RNA id: TU1136659


Basic Information

Item Value
RNA id TU1136659
length 2037
lncRNA type read_through
GC content 0.39
exon number 3
gene id rilpl2
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 58720940 ~ 58724224 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTTAGCCTACTACCGGTAACTTGAAGTGGCTACTGTAGCATGCATGGAACTAAACTTAAAGTTCACAAGTATTTTGTATGTTAAATGTCACAACGCTCGATTTGAGAAATCGGTCCCACCGTTTGAGAAAACAAACTTTTGTTGAATTCAGTGCGTCTTTGGAGTACGAGCAATGGAAGAATTGAGCGAGTCTTCACCCGCTTTGGCGTTCGAGAAGGAAGCATTTGAGCTGACGGTGGAAGATGTTTATGACATTTCATACGTGATTGGCAGAGATTTGCTGAAAATAAGTACTACAGGAGCTGAAAATGGAACGAGACAACTTGAAGAGTGAACTGGATAGAATCGTGAGAGAAAGTTCTGCCGGGCAGGAAGCGGTTTTCATTCAGACGGAAATAAGGACAACCTATGAGAACAAGGACCTAAGACATTACTAATGATAAACCAAACATTTTTATGCACATTTCTATCAATGCATTGTATTAGATCAGTTTTCAGTAATGAATGGAAATGTTTTTAACTGGAATAATTTTGCTTTTGAAACTAACCCAGTTGTCTTTTTATAGATTTAACTGTTAGTCATTAATACAAGTATGGGAAAATAACTATGCTCATTAAGGTCATATAACATGGTACAGACCAATGATTTatccagtgcattcagaaagtattcagaccccttacagccttattctaaaattgattaaattgtctctccaatctacacacaataccccataatgacaaagtggatttttagaaatgttttcaaatgtattcaaatgggatataatttacataagtatttagagactcgttactcagtactttgttgaagcacctttggcagggattgcAGCCTCGAGTCTccctgggtatgatgctacaagcttggcacacctgtatttggggagtttctcccattcttctctgcagatcctctcaagctgttaggttggatggggagtgttgctgcacagctattttgaggtctcttcagagatgttcaagtctgggctctggctgggccactcaaagatatTCAGAGACACATCCCTaagccacttctgtgttgtcttggctgtgtgcttagggtcattgtcctgttggaaggtgaaccttcaccccagtctgaggccctgagtgttctggagcagggttttatcaaggatctctgtacttagctccattcatctttccggGGGGTGTAGAAGCCACCGCGTGCCCATTTTGGCAATCCTACACAATTGTAAAAACAAAAAATTAATTGCCCCACAgtggtgtcataatacccataaagtCTAGCGGTCAAAcggggaaatggttccaattgtttttccaccattcatttttctcaTAGGGGATTATAGAAACAGTTGAAGGGTGTGTCATgaaggcttaccctggcgtgacatttTTGTTAACCATCTAAATTGCTTTCAGGCAAGGTGACTGAAATATATTTTGTGCTATTTACTGACtcaaatgctaattagcatcaaagtagacatcatgcaagactacaaatccctgcacgTCAACTCTAGTTAACGCCTTTGCTAACAGGTAGTGTACATTTTTAACTCCAGACCATTCACAGAATTAccaattttatttattattacattTAGCTAATGGTTAATCCAGAGATTTTTACTATAATTTGTCACTCATCCAtctcatggcatttgtagttcttacTGATTAGCAACTAATTAGCGTTTCATTTGTTGGGGGTAAATATTTTGATAAATCATCTTGTCTAATGAGAGATTcacatggttatcaaaatgtcacgccagggtaagccttcATGACACACAGCTCTTCTAAAATCCCCCAtgagaaaaatgaatggtggaaaatcaattggaaccatttcctggTTTGACCATTAGGcttaatgggtattatgactcatactgtggtactctatagaAATGCGTTTGTCCAGGTTAGTTTGCCACATTTATTCTATTAAACACCAATGTAAACTTTTAAATTATGagcaaaacaaaaataaactatTGAGATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1136647 lncRNA upstream 38451 58675749 ~ 58682620 (+) True G998846
TU1136577 lncRNA upstream 135965 58584324 ~ 58585106 (+) True G998785
TU1136578 lncRNA upstream 140884 58577945 ~ 58580187 (+) True G998786
TU1136576 lncRNA upstream 150012 58570798 ~ 58571059 (+) True G998784
TU1136336 lncRNA upstream 368291 58334736 ~ 58352780 (+) True G998570
TU1136699 lncRNA downstream 38667 58762891 ~ 58819490 (+) False LOC110536071
TU1136737 lncRNA downstream 97113 58821337 ~ 58821552 (+) True G998928
TU1136697 lncRNA downstream 113757 58837981 ~ 58842749 (+) True LOC110536071
TU1136691 lncRNA downstream 130986 58855210 ~ 58857759 (+) True G998885
TU1136695 lncRNA downstream 135173 58859397 ~ 58860258 (+) True G998887
XM_021621598.2 mRNA upstream 587 58692093 ~ 58720484 (+) False LOC110536067
XM_021621600.2 mRNA upstream 587 58692093 ~ 58720484 (+) True LOC110536067
XM_021621599.2 mRNA upstream 2249 58692093 ~ 58718822 (+) False LOC110536067
XM_021621596.2 mRNA upstream 30713 58649753 ~ 58690358 (+) False hip1rb
XM_021621595.2 mRNA upstream 30713 58649754 ~ 58690358 (+) False hip1rb
XM_036935919.1 mRNA downstream 38377 58762601 ~ 58851319 (+) False LOC110536071
XM_036935920.1 mRNA downstream 38377 58762601 ~ 58851319 (+) False LOC110536071
XM_021621608.2 mRNA downstream 143770 58867994 ~ 58881986 (+) True mob1a
XM_021621604.2 mRNA downstream 159536 58883760 ~ 58889515 (+) True LOC110536072
XM_036935929.1 mRNA downstream 166076 58890300 ~ 58955743 (+) False smtnb
TU1136311 other upstream 418084 58301585 ~ 58302987 (+) False G998557
TU1137372 other downstream 639677 59363901 ~ 59371176 (+) False LOC110536086
TU1137377 other downstream 639677 59363901 ~ 59371295 (+) False LOC110536086
TU1137378 other downstream 639677 59363901 ~ 59371409 (+) False LOC110536086
TU1137371 other downstream 639704 59363928 ~ 59371176 (+) False LOC110536086
TU1137373 other downstream 639704 59363928 ~ 59371409 (+) False LOC110536086

Expression Profile