RNA id: XM_036935919.1


Basic Information

Item Value
RNA id XM_036935919.1
length 5361
RNA type mRNA
GC content 0.54
exon number 25
gene id LOC110536071
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 58762601 ~ 58851319 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTGAGCTCGAGAAGGAAGCAAATTCATAGTTGTGGTTCACGTTCACAGCAAACAAGACTAGAGGCAACCCTCAGAAGCTCAGGATTGCGAGTATCTTCACCATATTGTCGCAATACTCTTGCTTCAAGTGGATTTACGGACTTCGGTTTTACCGGTGTTTGAATCCAGAGCGTCTTTTTCGCTTGAGCGTTAACTGAAGTGATGAAGGCAACTCGCGTGTGAATTACTACTGGAAACAATAACGTTTTAGTAGACTATATGGATTTTCCGTCGGTTGTCAATACTTGACCCCGCTTTTTATCGGTTTACTACCATACAGTTTGGGGCCAACGTAGTTATTTGTTCAAGGAAATGTGAGGACTTGGATGCAGCTCAAGAAAGATGATGACCCGAGGCTGTCCCTAATTCCTGTTTACATGAAGTAGTTCAACTATCAAACGTCCTCAAGACAACGGAAAGGAAACGGACTAAATTAATTGTTGGCTACATTGTAACATTTCAAGCTGGCAAGTAATGGCACTTTTTATTTTCTATGTCTGCTGAGTATCCCACAGAGGAACCAAAACGCGCTCGTGACCGAGAGGGAACGGCCAATTAACTTTGATTTTGGGCACCATCGATGAGGACGCAGCAGTGAACTGACGAGTCACACATAGAAACGCCCCAGTCCCTCCCACCAccagcccccctcccctccctctgtccctctcccctatTCCTggcccctctcccccaccccagACTCACCATGCTGATCAAGGAGTACCGGATCCCAATGCCAATGAGCGTGGACGAGTACCGCATCGCCCAGCTCTACATGATCCAGAAAAAGAGTCGGGATGAGACCTGTGGCGAAGGCAGCGGAGTGGAGATCTTGGAGAACAAGCCGTATGAGAACGGCCCAGGGGGAATCGGCCAGTACACCCACAAGGTTTACCACATCGGCATGCACATCCCCAGCTGGTTCCGCTCCATCCTGCCCAAGGCAGCGCTCCGGGTAGAGGAGGAGTCCTGGAACGCCTACCCCTACACCCGCACAAGataTACATGTCCCTTTGTTGAGAAGTTCTCCATTGACATTGAGACGTACTACAAGCCAGACACAGGAAACCAGCCAGACGTCTTCAACATGTCCCCAGCCGAGAAGAGGCTAAGGACTCTGGACCCCATCGACATTGTCAAAGATCCCATCACTCCACATGAGTACTTGCAAGAGGAGGACCCTCGGATCTACACGTCAGACAAGACCAAGAGAGGACCTCTGCAGGAGGACTGGATCGAGGAGTACAACAACAACCCGGGGAAGACGCCCATCATGTGTGCTTACAAACTGTGCAAGGTGGAATTCCGCTACTGGGGTATGCAGTCCAAGATTGAGCGCTTCATCCATGATGTAGgGCTGAGGAAGGTGATGGTGCGGGCCCACCGGCAGGCTTGGTGCTGGCAGGACGAGTGGTATGGCCTGACCATCGAGGACATCAGGCAGCTGGAGCTGGAGACCCAGTTGGCCCTGGCCCAGAAGATGGCCCATTTCAGCCAGACAGAGGAGGCTACCGAGGCCAATGGAGCTGTTTCATCCCCAGACAAGAATCAGGTCGTCAAAGATACCATCAACTCTTTAGAAGCTGAGGAGGTGGTCAGTGCAGGGGGCGGGGGAGACACTCTCCAAACAAAACGAGCAGGGCTCACAAAGCAGTGGTCCACCTCCTCCAGATCCTCCCGTTCATCCAAGAGAGGAGCGAGCCCGTCACGCCACAGCCTATCTGAATGGAGGATGCAGAGCATTGCACGAGACTCCGAGGACAGCTCAGAGGAGGAGTTCTTTGATGCTCATGAGGACTTGTCAGGTGATGAAGAGGTCTTTCCCAAGGAGATTGCCAAGTGGAACTCTAACGACCTCATGGACAAGATTGAGTCGGCTGATGCAGAAGACACCCCTGGAGAGCTATACAAGGACATGGCAGGGGACTATGAAAGGGAGGCCGGTGATGAGAGACTAGATGAGGACCTCTCCTCTCAGCAGTGTCTGCAGCCTTCTAGGATCCACGTGCTGATCCTGGTGCTACATGGAGGCAACATCCTGGACACAGGAGGAGGGGACCAGACCAGTAAGCAGGGCGATGTCAACACCATCAGCACTGCCTTTGACACAGTGATGCGCTTGCACTATCCCACCGCGCTGGGACGAATCGCCATCCGCCTGGTGCCCTGCCCTGCCATCTGTGCTGAGGCCTTCTCCCTGGTGTCCAaTCTGAGCCCGTACAGCTATGATGAGAGCTGTCTGTCAAGCAGTCAGGACCATATCCCCCTGGCTGCCCTGCCTCTCCTGGCCACCTCCACCCCCCAGTACCAGGAGGCTGTGGCCACCGTCATCATGAGAGCCAACCAGGTGTACAACGACTTCATCAGGTCCCTGGATGGGACAACCTTCTCTGGCCAGGTGTGCTTGATTGGGGACTGCGTGGGAGGGATCTTGGGGTTTGACGCCTTGTGTATCAGCAACCAGACTATTGGTGAGAGCCAGAACAGCAGCCGCAGGGGAAGTGTAATCAGCGTACAGGACCAggacctcctctctccagggatCATCATCAACAGTGGGTATGGCTCTGCCTCTCCCACCCTGGAGAGCAGCCGCCACCTGAGCCGCAGCAACATTGACATCCCCCGCTCAGGAGGACCAGATGACCCCAAGAGACAGCTGCCCCGCAAGACGAGCGACTCCTCCACATATGAGTTGGACACCATCAAACACCACCAGGCCTTCCTGACTAGCCTCCACTCCAGTGTTCTGCGGACCGACCCGTCCTCACGCAGGTCCAGCAGCAGCACCTTTCAGGATGCAGGCTCTCTGGGGAAGTTTGAATTTGAGGTGGCAGACTTCTTCCTCTTTGGCTCTCCTCTGGGCCTTGTCCTCGCCCTGAGGAAGACTGTCATTCCTGTGCTGGACGTGGCCCAGCTGCGCCCTGCCTGCCAGCAGGTCTACAACCTGTTCCACCCAGCCGACCCCTTGGCCTCACGCCTGGAGCCCCTCCTGGAGAAGAAGTTCCACCTCCTGCCCCCTTTCAATGTTCCCCGCTACACACGCTTCCCCCTGGGGGACGGCAACTCCGCTCTACTGGTGGAGACAGTCCAGAGCAACCCTCAGCTCCTGCTCGATACTGGGCCCCCCCTCTCTTTCCGCTGTCAGGAGCCCATCAGCGAGACCTGCATCCCTGTGCCGGTGCTAAACTGGCAGGAGGGCTCCCTCAAGGCCACACCTGCTGTTCTGGAGTCGGATTTTGTTCAGTCTCATGGTGGTGTCTTCATGGACAGTTCGTACCCCTCCTCCCCCGTTACGGGCCCCCACTGCCGGGGCCTGCGGAGGGCCAGTGAGGTCAGCATTGCCAGCCAGGTCTCAGGAATGGCAGACAGTTACACTGCCACCAACATAGCCAACATCGCAGCTCGTTGGTGGGGCACCAAGCGTGTGGACTTTGCCTTGTACTGCCCTGATGCCCTGACAGCCTTCCCCACAGTGGCACTACCGCACCTCTTCCATGCATCCTACTGGGAGTCCACTGATGTAGTGTCCTTCCTGCTGCGACAGGTTATGAGACATGAAAACTCCAGCATACTGGAGCTGGATGGTAAGGAGGTGTCAGAGTTCACTCCATCTAAACCCCGGGAGAAGTGGCTCAGGAAGAGAACCCACGTCAAGATCAGGAATGTGACAGCCAATCATCGTGTAAACGATGCAGTGTTCACAGAAGGTGGGCTGCAGATCGTGACTGGCCGCTTCATGTACGGACCTCTGGACATGGTCACACTGACTGGGGAGAAGGTGGACATCCACATCATGACCCAGCCCCCGTCTGGAGACTGGGTGTACTTTGACACAGAGCTGACCAACAGCGGTGGCCGTGTGTCCTTCATCATCCCAGAGAGCAAACGGCTGGGGGTTGGCGTCTATCCGGTCAAACTAGTGGTCAGGGGGGATCACACATTTGCAGACAGCTACCTGACAGTGCTTCCCCATGGGACAGAGTTTGTTGTGTTCAGTATAGACGGCTCATTCGCTGCCAGCGTGTCCATCATGGGGAGCGATCCCAAAGTTCGAGCCGGAGCAGTCGATGTGGTCAGGCACTGGCAGGACCTGGGCTATTTGATCGTCTATGTGACGGGGCGTCCAGACATGCAGAAGCAGAGAGTGGTGGCCTGGCTGTCTCAGCATAACTTCCCCCATGGCATCGTCTCCTTCTGTGATGGCCTGGTCCACGACCCACTCAGACACAAAGCCAACTTCCTCAAGTCACTCATGGAGGCTCACATGAAGATCTTTGCTTGTTACGGTTCTACCAAAGACATCGCAGTCTACACCTCCAtcggcctctctccctcccagatcTACATCATTGGCCGATCCTCCAAGAAGATGCAAGCTCAGTGCCAGTTCATTACAGAGGGCTATGCGACCCACCTCTCTCAGCTGGAGTACAACCAGCGCTCTCGGCCAGCAAAGACTAGCAGTGCCCGCATGATCCTACGGAAGGGCAGCTTTGGTCTGGGTGCAAAAAGCGACTTCCTACGGAAGCGGAACCGCCTGCTGCGCACCATCTCCGCCCAGCCGGCCTCCAGCTTGCCCAGCGGCAGTGGCCACAGTAGACCAGAGCGCACACagagccagtcagacagccaCAGCCAGCATGGCCCTGGACCAGCCCAGCGCAGCATGAGCATTACAGCAGGCTGCTGGGGCCGCAGTGGCAGCACCAAGCTGGAGCCTTGGGTGTTCAACCCAAAGTAGGAGGATGAAATTGAGCAAGGACAAAGGTGATGAGGAAAGGGAAAAACtgcagaaagtgaaatttaagaAATTAAGATTGAGATGACCAGAGAATAATTTAAAGACAGGGGAGAGTGAGATGCTGGTCGTAGGCTTTCAAAGCTCTAAATACAGAGACAGGAAGAAGAATGAGAGAATACATGTGGTAAACAGGTCAATGGAAGTTGGGGAAAGCGCAAGCTGATCGAACAAAGTGGAAATTCGGCAAATCCATCAGGATTGATGTATTCtaacaggcccacaatgtggttactaaaatccgatttggatatatttggctgttttcgCTGCATAATATATAAATATCTGATAAATGCTAACTCTGGTTCAAATATATGGTAGTAAAGCTAGCCATATGGAAATCGTTGGTGGTAATTGAAGCCGTTTTTTAAGTGTAATGCTTGGTGACGATGacataaaaatgtattggggttgacatccatagAAGCATTATACTccaaattataaactgggtggtttgagccctgaatgctgattggctaacaaACTTggtatatttaacctttatttaact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1136659 lncRNA upstream 38377 58721071 ~ 58724224 (+) True rilpl2
TU1136647 lncRNA upstream 79981 58675749 ~ 58682620 (+) True G998846
TU1136577 lncRNA upstream 177495 58584324 ~ 58585106 (+) True G998785
TU1136578 lncRNA upstream 182414 58577945 ~ 58580187 (+) True G998786
TU1136576 lncRNA upstream 191542 58570798 ~ 58571059 (+) True G998784
TU1136691 lncRNA downstream 3891 58855210 ~ 58857759 (+) True G998885
TU1136695 lncRNA downstream 8078 58859397 ~ 58860258 (+) True G998887
TU1136694 lncRNA downstream 9310 58860629 ~ 58862743 (+) True G998886
TU1136767 lncRNA downstream 43762 58895081 ~ 58895382 (+) True G998957
TU1136781 lncRNA downstream 65136 58916455 ~ 58916674 (+) True G998970
XM_021621601.2 mRNA upstream 39814 58720940 ~ 58722787 (+) False rilpl2
XM_021621598.2 mRNA upstream 42117 58692093 ~ 58720484 (+) False LOC110536067
XM_021621600.2 mRNA upstream 42117 58692093 ~ 58720484 (+) True LOC110536067
XM_021621599.2 mRNA upstream 43779 58692093 ~ 58718822 (+) False LOC110536067
XM_021621595.2 mRNA upstream 72243 58649754 ~ 58690358 (+) False hip1rb
XM_021621608.2 mRNA downstream 16675 58867994 ~ 58881986 (+) True mob1a
XM_021621604.2 mRNA downstream 32441 58883760 ~ 58889515 (+) True LOC110536072
XM_036935929.1 mRNA downstream 38981 58890300 ~ 58955743 (+) False smtnb
XM_036935928.1 mRNA downstream 38982 58890301 ~ 58951234 (+) False smtnb
XM_036935922.1 mRNA downstream 38982 58890301 ~ 58955743 (+) False smtnb
TU1136311 other upstream 459614 58301585 ~ 58302987 (+) False G998557
TU1137372 other downstream 512582 59363901 ~ 59371176 (+) False LOC110536086
TU1137377 other downstream 512582 59363901 ~ 59371295 (+) False LOC110536086
TU1137378 other downstream 512582 59363901 ~ 59371409 (+) False LOC110536086
TU1137371 other downstream 512609 59363928 ~ 59371176 (+) False LOC110536086
TU1137373 other downstream 512609 59363928 ~ 59371409 (+) False LOC110536086

Expression Profile