RNA id: XM_036936329.1



Basic Information


Item Value
RNA id XM_036936329.1
length 1020
RNA type mRNA
GC content 0.50
exon number 1
gene id LOC110535072
representative True

Chromosome Information


Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 58502454 ~ 58503473 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGGACGTCAATGTCTCACTAACATATAGGGGAGAGCTCAGAGTGTGGCGTAAGAACCACACAGGTTGGCATTGGAACACCTCTGCCTCCACCACACCACTGCTGTCACAGCCTACTGTGGATGTTTTCAAGTGCTCCCTCAATGACAGCATGCAGAATATTCCGTCCTCTGTCCCACCTGCCCACCGTAACTTCCTCATGTATAAACACTGCAGGACATTCCCCCGCCTGCTGTCTCCAACACCCTGTGAGAATGACCTTTTTCTCCTGCTGGCCATTAAGTCCACAGCCATCCAGGTGGATCGCAGGATTGCGCTCCGGAGCACTTGGGGGAAGAGGGGATATGTTCAGGGTAAAAGGGTGAAACTGTTGTTCTTAGTAGGTAAGTCGTTAGACAGAATACAGGGATTCCTGCTGCAGCAGCTACTGGACATCCTGCAATGGGATTTTGAGGACAGTTTTTTCAACCTGACCCTGAAGGAGGTCCACTTCCTGAACTGGTTCACCTTGGAGTGCCAGTGGGCCCACTTTGTGTTCAAAGGGGACGATGACGTTTTTGTTCACACAAGCAATCTGGTTGAATATGTTAAAGGCCACAAGCCCTCTGAGCAACTCTTCGCTGGTGACATAATTTCAAGAGCCTATCCAATCCGGCACAACCAATGGAAGTACTTCATACCAGAGGAGATGTACCCCAACAAGCCATATCCTCCATACGCTGGCGGTGGGGGCTACCTGATGTCACGTCAGACTGTGCTGAGCCTGGGAATAGCAGTGTCCAGCACTGACCTCTTCCCCATTGATGATGTCTTTGTGGGCATGTGcctgcagaagattaatgtgacGCTGACACACCACTCTGGCTTCAGAACCTTTGGGTTCCATCAGGTGGTGTCACATTTCAACCCCTGCATTTACAGGGAGATCATGCTGGTGCACAAACTGAATCCCACCGAGATGTGGACCATGTGGTCTCTACTGCAGGACACAAAGCTGAAGTGCTTTAGATTAAGGATATGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1136336 lncRNA upstream 149674 58334736 ~ 58352780 (+) True G998570
TU1136337 lncRNA upstream 164538 58332492 ~ 58337916 (+) False G998570
TU1136263 lncRNA upstream 245086 58257090 ~ 58257368 (+) True G998515
TU1136251 lncRNA upstream 255709 58246226 ~ 58246745 (+) True G998504
TU1136250 lncRNA upstream 256406 58245771 ~ 58246048 (+) True G998503
TU1136576 lncRNA downstream 67325 58570798 ~ 58571059 (+) True G998784
TU1136578 lncRNA downstream 74472 58577945 ~ 58580187 (+) True G998786
TU1136577 lncRNA downstream 80851 58584324 ~ 58585106 (+) True G998785
TU1136647 lncRNA downstream 172276 58675749 ~ 58682620 (+) True G998846
TU1136659 lncRNA downstream 217598 58721071 ~ 58724224 (+) True rilpl2
XM_021619943.2 mRNA upstream 2179 58497985 ~ 58500275 (+) True LOC110535071
XM_036935904.1 mRNA upstream 5982 58492698 ~ 58496472 (+) True LOC118936378
XM_036935901.1 mRNA upstream 7309 58473709 ~ 58495145 (+) False LOC110536059
XM_036935902.1 mRNA upstream 7309 58473709 ~ 58495145 (+) False LOC110536059
XM_036935903.1 mRNA upstream 7309 58473724 ~ 58495145 (+) True LOC110536059
XM_021621591.2 mRNA downstream 76781 58580254 ~ 58582889 (+) True si:ch211-110p13.9
XM_036935916.1 mRNA downstream 116374 58619847 ~ 58641904 (+) False kntc1
XM_036935915.1 mRNA downstream 116602 58620075 ~ 58641904 (+) False kntc1
XM_036935917.1 mRNA downstream 116602 58620075 ~ 58641904 (+) True kntc1
XM_021621596.2 mRNA downstream 146280 58649753 ~ 58690358 (+) False hip1rb
TU1136311 other upstream 199467 58301585 ~ 58302987 (+) False G998557
TU1137372 other downstream 860428 59363901 ~ 59371176 (+) False LOC110536086
TU1137377 other downstream 860428 59363901 ~ 59371295 (+) False LOC110536086
TU1137378 other downstream 860428 59363901 ~ 59371409 (+) False LOC110536086
TU1137371 other downstream 860455 59363928 ~ 59371176 (+) False LOC110536086
TU1137373 other downstream 860455 59363928 ~ 59371409 (+) False LOC110536086

Expression Profile