RNA id: XM_021621598.2


Basic Information

Item Value
RNA id XM_021621598.2
length 2562
RNA type mRNA
GC content 0.47
exon number 8
gene id LOC110536067
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 58692093 ~ 58720484 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAATAACTTGACATGCGCAGTGGGCTACACAGAACGTTCGTAGTTCGTGATAGGTATTGGATTGCACTCTGGGGAATCTGGAAGTTGAGAATTAGGCCTACATTCAAAGAGTTGTAAAAATATCGGAAAGAATAGCTATAAGAAGTAGGCCTAGATCGTACTACAAACGTTACACAATAACTGTCCTTGTTGATTTCGGAGGGGAGAAACAGACATGGAAGACTTCGGAACACCCCTGGACAAAAACGCTACGGAGTTAACCGTTATGGACGTCTATGACATTGCCGCGGTTGTGGGACAAGAGTTTGAACGCATTATCGATCAGTTTGGGTGCGAGGCTTCACTGCGGCTAATGCCCAAAGTGGTCCGGATTCTGGAAGTTCTAGAGGTGCTGGTCACCCGAAACAATATCAACCCAGAGACGGAGGAGCTACGGCGTGAGCTGGACAGGTTGCGAATGGAACGGAATGACAGATTGAAGAAAGAGCAGCTACATCAAAAGGAGTTGGAGCTGGTGGAAGACGTGTGGAGAGGGGAGGCCCAAGACCTGCTGTCTCAGATCACACAACTGCAGGTGGAGAATAAGAGCCTTCGGAAGAGCCTGTCCCTAAAAGACTCACCTGTGACTGAGGACCTACAGAGACAGGAGGatgtgtcagagagagagtgtcaggTGATGAAGAAGCTAAAGGAGGTGGTAGACAAACAGAGGGATGAGATCCGGGATAAGGACCATGAGCTGAACCTCAAGAACGAGGACCTGGAGGCGCTTCAGCTGCAGCAGcaccatctgatgaagatcaaccTGGACCTGCGACACAGGATCAGTGTGGTAGAGGCACAGGGCAAGGCAGTGATCCAACAGAAGGCTGAGCTGGAGGCTATGTCCCAAGCGCGCCAGCAGGAGCTCGGGGCCCTGCGTCGGGAGGTGGCAAGGCTGAAGGAGGAGCGCAAAGAGTGGGAGCTGGACATGAAGAGGTCAGCCGAGGAGGAACCATCCCCCTCAAAGTCTGTGATGACAGTGCTTACACCAGTATCGGCCAAGTCCTTGGTACTAGCATCAGCAGCCTCCATCGTACACAATTCTTTTTGGGCGGAATGCAGAAGTGACCATGAATTCCTGGCACAGTGCTTTGAGTCAGAAGAGAGCCCTCCTGTCCTCTCGCTGTGTGACAAGGACCAGGAGGAGGAACCTGATGTCCTGGACCAGAAGGAGTCCGACAGGCCCCACTTCACCCTCGAGGAGCTACGGGACGTCCTGAAGGAGAGGAACGAACTCAAAGCTCAAGTGTTCATGCTGAGAGAGGAGCTCATCTATTACAAAAGTGAGGAGTTGGAGAATGAGATATACGGTATCAACTTGGATCCATCACTTCAGTCACAGCCTGCAGCCACTGAACAGCCTGACTCAGGAATCAAACGTCTGATATTCACTGCAGTAATGCCGATGGTAGCAGCAGGGTTGATTGCAGACGATCCAACGTTACAGCCGATCAGACGACTTATGTCCTGTGTTTAGCATCTTCTCTGGAGAAAAGAGGCGACCAGAGGAAGTGATTTGTTATTTGCACGCAGAGCAGGCTCAGGAGGCACGGAAGCATCCATAACCAGGGACCTACACTgaatgcacaaaacattaggaacacctgctctttcatgacagactgaccaggtgaatccaattGAAatctataatcccttattgatgtcacctgttaaatccacttcaatcagtgtagatgaaggggaggagacacattaaagaaggatttttaagccttgagacaattgagacatgaattgtgtatgtgtgccattcagagggtgaattgacaagacaaaatatttatttgcCTTTTGAACGGGGTAGGGTAGTTGGTGTCAGGTGcatcagtttgagtgtgtcaagaactgcaacgctgctgggttttaccatgctcaacagtttcctgtgtgtatcaagaatggtccactgccccaaagaacatccagacaactttacaactgtgggaagcactggagtcaacatgggcaaaATCCCTGTGAATGCTTGACACCCTGCAGTCCATTGAAGTTATTCAGAGGGCAATaagggggtacaactcaatattaggaaggtgttcctaatgttttatacactgagtgtataatgTACCATGCTGGTGGTCTCCAAGTAAAAACATGAAGAGCTTCATGCCAAGAGGGATTGTCAGGACAAAGTTGTCTTGTGGGGACAATGGAGAGATGGATTCAGGAGAGAATAATGTGCAATCTGAGAGAGATCCTGTGCCTTTTGAATTCATTTTTAGTTGTGCAGACTATGGTGCTTTATACTAGCAATAAGTATTAGTGTAACTTCAGAGATTGCTCACATGTTTATTTTAACTATTAAAGCAAACTTATACCAAGTCTGAGGCCCCAAGTAAGAGAAAATATATTGAAGGCATTTTGACGTGATATAACTATCCGCCatatttaaattgtatttatgtGAAGATTTTATTTTGACTATGCTGCACTTGAGTTTCCTAGTGTCTGAATAAAACGCTGGCATATTGTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1136647 lncRNA upstream 9473 58675749 ~ 58682620 (+) True G998846
TU1136577 lncRNA upstream 106987 58584324 ~ 58585106 (+) True G998785
TU1136578 lncRNA upstream 111906 58577945 ~ 58580187 (+) True G998786
TU1136576 lncRNA upstream 121034 58570798 ~ 58571059 (+) True G998784
TU1136336 lncRNA upstream 339313 58334736 ~ 58352780 (+) True G998570
TU1136659 lncRNA downstream 587 58721071 ~ 58724224 (+) True rilpl2
TU1136699 lncRNA downstream 42407 58762891 ~ 58819490 (+) False LOC110536071
TU1136737 lncRNA downstream 100853 58821337 ~ 58821552 (+) True G998928
TU1136697 lncRNA downstream 117497 58837981 ~ 58842749 (+) True LOC110536071
TU1136691 lncRNA downstream 134726 58855210 ~ 58857759 (+) True G998885
XM_021621596.2 mRNA upstream 1735 58649753 ~ 58690358 (+) False hip1rb
XM_021621595.2 mRNA upstream 1735 58649754 ~ 58690358 (+) False hip1rb
XM_021621597.2 mRNA upstream 1735 58653646 ~ 58690358 (+) True hip1rb
XM_036935915.1 mRNA upstream 50189 58620075 ~ 58641904 (+) False kntc1
XM_021621601.2 mRNA downstream 456 58720940 ~ 58722787 (+) False rilpl2
XM_036935919.1 mRNA downstream 42117 58762601 ~ 58851319 (+) False LOC110536071
XM_036935920.1 mRNA downstream 42117 58762601 ~ 58851319 (+) False LOC110536071
XM_021621608.2 mRNA downstream 147510 58867994 ~ 58881986 (+) True mob1a
XM_021621604.2 mRNA downstream 163276 58883760 ~ 58889515 (+) True LOC110536072
TU1136311 other upstream 389106 58301585 ~ 58302987 (+) False G998557
TU1137372 other downstream 643417 59363901 ~ 59371176 (+) False LOC110536086
TU1137377 other downstream 643417 59363901 ~ 59371295 (+) False LOC110536086
TU1137378 other downstream 643417 59363901 ~ 59371409 (+) False LOC110536086
TU1137371 other downstream 643444 59363928 ~ 59371176 (+) False LOC110536086
TU1137373 other downstream 643444 59363928 ~ 59371409 (+) False LOC110536086

Expression Profile