RNA id: XM_036935916.1


Basic Information

Item Value
RNA id XM_036935916.1
length 7622
RNA type mRNA
GC content 0.50
exon number 62
gene id kntc1
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 58619847 ~ 58641904 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGCTATTTGAATCAGCTTCCTCTTGGTTTGAGAACGACTTCCATTCCGCCAACTCAATCTGGGGAGTGCAAATAAATATACAAAGAACACCATATCAGTTCACTATTATTTTATAATAGCCTTTTATTATTTGAATTGAATGATTCAAATGAACTTTATCAGTTTGAGTTCAAGTATGCGCCTGTAACTACACAGGAAgtAGGTGGACGGAAAAACAATGTGGAACGACGTTGAACTTCTAATCAATGAGGATACCAACACAGGTCGCCTTTGCAATGTTCGAGAGGAGAATAGTGGTCTGTACCAAGTGGATACTTTGGTCAAAATTGCCTCAACTGAAAAGGTGTTGTCAGATCCTCAGCTTTACTCCTCCAGCAGTTCAAACTGCAGCATTGTTGTTGCTGATTCAACTGTTATCCTGTTCGACCTCAGCTATCAGACTATGTTGCTGCATCTTGACTTTGACTCTGATGTGGATACTGTGGATGATTGTCTGGACGGACATTTTCTGGTGGTTTGCCAGAGAAACGGAAACCTCCATCTTATCTATGTGCCTCAAAAGAGCACTCTTCTCACCATAGCTTTGCTGAAGAATGTCCCCTCTGGAAAAGAGAAAACATATCGACGTCTTATCCTACAGGAGGATAAGACATCTTTCGGGATGTACCACCTGTTCCTTCTTACTCAAGATGGATTTTTTCACATCACAAACCTTGCCCTGGAGAAGATTCAAATAGCTATTGAGAAAATGGACATTGGGGCTTTGCAAGAGCTCCAGTCTCTAATTAAGACAGACTTCTGTTCCACCAAGGAGATCCATGGAGGGGGATGTAACACAGCAGTGATGTGCAACCTTGGCAATGAAATCCACCTCATGATTGGGGCGGACGGGGAAGCTGTTCTAACCCACTGGAGATTGGATCATAGTCAGGGCACgatgtctctctgtcagtccctGGACTCCAGCCTAATACCAGGGGTGAGAAAGATTCTGGTGGTGGACAATCTCATGTATGTTCTTAGCACAGAGAACATTCTGAGTCTTTGGGACCTGCATTTCCTGGTGATGGTGTGCTGCTGGCCTGACCTCTCCATCCATGACTTCCTACTCATCACAGAGTGTGACTCTGCTTCAATAGCCACGCAAGAAAGTGCCAGCACAAAAATCATTACATTGACCATGCAAGACAAAAGCCAGATGAGGAGCCTGCAGGTGCGTTCTCTTCCCTCCATGACTGTCCTCTATTCTCTGGAGGTCTCCTCTACAGCCTGCCTGGTACAGACAAGAATAAGCACGGACACTATATATTTGCTAGAGGGGATTTATGAGAATTCACAAAACTCTGAGGAGCATATATCCTCTGTCGTCATGAGATGCTTCACAGAGGCTTTGCCTGAGAACAGACTCAGCAGACTTCTCTACAAACACAAATTTGAGGAGGCAGAAAAGTTTGCCATAGCATTTGAGCTTGATGTTGAGCTTGTCTATAAGGTGAAGCTGGATTTTGTGCTGGAGCAGCTGGCGTCAGCCTCTGTAGGTGGCAATGGGCAGGACGTATGGTCTGACCTGGTGGAGGAGGCAAAGACCAACCTGATGAAGATCATGgatGAGCAGTATGTGGTGGAGTACTGCCTCAAGGCTCCGTGGCCGACCTTTGACACTGCAGAGAAGATGCTGAACCATGCCGCCTCCCGCTGCCCCTCCTCACAGATCCAGGAGGCTCTGGCTAGACTCGCCACCTTCTGCTGTCTCCACAGCCTGGACAAGTTCAATGGAATCTCCTGGATTGAGTTTCTGAACATCACAGACTACGTTGGGGACATGCTGTCCCACTTGAGAGAGGGAGACCTGAAGGGGGCCCAGCACCTTTGGCTTAGACACGAGGGAGAGATTGCAGTGCAGTTTGATGAGAGAGGTCTTGATGCTCTGCTCAGCTCCTTTCCAGAAGACCTTCCATCCCAGGACCTTTGTCTCTGGCTTAGGAGTGTCATTGTGCCCTTTGTTAGGAGAGTGGTACCTAGAGGACAGAAAATCGTTGCGAGGTGGTTGGAGCAGAGGGCCAGGATTCTGGAGTTAACAGAAAAGGGAGACTGGCCCCAGAATGGACTGAACTTGGCGGAACTTGGGTTGCCGTCGTTATGGATGTGGATACCTTCTGAGGATGACTATGGTTCAGAGGAAGTGGAGCACCTCAAGTCCCTGGTCTCTAACCTCCGCCAGCTGCTGGACCTCTACAACAAGTACAACTGCAGGCTCTCCCTGTCAGTCTTTGAGAAGGCAAGTATCCGCAGCGTAGCATTCCTCATGCTGGATAAGGTGCCTGCCCCAGAGCTGATCTCTGCCACGGTGGAGGGCAGTGTCAGGCCCTACAGCCTGGAGCACCAGCTGCCCCTGGATGAGCTGCTGCTTCAGTACATCAAGGATCTGCTGGAGCGCTGCAGCTCACAGACCACTACGTTGTTCACAGAGTGGGAGGCCAAAGCTGTGGCTGTGCTTGGCTGCATCACGGACACTGACCTGGTGGTAGACGCTGTGCTGGAGATCATGCAGAAGGCCGTGGTGCCCTGGACTGAGGTAGTGGAGAGGCTGGTCCAACAGCACTTGGAGATGGTGGGACCCAAGCAGGAGCTTCTGAAGGAAAGCTACCGTCTGATGGAGATGAGGAAGCTGCTCAGAGGCTACGGGATCCGCAACTTCAACCTCTCCAACAACACTCAAATCATGACACTGGTGAGGTACATCCTCAAGCAGGACCTCCCCACCTCCCTGGAGGACTCTCTGAAGCTGGCTGGGGCCTACAAACTCCCCACCTCCCAGATACACATCTTATACCTCATCCAGCTGATTAGCCAGAGCAAGAGCGAGCCATGTGTGACACTCCTGAAAAAGCTCGCCCCCGAGGAGGCAGAGTGTGTGATCGAGAGGCTGGCTAACTGGGCACGACTGGAGCTGCAGGACAAAGACCATGTGTCTGAGGAGCACAAGAAGCACCAGATGGTCGTAGCACAAGTGATGGTGGAGGCACTGACGTTCTTACAGCGGATCCAGAAAGGGGATGCCTTTAAAAGTGTGGATTGCGAGAACAATCTGATGATGTTTAAGGCGATTGCTCACCTACAGGAGGACTTTGACATCTTCCTCACCCCTAACAACTATGAGGACCCCAAGGTGCGAAAGCAGTTCCAGGAGTATCACATCACAGCCTATGAGAACACCCGTGCTCGAGGTCCCTCCAAGAGCAAGGTCACAGCCACCCCCATGGTGGCCAACGACCCTGACGGCAAGACCAAGAACATCTCCACTGAGGCTGGCCTCCGCCGCTTGGCACGGCAGCTCCAGCGTACGGAGCAGGAGCTGTGGGCTGACTTGGCCCTGCGTGCCCTGGGGGTCGGCAAGGTCGACAAGGCCCTCAAGATCCTCAGTGAGCTGTATAAGCACCATGGTACCACCAGCACAGGGAAGGTGCTTTTCAGTGCTGCCCAGAAGCTGTGCCAGATGCTGGAGGCAGACGTGCCCATGATCCTCCCTGAAGGCGTGGACCTCCCAGCAGTCATCCACAAGCTGGCCTGCCAGGCCGTCACTGTCTGCCACTCAGACCTGCTCCTGGACTGTGTGGAGCTGTGTAAGAGCACACGGGCTGCCATGGATGTCTACCACCAGTGTCAGCTGTCAGACAACTatggcttcatagcaaagGATTTGTCCCTGGCGGCTGAAAGGGACCCTTACTCCCAGTGGAGCTTCCAGGATGTCTTTAAAGAGGACTGCATCATCCTGGACCCCGTGTCTGTCCTGCCAGTCCAGTATGAGATCACCAACTGTCTGCTGCCCTTCTCCTCAGATAGAAAGCTTTACCCACTGGACTGCTCCTGTCTTTCTCACTGCTCTTTCCAACAAGATGCCAACTTCCTGAACCCGCTACTGGTGCCCCTGGCCTCCATGCTTCAGATGCTGCAGGAGTGTAGTCAATTGGAGCTGGCCCTCAGACTTCTGGTCAACTCCTTTGGCAGCTGTCTGCAGCACGTCACCTCCAACATCATGAACATCAAGCTCGGCATTCAGCTCTATGGTCCGCAGGCCCTGCAAAAATATAAGGCGTGCTTGAGTGATTTGAGAACAACTACTCTGTCCTCTATCAATGCTGTTGCAGTTGCCCTCCTGCACAAGGTGTTTAACTGGAGAGTGGTGGATTGTGACCTGGCTATTGGACTCTGCACTCTCCTGTCCAAAACCGAGGTGTTTAAGATACTGTGGAAGGTGATCGACAACACTTGGCAAAACTATGATAAGATCTTGGCTGTGGCTATGGTGGGGGCCCATCTCTGTAACTTGTTCACCGAGCAGGAGGAGCGGAAGAAGTTTCTCTCGGTCATCACCGACGCAGAGTGGGGGATCGAGCTGGGCAAATTAGGGatatccatCCAGTCTGTGTTTCGTCAGTGTCCGGAGATGAAGAGTAACCTCATCCCTACCCTGGTGAAGAACAAGAACACCACCCCTGAGATTATCCTCCAGTACTGCAGCACCTTTGATCTGAACAGAGACGAAGTGATAAACCAGTACATCACCACCCTgctgctggaggaggaggaggaggggggaggggcaggAGACCCTGGGGCGGGCCAGGGGGAGCAGCCGCTAGGGCATGCAGACGCCCTGGAGAGAGCTCTGCAGATCATCCCTATGCTGCACAGCACCAGAAACCTCACCATCAGCCTCAGTGCTGCCATACTCAAGCTAAGTCCATATAACTATGAGAGGATTGAGGGGGTGCTCAGGATCATACAGACAGCTGATGAGCAGATCACCAGCATCTCAATCAGTCAGGCAATAGGTCTGCTCCAGCACCTGAAGTCCTACAAGCGCATCTCTCCCCCTACAGACCTGGAGAGCAGCCACCTTCTGGAGAATGGCCTGGAACCCTCGGCCCTGGCTAACATCAGACTGCCCTTCCACCTGCTCATGCAGACCACCAGCTACTGGAAGATCCTCTCTCCAGAGCTCAGTGAGGAGACCTTTCCTACTCTGCTTCTGATAAGCAAGCTGATGAAGGTGAGCGTTGACAAGCTGTACATGTCAGCAGTGAACCATGTGTTTGAGAGGAGTATGAAGCCCTTACTCCTCGAGCAACATAAGAGGAGGCAAAAGCACACCTCCAGCAAGGAGACCTTCAAGGTGGCTAAGACCATCATGGGGTACATTCACTGCATCCAGAACCCAGAGTGGGCCGCTGCCACAGCCCATAAAATCGCTCAGGAGTTGCCGCCAGGCACTGAGAAGACCCAGTCATTAAAGTTCTGCCTAGCTCTTGGTGACGCATGGCTGAAGGACCCAAAACTTGAGCAGGAGGCAGCGCGGACCAGGGTGGAGACCTTCCTGTCCAAGCTGAAGCTGCAGTTCCAGCGCTCGGCCACAGAGAACGTCCTGATGTCCAGCCAGTTGAACAGCCCAGAGCACCTAAAGCTGACAGGGCAGCCCGCCCGCCTCATCGTCATCCTTTACGAACACAGCAGTGTAGAGCAACGCTTCAGGGGCTCTGCTGGCCAAACCCACCCTGACATTCACGCTGTATGCAAAGAAATAGCAGCCATCAATAGTGTGGATTTTCTGAAGATCCGAAGCATGCTGCTGGAGAAATGGATCTGCAAAACCGGCCCAGCTGTAGCCAAGGACATCAACAACCAGGATTGTGTCAATGACATTCAGGAGGATTCAGATCTTATGAGGGTGGTGTACCTACTGCAGATCTATTCCATGGATGTGGGAGTCTGTCTGTTGAGCCCTATCCTCTCAGCAGAAACATGGCCCCTCAGCAGTTCTGGGCCACGTCTTACTTTCTGCCACCGGAGTCGGGCCCTGCTTTGTCTCATCCACATcgctgaccccaccaccctggaaACACAGTTACACATCCCCAAGACACAAGTCCAGTATTACCTGAAGTGCTACATCTACCTGTCTCAGCTGGAGGACCTAAACATCCCTTACACTGTGGAGTCGTTCCTCAACAGTCCCAAAGAGGGCATGGTCAAGGGACTGTGGAAGAATCACAGTCATGAGCCACAGGCTGTGCGTCTGGTGGCAGACCTTAGCCTGGAGTACCAGGTGTTTGACCCTCAGCTGTGGAATGGGTTACTGCAGAAACTACTGGGCTTCAACATGATAAGCGACTTGCAAAAGGTATTGGAGGCACTGGGAGCTGTCCCCTCTCTATGGCAGGTATCCAGTTTTTCCAGGACCTGGAGAAGTATGATCCTGGCCCCATTCGTATCAGCGTCTCTTCCTCTGAGCCCCCAACAGCAGGCAACCCTCTACAGGACCTTTGTTCTCCTCCTTAAGTGCCCGTTCCTGTTGAATCTGGACCTGATAGGCATCGCCAATCGCTTTGCCCAGTTCAGTCTGCCAGGCTTTGCCCTAGGTGCCCTCCTGCTCATCCCCTGTGCCAAGAGGAAGGGACAGCAGATTCAGGGCCTCCTGTCAGCATGTAACCCCATCACCATCCTGGAGCAATTGGATGAGCATATGAACACTGGGGAGTTGGCAGGGGTTCCCTCACAGATAAGGGACACAGTCTTGATGTTCATTTGCCAAAACAGGCAGTATCAGAAGCTGTGGAAGACCAAGCACTTTAATCTTCTCAAGCAACACATTGTTTCAAGTGGTGACTCCAACCAGGTGAAGAACCTGGTAGATTATTTGATCTCCCACAGCTGTGAGGAGGATGCCAACTCCCTGGCCCATGAGTATCTGAAACACAGGGAGCGTAAAGTGAAACTAATACCAGACATGTCCCCTGCATCCAGTGCCCTGAAGAGGTTTCTCAGCATCGATATAGATAAGTAAATGGTGTGGATATGAACAGGATGAAGAACACATATGAGACATAAAATGTATTCACAGTATGTTTATTCAAATGTGTGTCTCTTTGGACTAGAAATGCAATGTTTGCACTTACTGTCTCCTTACTCAATCTATTCACATGTAATATTCACTGTATCTATTTTCTATGAACTACACACTAAACATTTGTTTCTGGTGAAATGCTTAATTTTCAAGACAAGGGAAACGTTATAGTGGAATGACTAATGACCTTTTTATTACAACATACAGTTATCAAGCAATATAAAAAGTTGTCTACAGTTATTTTAGTTAAAGCAGCaattaacatttacattttagtcatttagcagacgctcataTCCAGAGAGACTTGCTTTTTACCTTCAATTTCCTGTCCTACACCATACCAGTCTCTGTCTTGCCTACATGTGTGAAAACATTGATTTTCTTCATTctgtagtaaaaaataaaggaagtgaaggcccagtgcagtcaaaatgagtttttcctgtgttttgtatcacattATTCAACACTTCACTTCACACACACTCAAAGTGTGAAACAATTTGATCAGCCATCACCAGGCTGTAAATTAGTTATTAGATCAATAAGAAAAGTTCAAAACCTCTGCTAGTTATTATTTTTTCTCTCCCCACTCATGCCACTCatagacagtcctagcaaaattcttgtttGAGATATTTTTGTTACTTGACATGTCTGTATTTGAACATTACAAACCATCTACTTGgtactatccaaataaagtgtta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1136577 lncRNA upstream 34741 58584324 ~ 58585106 (+) True G998785
TU1136578 lncRNA upstream 39660 58577945 ~ 58580187 (+) True G998786
TU1136576 lncRNA upstream 48788 58570798 ~ 58571059 (+) True G998784
TU1136336 lncRNA upstream 267067 58334736 ~ 58352780 (+) True G998570
TU1136337 lncRNA upstream 281931 58332492 ~ 58337916 (+) False G998570
TU1136647 lncRNA downstream 33845 58675749 ~ 58682620 (+) True G998846
TU1136659 lncRNA downstream 79167 58721071 ~ 58724224 (+) True rilpl2
TU1136699 lncRNA downstream 120987 58762891 ~ 58819490 (+) False LOC110536071
TU1136737 lncRNA downstream 179433 58821337 ~ 58821552 (+) True G998928
TU1136697 lncRNA downstream 196077 58837981 ~ 58842749 (+) True LOC110536071
XM_021621591.2 mRNA upstream 36958 58580254 ~ 58582889 (+) True si:ch211-110p13.9
XM_036936329.1 mRNA upstream 116374 58502454 ~ 58503473 (+) True LOC110535072
XM_021619943.2 mRNA upstream 119572 58497985 ~ 58500275 (+) True LOC110535071
XM_036935904.1 mRNA upstream 123375 58492698 ~ 58496472 (+) True LOC118936378
XM_036935902.1 mRNA upstream 124702 58473709 ~ 58495145 (+) False LOC110536059
XM_021621596.2 mRNA downstream 7849 58649753 ~ 58690358 (+) False hip1rb
XM_021621595.2 mRNA downstream 7850 58649754 ~ 58690358 (+) False hip1rb
XM_021621597.2 mRNA downstream 11742 58653646 ~ 58690358 (+) True hip1rb
XM_021621599.2 mRNA downstream 50189 58692093 ~ 58718822 (+) False LOC110536067
XM_021621598.2 mRNA downstream 50189 58692093 ~ 58720484 (+) False LOC110536067
TU1136311 other upstream 316860 58301585 ~ 58302987 (+) False G998557
TU1137372 other downstream 721997 59363901 ~ 59371176 (+) False LOC110536086
TU1137377 other downstream 721997 59363901 ~ 59371295 (+) False LOC110536086
TU1137378 other downstream 721997 59363901 ~ 59371409 (+) False LOC110536086
TU1137371 other downstream 722024 59363928 ~ 59371176 (+) False LOC110536086
TU1137373 other downstream 722024 59363928 ~ 59371409 (+) False LOC110536086

Expression Profile