RNA id: XR_005034686.1


Basic Information

Item Value
RNA id XR_005034686.1
length 1847
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC110536057
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 58384838 ~ 58388400 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aatgaatacacccagGTCTTGGACCAGGGGCCTGAGGTCAATTTGAGTGGGCACAATCGATTGCCTTTTTGAACCTCGACGCGGCTCGTTTTCCCGTCTTTACGTGGCAGCATTTGCGAGGAAGTTGCGTCCCCCTTCTCCTACTGGCTCCTCCTCCGCAAGTCGGCGGCTGAGCGTTTTGTTCGCTAATCTATTTTTCACATAGCTAAACAGTAGAGAAAAACAACAGTAATCATGTTTACTCTCTCGGAGTGTATGGTCATTTTATCTATGTTATCCGCCACAGCGTCAGGTTACTTCGTAAGCATCGACGCTCATGCAGAAGAGTGTTTCTTTGAACGAGTCAACTCTGGTACCAAGATGGGCCTCATGTTTGAGGTGGCCGAAGGAGGTTTCCTAGACATCGATGTGGAGATCACAGGTCCAGATGGGAAGCAGATTTACAAAGGAGACCGAGAATCCAGTGGGAAGTACTCGGTGGCTGCCCATATGGATGGCACATACAAATTTTGCTTCAGCAATAAGATGTCCACCATGACACCCAAGATCGTCATGTTCACCATTGACATTGGAGAGGCCCCCAAGGGAGACGGCATGGAGACAGAAGGTTCTCTGGAAGACTCTTTCCTTCATATTCCTTCTTCCTTCATATTCATCCTTTTCTCATTCTGCTCTCCACCCTCCATCAGGTGGTGGAGACACCTGGGACGCCCACCAGAACAAGCTGGAAGAGATGATTAATGAGCTAGCAGTTGCCATGACCGCAGTAAAACACGAGCAGGAATACATGGAGGTCCGAGAGAGGATACACAGAGCGATTAATGACAACACAAACAGCCGAGTGGTGCTTTGGTCCTTCTTTGAAGCTCTTGTGCTGGTAGCCATGACCCTTGGACAGATCTACTACCTGAAGAGATTTTTCGAAGTGCGGAGAGTTgtgtaaaacattttatttttcccCAAAAGTATTTACCATTCACTTGAGCTATTAGCCACACCATACTTCAAAATTGGAAATCAAACATCTGAAAATACTTTGTCCAATCTCCTGTTTTTCTGTTCGTGTACTTCAGGCCATGGTACATATGCATGTTTTTCCACTTGCGGAAAACTGTCTTCGCATTGACTCCTCAGACTTTGACATCAATAGCACTGAAGAGGGTATTATTAATTTTTGATCAAGGAAGGTTTGAGTATTTGCACATTCAAAGCCACCGCCCCAAAATGCTGGATGTCATTTTCTCATCTTATAGTTGTGGATAGAATGAGTAGGTGGTGGAAATATTTTTGCTTTTACATAGTCGTACCATCATCCAGAGCgacagtgagtgcatacattttttataCTGGTCcgccatgggaatcaaacccgcAACCCTgctgttgcaagcgccatgctctaccaactgagccacactggACACATTCCAAGCCCAGTGTTGTATTTGATCTGTTATTCTTTCTAAATGTGTTCGTTAGACAACTGTTCAGCTTTTTTTTTAACACTTCCTGTGCCAATCAGTCACAGTATGCACATTTTAATGGTAAAAATACAAAGTAATGGCATATACTTTGTAGTAATGATTCTACCTTTTGGGGCAAGGGCAGTACAAAAAGCCTTGGTATGGGATCTGAGTTGTTGCCAGTTTTAAGTAGTCACTTGAGCATTTCTATTTATCAAATGAGGACAATTTCCTACAGACTTAGTTTATTGGTATTTGTTCAAGGGATGTTTTATTTTGGGTACAGAGGGTGAATAACTCATCTGAGCCAACACACCTGAGAGAGCTCAGACAAACTATGGATGACCCAAGTCCTGTTCATAATAAAAAGTCTCCTTTTCCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1136336 lncRNA upstream 32058 58334736 ~ 58352780 (+) True G998570
TU1136337 lncRNA upstream 46922 58332492 ~ 58337916 (+) False G998570
TU1136263 lncRNA upstream 127470 58257090 ~ 58257368 (+) True G998515
TU1136251 lncRNA upstream 138093 58246226 ~ 58246745 (+) True G998504
TU1136250 lncRNA upstream 138790 58245771 ~ 58246048 (+) True G998503
TU1136576 lncRNA downstream 182401 58570798 ~ 58571059 (+) True G998784
TU1136578 lncRNA downstream 189548 58577945 ~ 58580187 (+) True G998786
TU1136577 lncRNA downstream 195927 58584324 ~ 58585106 (+) True G998785
TU1136647 lncRNA downstream 287352 58675749 ~ 58682620 (+) True G998846
TU1136659 lncRNA downstream 332674 58721071 ~ 58724224 (+) True rilpl2
XM_036935892.1 mRNA upstream 6135 58363005 ~ 58378703 (+) False LOC110536052
XM_036935893.1 mRNA upstream 6413 58363626 ~ 58378425 (+) True LOC110536052
XM_021621562.2 mRNA upstream 167538 58213243 ~ 58217300 (+) True LOC110536048
XR_005034684.1 mRNA upstream 1088292 57294321 ~ 57296546 (+) False LOC110536635
XR_005034685.1 mRNA upstream 1088292 57294321 ~ 57296546 (+) True LOC110536635
XM_021621576.2 mRNA downstream 13515 58401912 ~ 58406661 (+) False LOC110536055
XM_021621572.2 mRNA downstream 13515 58401912 ~ 58406662 (+) False LOC110536055
XM_021621574.2 mRNA downstream 13678 58402075 ~ 58406665 (+) False LOC110536055
XM_021621575.2 mRNA downstream 13678 58402075 ~ 58406665 (+) False LOC110536055
XM_036935899.1 mRNA downstream 13678 58402075 ~ 58406665 (+) True LOC110536055
TU1136311 other upstream 81851 58301585 ~ 58302987 (+) False G998557
TU1137372 other downstream 975504 59363901 ~ 59371176 (+) False LOC110536086
TU1137377 other downstream 975504 59363901 ~ 59371295 (+) False LOC110536086
TU1137378 other downstream 975504 59363901 ~ 59371409 (+) False LOC110536086
TU1137371 other downstream 975531 59363928 ~ 59371176 (+) False LOC110536086
TU1137373 other downstream 975531 59363928 ~ 59371409 (+) False LOC110536086

Expression Profile