RNA id: XM_021621591.2


Basic Information

Item Value
RNA id XM_021621591.2
length 2318
RNA type mRNA
GC content 0.41
exon number 4
gene id si:ch211-110p13.9
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 58580254 ~ 58582889 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCTTTCACCAGCATTTCTCTTGTCGTCATCAACATCAAAGCATGAGAGGACCTGCGGAATATTACAATAAAGTTGTTCAATTGCTGTAACTAACTTTCTGGTTTATAATGTCAACATTCACAACTATCCAGTTACCGCGTTGGGATAGTGGCAAGCTGAAAGTTCGCTTCATATACTTGTCAAATAGAAGCTCTTTCAAAGTGACGAGCTGTCCTATCGAGGGATCAATGGTTCCTCTCTTTTTAGGGGCTGATCTCTTCTCAAACACTGATATCCGCACAGAGAACCATCCCAGATATCATGCAAAGTTTGCAAAGAAAGGATTGGCAACTAAACTAAATTTCTCCTCAGCTTTTAGATTCCATGGACTGAGGGTACCCACTGCCAACAATTGCATGTGGTTCTACAGCATCCAAGGTGTTTTTCGAGTGGCCTTTGAAATGTATAGTAAACAAGAGCAGCTCTCTGTGTTGGAGAACTTTCAGGAGGTATGGAAGTCCCGCCTAAATGACATCCCACTAAAGATGAACTACAACCTGAGTGTCCAGCTGGATCCTCCACCACCCCAGATCGTTGTGGAGATGTATGACCAAGACCTAAAGCTCAAACTAATGTCCCGGAATCCCCAAGGTTACCCATCTCAATCTGTGGAAATCCCAGAGGCAGACACAGGCCCTTCAGGTGACACTTCAGCAGACCACGATTACTGCTTTCTGCCAAATGAGAGTATGCCAGCACAGCCAGTCCATCTATGTCCCTCCATCTTAAGTCAAAAACTGCAGGGCTTGGAGGAAAAGCTGAGCTCTGAGAAACAGCTGGGGACCGACCAGCAGGAGACCATACTGCTTCTGTTGGAGAGCATTGAGCGCTGTGTGAGCAGGCCCCTGGAGGAGAGGGATGTGGCGGACATTGTACTAGCTCTGCTAGAGGCTCGGAAGTGGGGCTCTGTGTACTCCAGCCACCTGCTTCACTCTATAGGCTGCTGGCTTGGCCAGCAGTTCCATGGAGCCAACAGTAGTATCAGCCAGCAGGTAGAGGGCTTCAAGGTGCGACACATAGAGCGAATCACAGATCTGCCACCTGCAGAGGAACTGGCCTCAGAGCTTTTTCCAGAGGCCATGCGAACACTGCTGCTCCACTGGATGGGTCTGAGTGATGACTCAACCCTGtggaagagacagagtgagtacCCCATCCTGCTCCTAATCCTGGAGTTTGCCAACCACAACCTCATCACTGGTGTTGCACATGTGCTTTACTCAAGTCTTAAGGTGAATTTAGATTTAGCCAACTCAAAAGAGTTAAGTACCGAAGAAAGTAAAACtactgttgtaaaaaaaaatactcaaGTAAaaattacttgagtaaaagtaaatgagTTACTTTTAAAATTAAAACATTGATTTAATTGATAATTAGCTATTTTTTTCCACTCGAACATTGTTACCATAGAGATCATGTTGAATTTCTATTATTACTATTCTAGTTCCTAATTTGTTACACATGATCTTTTCCATGCAATTACTTTAAGAGGAATTTAATGTAAAATCTCATTAGAAATGAGGTGTTGTTTTTGGTGTGAAAGTAATGTTATAGGCCTACTATGCTATGGTATGTATTATAGTCAATTCTGTTATGTAAAATGCAAATTATCAATGTGATCTTgcaagacattgattcagctttgatctaacaTTTCTAAATGAGCACCATTGTAAGAAGTGATCttctatttgtaataataatGAGTATGACTATTAGGCATAGGTAATAGATCTTTATGAGATGTCATTTTAAGCAATTGGAGCACCCTTCATGGTGCTGAAAGTACAGCGCCAGGGTTGCACTGTTGGGGCAAAATGGTTTTGTTAGTCTAATGCTATGTAAATGCTTGAATTGAATAGTACTTTACACTGGTAATTTTCCCTGCAATTGCTTCAATAAACTCTTATTGATGATTCCTGGAACAAGTTTTATTCAAGCAATTTAACCAGACAAAAAAAATGTCCATGATTTGTGGGATTTTCACAAAATGTAGTCCATAGAATAGTCCTTCGGAGGAAGAATTGttgacatatacagtgcattcggaaagtattcagaccccttgactttttccacattttgttacgatagagccttattctaaaattgacaaagtaaaaacaggtttttacacatttttgtaAAGAAAAACCTCACGTTTACATATGTAATCAgacgctttactcagtactttgttgaagcacctttggaagcgattacagcctcgtcttcttgggtatgatgctacaagcttggcacacccgtattttgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1136578 lncRNA upstream 67 58577945 ~ 58580187 (+) True G998786
TU1136576 lncRNA upstream 9195 58570798 ~ 58571059 (+) True G998784
TU1136336 lncRNA upstream 227474 58334736 ~ 58352780 (+) True G998570
TU1136337 lncRNA upstream 242338 58332492 ~ 58337916 (+) False G998570
TU1136263 lncRNA upstream 322886 58257090 ~ 58257368 (+) True G998515
TU1136577 lncRNA downstream 1435 58584324 ~ 58585106 (+) True G998785
TU1136647 lncRNA downstream 92860 58675749 ~ 58682620 (+) True G998846
TU1136659 lncRNA downstream 138182 58721071 ~ 58724224 (+) True rilpl2
TU1136699 lncRNA downstream 180002 58762891 ~ 58819490 (+) False LOC110536071
TU1136737 lncRNA downstream 238448 58821337 ~ 58821552 (+) True G998928
XM_036936329.1 mRNA upstream 76781 58502454 ~ 58503473 (+) True LOC110535072
XM_021619943.2 mRNA upstream 79979 58497985 ~ 58500275 (+) True LOC110535071
XM_036935904.1 mRNA upstream 83782 58492698 ~ 58496472 (+) True LOC118936378
XM_036935901.1 mRNA upstream 85109 58473709 ~ 58495145 (+) False LOC110536059
XM_036935916.1 mRNA downstream 36958 58619847 ~ 58641904 (+) False kntc1
XM_036935915.1 mRNA downstream 37186 58620075 ~ 58641904 (+) False kntc1
XM_036935917.1 mRNA downstream 37186 58620075 ~ 58641904 (+) True kntc1
XM_021621596.2 mRNA downstream 66864 58649753 ~ 58690358 (+) False hip1rb
XM_021621595.2 mRNA downstream 66865 58649754 ~ 58690358 (+) False hip1rb
TU1136311 other upstream 277267 58301585 ~ 58302987 (+) False G998557
TU1137372 other downstream 781012 59363901 ~ 59371176 (+) False LOC110536086
TU1137377 other downstream 781012 59363901 ~ 59371295 (+) False LOC110536086
TU1137378 other downstream 781012 59363901 ~ 59371409 (+) False LOC110536086
TU1137371 other downstream 781039 59363928 ~ 59371176 (+) False LOC110536086
TU1137373 other downstream 781039 59363928 ~ 59371409 (+) False LOC110536086

Expression Profile