RNA id: XM_021621596.2


Basic Information

Item Value
RNA id XM_021621596.2
length 4809
RNA type mRNA
GC content 0.50
exon number 32
gene id hip1rb
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 58649753 ~ 58690358 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGTTATATCCTTCGGTAGACGAGGCTCCACGTACAGCAAACATAGCATTCATTTCGCGTTTTCCTCCTCTGCCTGTGAGTTCGCAGTCTACATACAAATGCCACTCGTGGACGCCGAACCGATTGTTCGCGCGTTGCTTCTACTAAAAACGACAAGGAGTGTCTTACTTTGACTGCTTTATAATCGATAATTTTCCTCAATAGTGGGTATTTGTTACAAGCATTCGATATCGTCGAAGATCCAGTAAGGTTTCCGCCGGGTGCCAAGACGTGAGGATGAATTCCATACGACAGGTGCCTTCAAGGGTGAAAACCAAAAGGACCGAAACGAATTTAGGTGCTGAGAGGGAACATTTTGATAAACAGCAGcTCAGCAGCATCAGCAAAGCCATCAACTCCAACGAGGCGCCTGTGAAAGAGAAACATGCACGCCGGATCATTCTGGGGACCCACAGAGAGAAGGGAGCCTTTACCTTCTGGTCCTATGCCTTGGGCCTCCCTTTGTCCAGCAACTCCATCCTCAGCTGGAAGTTCTGCCACGTGGTGCACAAAGTGTTGCGGGATGGCCACCATAACAGCCTTCAGGACTGCATGAGACATCACAGTAACATAGTTGAAACAGGGCAACTATGGGGCAACCTTCATGACAGATATGGCCAGCTGGTGGCTCTGTACGCTAAGCTCCTCTGCACAAAGATGGAGTTCCACGTGAAGCATTCTGAAATCCGAGCCAACCTAGAGGTAACAGATGAGGTTCTGGAGCGCGTTGCAGGAACAGACATCAataatgtGTTCCAGCTCACTGTGGAAGTGTTTGATTACCTGGATACAGAGCTGAGGCTAGCCGAGACAGTGATCCGGCAGCTCAACACGTCCATTGCCATCTCTACGCTGACGTCAGGCCAGTGTCGCCTGTCCCCCCTCATCCAGGTCATTCAGGACTGCAGTCACCTCTACCACTTCACCGTCAAGCTGCTCTTCAAGCTGCACGCTTGTCTCCCAGCAGACACCCTGCAAGGACATCGTGATCGTTTCCATGACCAGTTCCACAGCCTCAAGACCTTCTTCAACAAAGCCAGAGACATGATGTACTTCAAGAGACTCATCCAGATCCCCAAGCTGCCAGAATCCCCTCCTAATTTCCTGCATGCGGCTTCCCTGGCCAAGCATGCAAGGCCAGTGGTGGTCATCCCAGACGAGGATGAGCCCGAGCAGGTGGATGATGAAGATGACGACCCTGAACCGCTGATCAATGTCAGTGACGTCACCGTGCCCAGCATGGCGGTGCCACAGTTCGACATATTTGATCAAACCTTTGGACCTGCCAATGGTGGTTTTGATGACAGGGATATCCAGATTGAGAACCTCAAGCGGGACTTGGAGCTATTGAGGACAGATCTGGAAAGGGTCAAAGGAGAGGCCCAGCGCTACATCACTCAGCTTAAGTCCCAGATCAACAGTCTGGAGGCggagctggaggagcagcgggtACAGAAACAGCGTGCCTTGGTGGAGAACGAGCAGCTGCGCATGGAGCTGGAGGCCACACGCCGCCGCAATGCTGAGCATGAGAGTGTGCAGGCCACCTTCGGAGAGGCCGAGACAAGAGCCCAGGCCACAGAGCAGCGCTATAACAAGCTGAAGGAGAAGCACACTGAGCTAGTGTCTAGCCATGCGGAACTGCTCAGGAAGAGTGCAGACACAGTGAAGATGCTGTCAGCCACCCAGCAGActcaggaggaggtggagaggactaAGCAGCAGTTGGCTTTTGAGGTGGATCGCATCAAACAGGATGCTGACATGAAGCTTGAGGAGCAGAAGTTTGAGATGGAGAAGCTTAAAAGAGAGTTTGAGGAGAAGAAGGCAGAAGTGGAACGTGTCAAAGGCACTCTGCAGAGCAACGAGAAGgtgGGGGAACAGCAGACCAGATCCATGTCCGCCCTGCAGGCGGAGAAGGAACGTCTGATGCACTCTGTGAGTGAGAAGGAGGCAGCACTGTCAGCCCTGCGCCATGCTGCACAGCTGCAGCAGTCATCCCTgcagcaggagagggagaggagcaccAGGGAGCTGGGAGAGCTGCAGGGCAGGCTGCAGGAGAAGTCTAGCCGTGAGGAGCAGCTGCAGCAGAAGCTGCTGGAGGAGCAGTTCTCTCTGCTGCAGGGAACGGTCTCTGAGGCTGAGAGCATCATCCAGGATGCTGTGGCCAAACTGGATGACCCCCTGCACATCCGCTGCACCAGCTCCCCAGATTACCTTGTCAGTCGGGCTGATGCCACTTTAGGCTccattgacaaagtgaaaagggGTCACTCAGACTACCTGACAAACATGGGAGATGTTGGTGGGCTGCTGAGGGCCCTGACCCAGTTCTCCCACCTGGCTGCTGACACCATCATCAACGGCAGTGCCACAGCGCACATGGCTCCCACCGACCACGCCGACCGTCTGACTGAGAATTGCAGGGGCTGTGCCACTCATAGTCTGCAGTTCCTGAAGGACCTCAAGTCCAAGGCCTCTCTCCAGAGGGCAGATCCGGCCTCCATTCGCATTGTGGTCCAAAAGATCCTGAGGCTGGGGGAGGAGCTGCGACCTAAAGGCGTGGATGTGCGACAGGATGAGCTGGGAGATCTGGTGGACAAGGAGATGGCAGCAACATCAGCAGCCATTGAGGAGGCAGTGCGCAGAATCGATGAAATGATGAATCAGGCACGAAAGGACACCTCTGGCGTCAAACTTGAGGTCAATGAACGAATCCTCTACAGCTGCACAGACCTGATGAAGgCCATCCATCTACTGGTCCTGACATCAACCGACCTACAGAAGGAGattgttgagggagggaggGGTGCAGCCACTATTAAGGAATTCTACGCCAGGAACTCCCGTTGGACTGAGGGACTCATCTCTGCCTCCAAAGCTGTGGGATGGGGAGCCACACAGATGGTTGAGTCTGCTGATAAAGTGGTGCTGCACACTGGTAAATATGAGGAGCTCATCGTCTGTTCACACGAGATCGCTGCTAGTACAGCACAGCTGGTTGCTTCCTCCAAgGTAAAGGCAGACCGCAACAGTACGAAACTGACAGCTCTCCAGCAGGCATCTCGCCGTGTGAACGAGATGGCGGCCAACGTGGTGGCCTCCACCAAGACAGGCCAGGAGAACCTAGAGGACAAGGATACCATGGACTTCTCTGGAATGTCCCTCATCAAGTTAAAAATGGAGGAAATGGAGTCGCAGGTGAAGGTGTTGGAGCTAGAGAATCAGCTGGGTAATGAGCGTCTGCGTCTGGGAGAGCTCAGGAAGAAGCACTATGATATAGCAGGTGTTCCAGCAGCAGGCCTCTCAGAGGGCAATGGCCTGGCCCCTTCATCTGCCTCTGAGCCCTCCTCACCCAAACCCTCCAAGCCTAGCATCATGAGGAAACCTGCCTTGGCTCAGAAACCCAACTTACCACCTAAAAATATGTTCAGGTAGATTGATGCAGGCTAAAGAAGGACATCTCCATGCTGGATGGTCGGGTTGATCTGAGACAAACTGCCATCATATGAAGTGAACACAGGGTCCTTTTAAGCTGCCTCCAACCAGACAATCCACTTTCCCAACCCCAACCGTACCTCTGTCCCTCTTTTCTTTTGCCAAACTGGAACTTGTGCTCCTCTCTTCTTCAGCCTGATTTGATCCCTCAGTGCTTTCTGCCTCTGAAGGAGACATGCTCTATTCTTCTTTTATAGATTAAACATCATATGCCACCAAGGTGGGATTCTTTGTTTTCGTGGACATAATGGTATTAAAAACTGAAAGGGAAAATATGAGGAAATCATGCAAAACTTTTTGTTATTGCAGCAATGCCATTTTGTCTGAACTTTTTACTTATAGCCTACTGTATATTAAAAATACTAATTGTATTAGTATGGACAGGATCACTGCAACATCACAAAATGACAGCAACATATTGAACTAGCCCATATCTGGGACAGCCTCATGTTGCTgtaattttctatgttggttgGTGTGTAAGAAAGGAAGGAGACATTGGCACACAGATTATGCGGATAAGAACATATTTCCACACATTAAGTCCTGCTCAATGTCTCTGTATTAGTTCCAGGTTGTCATTCCTTCTATAGCTTGATTTATTTCTAAGTGGGACTGTGGTCCTGTGCTCAACTCTTTTCATATCACCAAATGATCATCAGTAAGACCAGGGGGTGAGAATTTTCAGGCAACCCTGTTTAGGTTAGTGTTTGATTCTAGATTTGATCAATTTAACCCCTGGTACAGGAACAGCTCCCATCATTAAAGCATGCACTAGTTTAGCTATACACATGGTCATAAGGAAGTATAattatgcatttaaaaaaatatatctatgTACAATTTAAAATTCACTCAATGGGGATTAGCAATCTGCACATCACAAATTATTCTTTGCATCTCTTCTACGTGCTCCCTAGCCACTGAATGTCTCTCTCACTGGTTATATAAAACTGGCTATGCAGTCAAAGGATGTTGGTGAAGATGCTGGTACACAAACGGAATCTCTGTACTTGACAAATAATTATCACCTTGAATTTTTAGAGGAAGGCTACTTTCCAAAGCTGAAAATGGACAGGGGgctgtacagtatacagtatgtggaACTCTTCTTTTGCTTCTGGGAGCTTTTCTTATGATTACTTCTGTGCTTTCATTTGTAATAAACACATTTATACATTCAAATCTATTAATATATTTTAGTAAAGATTACTGTGGTTCCTCCATGTAATAAGTGTATGTCAAATGAGCAATAAATGTTTATGGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1136577 lncRNA upstream 64647 58584324 ~ 58585106 (+) True G998785
TU1136578 lncRNA upstream 69566 58577945 ~ 58580187 (+) True G998786
TU1136576 lncRNA upstream 78694 58570798 ~ 58571059 (+) True G998784
TU1136336 lncRNA upstream 296973 58334736 ~ 58352780 (+) True G998570
TU1136337 lncRNA upstream 311837 58332492 ~ 58337916 (+) False G998570
TU1136659 lncRNA downstream 30713 58721071 ~ 58724224 (+) True rilpl2
TU1136699 lncRNA downstream 72533 58762891 ~ 58819490 (+) False LOC110536071
TU1136737 lncRNA downstream 130979 58821337 ~ 58821552 (+) True G998928
TU1136697 lncRNA downstream 147623 58837981 ~ 58842749 (+) True LOC110536071
TU1136691 lncRNA downstream 164852 58855210 ~ 58857759 (+) True G998885
XM_036935916.1 mRNA upstream 7849 58619847 ~ 58641904 (+) False kntc1
XM_036935915.1 mRNA upstream 7849 58620075 ~ 58641904 (+) False kntc1
XM_036935917.1 mRNA upstream 7849 58620075 ~ 58641904 (+) True kntc1
XM_021621591.2 mRNA upstream 66864 58580254 ~ 58582889 (+) True si:ch211-110p13.9
XM_036936329.1 mRNA upstream 146280 58502454 ~ 58503473 (+) True LOC110535072
XM_021621599.2 mRNA downstream 1735 58692093 ~ 58718822 (+) False LOC110536067
XM_021621598.2 mRNA downstream 1735 58692093 ~ 58720484 (+) False LOC110536067
XM_021621600.2 mRNA downstream 1735 58692093 ~ 58720484 (+) True LOC110536067
XM_021621601.2 mRNA downstream 30582 58720940 ~ 58722787 (+) False rilpl2
XM_036935919.1 mRNA downstream 72243 58762601 ~ 58851319 (+) False LOC110536071
TU1136311 other upstream 346766 58301585 ~ 58302987 (+) False G998557
TU1137372 other downstream 673543 59363901 ~ 59371176 (+) False LOC110536086
TU1137377 other downstream 673543 59363901 ~ 59371295 (+) False LOC110536086
TU1137378 other downstream 673543 59363901 ~ 59371409 (+) False LOC110536086
TU1137371 other downstream 673570 59363928 ~ 59371176 (+) False LOC110536086
TU1137373 other downstream 673570 59363928 ~ 59371409 (+) False LOC110536086

Expression Profile