RNA id: XM_036935899.1


Basic Information

Item Value
RNA id XM_036935899.1
length 2703
RNA type mRNA
GC content 0.44
exon number 9
gene id LOC110536055
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 58401912 ~ 58406665 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTGTTAGCTATAGTTACTAAAATCGAAGAATATCAACAATTTGGGTTTTGGTTATGCGTCATTAAAATGTTTGCATGATATATAAGTAGCTAATTTCTCTAGTCTTTTGGAGCCTTCTCgtactagctagttaacgttagcacAACAAATTAGCTACCAGCTGTGAGCTCACCATGTAATTTCTTGGTTAGCTTTCTCTCAGTCTGTATTTAATATATTATATGACTAGGTTTTGAATTTGGGCTATGTTAACCTTAAACTTTATAGCTGGAGTAGTGGTAACGTTAGGACAACTGCTGAAGTGCGACACATTATTGTATCTTACCAGGAATATGACTACTTTGCTGAACAATAAtttgtaagtaaGTGGGAGTAAAAGAGTGCTGAAGTATGGCGGCGGAGCAGCAAAGAGGGATCCGAGTCACTCAAGCAGAGCTTCTCTGCAAGGATGCATGCGGTTATTATGGCAACCCTGCATGGCAGGGCTTTTGCTCCAAGTGCTGGCGAGAACGAACCCGTAAAGCAGAGGCGGACAGGCAGGAGACTGGGCCCCACAATGATGCAGGTTCTCCCCTCACCTTTTCTAAATTTGAGGAGAAGAAGAATATGGAGAAGGGTCGCAAAGTGAATACGATGAGGAGGCTCTTCTGGGGTGGACCGTCCCCTCCTAAACGCCCAGAGTCTTCAGAGGGCCAGGTGGCTACATTAAAAGCCTATCAGAGCATTGAGCCAGGGGATTTTACCAGCTTCCTGAAGCTGCTGAGGAACCCATCCTCTCAACGTCTGCAGTCCCGTTGCACTGCTTTCCTCAACACCATGGAGGCTTACCACGGCCTGCCAGTGCAGAAGCAATCTGACCTTGTTCAAGACTTTTACCAGAACATCGCTGTGCATTTCAGTAGTCTTTCAGAGATTCAGGTCTCTCAGATGATGGAGCACATGGAGAAGCTGATCATGACGCGTCTGCACAAGTGGGTGTTCTGCCATGACAGCTGTGACGATGAAGTgaaagacttggcactccagagGAGGATACGGTCCTTAAACTGGGTCACCCCCCACATGCTGAGGGTGCCTTTCCCTGACGAGAGTGCTGAGGTTGTCAGTGATCCCTTTCTGCCTGCTATAACAGCCATAATCGAGATGGATGCCAAGCGCGCGCCACAGGACAAGCTTACATGCGTATGTAAGTGCAGTCAGAATGTCTTCCAGGCTCTCTCCACTTCCAACAGTGAGCCAGCAAATGCTGACGACTACCTGTCTGGCCTGATTTACGTAGTTCTAAAGGCCAACCCACCCCGGCTTCACTCCAACATGCAGTATGTGATCCGCTTCGGCCTCCCTCACAGCCTGATGGCAGGAGAGAGTGGCTACTACTTCACCAATTTGtgttgtgcagTGGCCTTCATTGAGAAGCTGGATGGGCCAGCACTCAACCTAAGCCCAGTGGAGTTTGAGGGCTACATGCAGGGTCGCCGTGCTCCCTCAAAGAGGGGCAGTGAGAGGCAAAAGATGGCCAGGGAGACGCAAGACCAACTAGAGGACCTGAAGGGTCGACAAGAGAAGGTGGACCAAGGAATAAATGCCCTCAAAGAGCAGCTACAGCATTGGGTACAGTCTGTCAAGGCACAGATAGATGAGGTAACATCCCAGTCTGCTCTGACACAAGAAGAAATTAAAGCCCAGTCAGGGTTTTTGCAAAGCCGTTCTGTCTCTACTCTAACACAGGCAGATGATGTCAAAGACCAGTCATTGTTGTTGCTAGATGGTCAAGAGTCCAACAACAACACTTGTCTAACAGAGTGTTAGCCATATTAAGACTGGGGTACAGTGGGAAACCTTTTTACCCTGGTTCTTCATGCTTGTGTGAGCTTTGTGGGGTAAATATTAGTGAGTTGCAGGTGATCGGCTAAAATAAGTATATGTAGGACTATAGGAAGTAGCTTAATTGATAACAGGAGGTACCAAATAAGGGCATACTTTTTTGGTTCGGTGGGATCCTCAAAGAGAAACAGACCTCAACATTCCTTGATGCCAACTTTGCACACCAAAAGCACAACCTGATGACAAATGCCGATCTTGAAACCATTGTTAACACACGCAATTATTTTTGCTATTTGGTTTAACGGGTCACAAAGTGCTGTCATCTGTTTACATTCTTGACCTTGTTTAACGTTTCTAAGGTTCTTTTATTTGTTTGTACGTTACTCTCTTATCTACAAGAAATGTGCTCTTATATGCTGTCAGAGAAAAGCTATGTCTTGCACCCTGAAGTTTAAATATCAGGACAGTTGGACAATTATTTTTGTAATTTAGCACTTACTTGGGTAGTGAGCAGACTTACTATTGATTGCTGCTATCATATTTCTTAGATTACTCAATTAAGATAAACCCAAGTGCCTTTGCAAAAACTAGTAATGAAGATTGTGAATAAAATGTGAAACCTGTTATTGTAGAACCCTGTAAAGTAGAGGTGGCTCAGTCAAAGTAGAATACTTTATTTGAATGTTTGTGATTATGGATTACGTCTTACTTTCCAATATTAGACTGTTGAAGGTACAGTTACAATCCCTTGCATATACCTGTTCTTGTTTAAAAGCTGATTCTATTCCATGTAATCATTCTACTCATTAATAGCACTAACTTTTGTGAAGAACCTTGTTTACATGTTTTAAATAAAGTTTCTGAAGATCATGAAGAAA

Function

GO:

id name namespace
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K20131 RABGEF1; Rab5 GDP/GTP exchange factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1136336 lncRNA upstream 49295 58334736 ~ 58352780 (+) True G998570
TU1136337 lncRNA upstream 64159 58332492 ~ 58337916 (+) False G998570
TU1136263 lncRNA upstream 144707 58257090 ~ 58257368 (+) True G998515
TU1136251 lncRNA upstream 155330 58246226 ~ 58246745 (+) True G998504
TU1136250 lncRNA upstream 156027 58245771 ~ 58246048 (+) True G998503
TU1136576 lncRNA downstream 164133 58570798 ~ 58571059 (+) True G998784
TU1136578 lncRNA downstream 171280 58577945 ~ 58580187 (+) True G998786
TU1136577 lncRNA downstream 177659 58584324 ~ 58585106 (+) True G998785
TU1136647 lncRNA downstream 269084 58675749 ~ 58682620 (+) True G998846
TU1136659 lncRNA downstream 314406 58721071 ~ 58724224 (+) True rilpl2
XM_021621581.2 mRNA upstream 13675 58384838 ~ 58388400 (+) True LOC110536057
XM_021621580.2 mRNA upstream 13678 58384838 ~ 58388397 (+) False LOC110536057
XR_005034686.1 mRNA upstream 13678 58384838 ~ 58388397 (+) False LOC110536057
XM_036935892.1 mRNA upstream 23372 58363005 ~ 58378703 (+) False LOC110536052
XM_021621584.2 mRNA downstream 276 58406941 ~ 58411547 (+) True LOC110536058
XM_021621570.2 mRNA downstream 4988 58411653 ~ 58421796 (+) True cfap251
XM_021621577.2 mRNA downstream 15354 58422019 ~ 58428541 (+) False LOC110536056
XM_021621578.2 mRNA downstream 15360 58422025 ~ 58429244 (+) False LOC110536056
XM_021621579.2 mRNA downstream 15613 58422278 ~ 58428541 (+) True LOC110536056
TU1136311 other upstream 99088 58301585 ~ 58302987 (+) False G998557
TU1137372 other downstream 957236 59363901 ~ 59371176 (+) False LOC110536086
TU1137377 other downstream 957236 59363901 ~ 59371295 (+) False LOC110536086
TU1137378 other downstream 957236 59363901 ~ 59371409 (+) False LOC110536086
TU1137371 other downstream 957263 59363928 ~ 59371176 (+) False LOC110536086
TU1137373 other downstream 957263 59363928 ~ 59371409 (+) False LOC110536086

Expression Profile