGGTGAAGGAAGTGGAGTCCGAGCTGCAGGAGAAGCCTGGGGCGATGGTGTTGTCTGTTGGAGGTGGAGGCCTCATGAACGGGGTTGTCGAAGGACTGCGTCGCGCCGGCTGGGAAAATGTTCCAGTCGTAGCGATGGAGACCGTGGGGGCACACAGCCTTAATGCTGCTATAAAGGCTGGGAAGTTGATCACTCTGCCTGAGATCACAAGCATTGCCACAACATTGGGCCTGACAAGAGTATCTGCACAGACCCTGAAACTTGCTGGCGAACATACCGTTTACTCCGAGGTGGTCACAGACCAGGATGCTGTCAAAGCTGTCGAGCGCTTTGTTGACGATGAGAAGGTCCTGGTGGAGCCTGCGTGTGGCGCTGCCCTGGCAGCTGTGTACTGTGACATCATTCCCAGACTGCAGAAGGAGGGCAAGCTGAAGCAGGACCTGGGCCCTGTGGTGATCGTGGTATGTGGAGGCAACAACATCAGCATGGAACAGCTCCAGAAACTGAAGCAGCAGTTGGGCATGTCTTCCAGCTAGGCAGACAAACGGCTTTGGGTTCTGCTGATTCTTTCTCCATCACTCCATTCCCCAGATCGTTCCAGCTTTAGCTCCCCTACTTCATTGTGCACTACCAATATGTGCATCTGATTATGAGTCATGAACACCATTGGGCCAAATCATTCCAGACTGTGTGCAGTATACTCCTGAAAGGGCATGACTGGCTGAAGGATGAACTGACTTTCGATTCAGCAATAGCTTACGGTTAAGATAGAAAAGCATTGAAAGGCGTTGATAGGCATACAGTCTACTGCTCTGGCAGTAGTAGTCTTCCAATTGAATTGCCTAGATGATTATCTTCTTGGTTTAAAATGAACCAAGTAGAGTAGTATTGTTGTTTGTATTTAGCATGTTTTATGTTCATGTAAACTATACCATTGGTTGTATTTTCTTCACCCTCTTTTGTACTGTATGAgtgatatttaaaaataaatataattataCACATTT

Function

GO: NA

KEGG:

id description
K17989 SDS, SDH, CHA1; L-serine/L-threonine ammonia-lyase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1135743 lncRNA upstream 104238 58108652 ~ 58109005 (+) True G998013
TU1135742 lncRNA upstream 105018 58108004 ~ 58108225 (+) True G998012
TU1135740 lncRNA upstream 107515 58105518 ~ 58105728 (+) True G998010
TU1135733 lncRNA upstream 119417 58093610 ~ 58093826 (+) True G998003
TU1135731 lncRNA upstream 121799 58091158 ~ 58091444 (+) True G998001
TU1136228 lncRNA downstream 6880 58224180 ~ 58224503 (+) True G998482
TU1136229 lncRNA downstream 8552 58225852 ~ 58226094 (+) True G998483
TU1136232 lncRNA downstream 10007 58227307 ~ 58227579 (+) True G998486
TU1136240 lncRNA downstream 17669 58234969 ~ 58235177 (+) True G998493
TU1136249 lncRNA downstream 26695 58243995 ~ 58244878 (+) True G998502
XR_005034684.1 mRNA upstream 916697 57294321 ~ 57296546 (+) False LOC110536635
XR_005034685.1 mRNA upstream 916697 57294321 ~ 57296546 (+) True LOC110536635
XR_002475497.2 mRNA upstream 919045 57287724 ~ 57294198 (+) True LOC110536634
XR_002475360.2 mRNA upstream 940685 57261546 ~ 57272558 (+) False LOC110536045
XR_005034683.1 mRNA upstream 940685 57261548 ~ 57272558 (+) False LOC110536045
XM_036935892.1 mRNA downstream 145705 58363005 ~ 58378703 (+) False LOC110536052
XM_036935893.1 mRNA downstream 146326 58363626 ~ 58378425 (+) True LOC110536052
XM_021621580.2 mRNA downstream 167538 58384838 ~ 58388397 (+) False LOC110536057
XR_005034686.1 mRNA downstream 167538 58384838 ~ 58388397 (+) False LOC110536057
XM_021621581.2 mRNA downstream 167538 58384838 ~ 58388400 (+) True LOC110536057
TU1135544 other upstream 424072 57787468 ~ 57789171 (+) False G997824
TU1135545 other upstream 424072 57787500 ~ 57789171 (+) True G997824
TU1135543 other upstream 424120 57787468 ~ 57789123 (+) False G997824
TU1135541 other upstream 424120 57787500 ~ 57789123 (+) False G997824
TU1134758 other upstream 1149663 57052109 ~ 57063580 (+) False LOC110536038
TU1136311 other downstream 84285 58301585 ~ 58302987 (+) False G998557
TU1136312 other downstream 84285 58301585 ~ 58302987 (+) False G998557
TU1136313 other downstream 84285 58301585 ~ 58302987 (+) False G998557
TU1136316 other downstream 84285 58301585 ~ 58302987 (+) False G998557
TU1136319 other downstream 84285 58301585 ~ 58302987 (+) True G998557

Expression Profile