RNA id: XM_036935904.1


Basic Information

Item Value
RNA id XM_036935904.1
length 3775
RNA type mRNA
GC content 0.40
exon number 1
gene id LOC118936378
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 58492698 ~ 58496472 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAAACTCTTTTTTTAATGGCTAAGAATAAAAATGTTTGAATAAGCGcataaaaaatgaaaacaaaCCAAATATCTTGGGCTTGATAGGATAAATGATCAATTAATTAGTTAATCAATCACGCATTATATTGTATTTCCTTGTTTTATAATAAGTAAATACAGTCTAGTTTAAAATAACTAGTGTAACTAGTATATAATTGACAAATAGTTTTGTGGTGTAGCCTAAACTATTATCAACTATTATCATAAAGTTCTTTAGGCTACACCTGAGTGCTGGAACATTATTGAGGTGTTTCAGTTTCTGTTTATTAAACACACAAACCATCTTGCTCTTAAAGAAAATCAGAATTAAACTAAACTTAAATTGTAACTAAATCAAGTGAGTTTTGGACCATGTTTCTTTTTTATAGGCCTATGggaatcacaggaggttggtggcaccttaattgggaggacgggcttgtgctaatggctggaatagaataGCTGGAATGGTTTcaaataccattccatttactccattccagctattattatgagcagtcctcccctctgcagcctccactggtgggaATTGCATTCAAGCACCCTGTTATTGCCTTACGAAATAAGCAACACAATCTCACATTCAATTCGtgcaaatatgtacaaaaagtaATTCAGCAGATTTCGTGCATTTTTGTGTGAAAATACACACATTTTTGTGCGACTTAATTCGTAGGAAAAGACACACTTTTGTGTGACTTCATTTATAGtttgcccccccaaaaaaatacctTTTTGGGGGCAAACTTCCAAGCAATCTTTTTAAAGTTATTAGAGCAATGCATTTTGGTAAATGTTCTTTTACGCAGCCTTTGTATGTGTTCCACATAAAACAAACGTGTTAACAACCCAATATTGTTCATCAACCAGGTTTTATTAATGCCAATGCTGTTTTCTATGCTTGTTTTTGCTTAATAATTGTATAATGGTGCTAAGCCGCACAAAATCTGCTGAAATACTTTTTGTAGATATTTGCATGAattgagtgtgagattgtgttgcAACAGGATAGAATAGGGCCGACATATGCAGCTCTTAACAAATGCAGTCTCAGCTaaagcgggaacattgcctttaaatttaaatTATGATGTAAAGCTGAACTTCTGTGATGCGGATTAATACCTCTAATACATGTCTAGACAGCCACTTGTTAAGCATAGCCTAGGTCTAATGTtgcgttcataaccaagtgggaaagCATTTTTGgcagttaaataaaaaaacaaaacattatttataaaaaaatatttaagaaTATGGCTTTTGAACACTATGATTTGTTTACAAGCATAATAGCTGTAATTGTAGTTTATGGTTGACACAGCTTGTGGACAATTAGCATCCAACTGGTATTTCCAACATCACAACTGGTAATTACCACCTTTCCACTTAATTATGGATGCAGCATTACATATTCCACAAACATGGTTTATTATTCTGTGGTGGAGAAAGCCCCATAAGTAGACTGGGCACCAGTCTGTTTGTGTCATCATGCCACTCCTTGTCATGGCAAACAGCtgacatgatagcacaaacatactgtatctgggaccaggctaccgcAGAGACACAATTATGTGTGACCTGCATACTTTTGGTATGAGACAATATAAGTTTGCCACTTGTAGTCTATTGTAGGCCTACTACATATACCAgtagatacagtacatactgaaTGACCGCAGTAATTCCGGAGTaataccaaactttgcatctgcactgttcttcaagaaAAGGTGTTTTTGTAAAGTTCTCAGTGGAAATTGTTataagtagtccttgtgcatagagttgtatggtttgcttAACTTTGCAATAATTTGTTTGACTTACATTTTAAAGTGCCATTTTTTTGTCTCAGTGTCACTCTGTTACAGTGGAATTGCCCATAGGCTACCAGTGCCAATTCTGTCTGCTTGTTGCTAAAACGTATTGTGCTTGCAATTATTTTCAGAACCATGAGGATCCTCTTCAGAAACCTACGCCTCAGTAGATGGTCCATTGTCATTGGGACTGCGTTGGTGTCATTGATTGGTGTCATCTTTATGACGATGGACGTCAATGTCTCACTAACATATAGGGGAGAGCTCAGAGTGTGGCGTAAGAACCACACAGGTTGGCATTGGAACACCTCTGCCTCCACCACACCACTGCTGTCACAGCCTACTGTGGATGTTTTCAAGTGCTCCCTCAATGACAGCATGCAGAATATTCCGTCCTCTGTCCCACCTGCCCACCGTAACTTCCTCATGTATAAACACTGCAGGACATTCCCCCGCCTGCTGTCTCCAACACCCTGTGAGAATGACCTTTTTCTCCTGCTGGCCATTAAGTCCACAGCCATCCAGGTGGATCGCAGGATTGCGCTCCGGAGCACTTGGGGGAAGAGGGGATATGTTCAGGGTAAAAGGGTGAAACTGTTGTTCTTAGTAGGTAAGTCGTTAGACAGAATACAGGGATTCCTGCTGCAGCAGCTACTGGAGTGGGAGAGCAGGCAGTTTGGAGACATCCTGCAATGGGATTTTGAGGACAGTTTTTTCAACCTGACCCTGAAGGAGGTCCACTTCCTGAACTGGTTCACCTTGGAGTGCCAGTGGGCCCACTTTGTGTTCAAAGGGGACGATGACGTTTTTGTTCACACAAGCAATCTGGTTGAATATGTTAAAGGCCACAAGCCCTCTGAGCAACTCTTCGCTGGTGACATAATTTCAAGAGCCTATCCAATCCGGCACAACCAATGGAAGTACTTCATACCAGAGGAGATGTACCCCAACAAGCCATATCCTCCATACGCTGGCGGTGGGGGCTACCTGATGTCACGTCAGACTGTGCTGAGCCTGGGAATAGCAGTGTCCAGCACTGACCTCTTCCCCATTGATGATGTCTTTGTGGGCATGTGcctgcagaagattaatgtgacGCTGACACACCACTCTGGCTTCAGAACCTTTGGGTTCCATCAGGTGGTGTCACATTTCAACCCCTGCATTTACAGGGAGATCATGCTGGTGCACAAACTGAATCCCACCGAGATGTGGACCATGTGGTCTCTACTGCAGGACACAAAGCTGAAGTGCTTTAGATTAAGGATATGAGGCATCAGGTGTTGTGTGTATCTTGCTGTACTTGTCTGTCTCACTACTGTAAAATAAGCATTCCTTTCATAGAGAAATTATTCTTATAAATGGTCAAAAATAGCTTATTTTCCTTCATCGATATTTATATTTGAAGTATTCTGACATATTGGCTTTACTGTGTATTCAGTTCAGCAAAGATGGTGTACGAGCTCTACGGAGATTTGATACTTTTGACAAGGAAGTTTGTAGAATGTTTCTTGGGTTCTAGGAAGGTCGAACAGAAACTTTAAAAACAGGTCTAGTGGGTTACAGAGATACTGATGGGTAACAAACTTCAGAGGTACTGATGGGTAACAAACAGGTCTAGTGTGCTGTGGGGGAGGGGAGCTGTGGTGTACAATTATTATAAACAATCAATTGTTTGAGGGAGCAGTGATGAACTTGTCTACTATAGCTGAAATCTGTGGATTGTAAATGTAGATTTAAATGTGATGTCATAATGCTTTCTGAAACATGTGGTCCAGGGTTTTGTCAGTTTCTATTCAGGTGAACTCTATTGCATAGCGGGGCCAGTACTTTCTTATGATGAAGTAGATTGTGTAAAGAAAATATAAGAGAACAAAATTAAAAGAAATACTGTAATATGAAA

Function

GO: NA

KEGG:

id description
K07971 B3GNT4; beta-1,3-N-acetylglucosaminyltransferase 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1136336 lncRNA upstream 139918 58334736 ~ 58352780 (+) True G998570
TU1136337 lncRNA upstream 154782 58332492 ~ 58337916 (+) False G998570
TU1136263 lncRNA upstream 235330 58257090 ~ 58257368 (+) True G998515
TU1136251 lncRNA upstream 245953 58246226 ~ 58246745 (+) True G998504
TU1136250 lncRNA upstream 246650 58245771 ~ 58246048 (+) True G998503
TU1136576 lncRNA downstream 74326 58570798 ~ 58571059 (+) True G998784
TU1136578 lncRNA downstream 81473 58577945 ~ 58580187 (+) True G998786
TU1136577 lncRNA downstream 87852 58584324 ~ 58585106 (+) True G998785
TU1136647 lncRNA downstream 179277 58675749 ~ 58682620 (+) True G998846
TU1136659 lncRNA downstream 224599 58721071 ~ 58724224 (+) True rilpl2
XM_036935894.1 mRNA upstream 25048 58429295 ~ 58467650 (+) False LOC110536054
XM_036935895.1 mRNA upstream 25048 58430349 ~ 58467650 (+) False LOC110536054
XM_036935896.1 mRNA upstream 25048 58430349 ~ 58467650 (+) False LOC110536054
XM_036935898.1 mRNA upstream 25048 58430349 ~ 58467650 (+) True LOC110536054
XM_021621579.2 mRNA upstream 64157 58422278 ~ 58428541 (+) True LOC110536056
XM_021619943.2 mRNA downstream 1513 58497985 ~ 58500275 (+) True LOC110535071
XM_036936329.1 mRNA downstream 5982 58502454 ~ 58503473 (+) True LOC110535072
XM_021621591.2 mRNA downstream 83782 58580254 ~ 58582889 (+) True si:ch211-110p13.9
XM_036935916.1 mRNA downstream 123375 58619847 ~ 58641904 (+) False kntc1
XM_036935915.1 mRNA downstream 123603 58620075 ~ 58641904 (+) False kntc1
TU1136311 other upstream 189711 58301585 ~ 58302987 (+) False G998557
TU1137372 other downstream 867429 59363901 ~ 59371176 (+) False LOC110536086
TU1137377 other downstream 867429 59363901 ~ 59371295 (+) False LOC110536086
TU1137378 other downstream 867429 59363901 ~ 59371409 (+) False LOC110536086
TU1137371 other downstream 867456 59363928 ~ 59371176 (+) False LOC110536086
TU1137373 other downstream 867456 59363928 ~ 59371409 (+) False LOC110536086

Expression Profile