RNA id: XM_021621604.2


Basic Information

Item Value
RNA id XM_021621604.2
length 2705
RNA type mRNA
GC content 0.48
exon number 12
gene id LOC110536072
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 58883760 ~ 58889515 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTGGTGGTCTCATTGGTCAACAGTATTTCGATTAGCGAATCAGATACTAGATACTTGTGCGTCACTTGGTAGCTGCTTTCAGGAAACGCTTGCTAACATGATTTGCATTAACTATCTTGGAAATCAGAAAGCTAGCTAGGGTGAAACTAAAACAAAGTAAGCAGCACAAGGGCTTTCTTGTCTCTCGAAGTTTATTCTGACATTAGCTATTGAAAACAGAGATTTAAAGCCTAATCTTTAGCTAGCTACTAGCCAACTAACGCCTAGCTACCAGCGAAGTAAACAAGGGACCAAGTCACGGCAGCAGGAGCCATGGCAAATGAAAGCACACAGTTTTGTGCCAATTGtcAGCATGACATTCCAGAGGCTAATTTCACTACTCATGAGAGTCACTGTCGCCGGAATATTGCTCTGTGTGATGTATGCCAAGAGCCAGTGCCCCGTTCAGATCTGCAGCAGCACAAGGAACAGGAGCACATGCAGGTGAAATGTAAGTGCGGTTTAAAGATTGAGAAAAGCCTCATGGAATCTCACCAGAGATCTGAGTGCAATCAGCGGATGGTGCCGTGTCAGTACTGTGAACTGGAGCTGGTTTTCAGTCAGTCCAAGGAGCATGAGGATTATTGTGGGACGCGCACAGAGCCCTGTCAATTCTGCAAGTGCAATGTAATGTTGAGGGAGCAAGCTGTCCATCCAGCCTTGTGTGGTAGCCTCACACCACCTCAAGAGAGAAACAACAGCCGGGCAACTCTCAGCCCAGCAGAGACCCagtctccaggaacatggtttgAATCTCATTCCATCCGTAACCTGCTGAGGGCCCAGGAGGGAGAAGGCCACAAGAACAACAACGCCAGTGCGTCTGACCGCAGGGCCCTACCGCGGCCACTGGAGTCCAGAGTGCACAACAGCACCCGGGGGCAAGTGGGCCAGGGAGGAAGGGGGAACATTGCCCCTAGGAATACAGACTTCAGCCACTTGCTGGAACAGGAAGCTGCAGTGCTGGGCAACAACAATAACAGCATGGCATCATTTGCATGGCCTGCAGACAAACCACTGGGAGAAGACTCTGCCAGCCTGGACTACCTTTTGGCCCTTAGCCTGCAGAGTGATGGAGACACAGGGGATGTAGGGGGAGGAGCGGGGGCattgtggacagatgtctgggACCACAAATTTGGAAGGATGTCCAGCAGCGGCTCTCTTATCTCTCCCCCTAATAACAACCACCAACATGTCACCACTGGCACCAATACAGCACCAGAACATGACCAGACAGACACCATgttgccctgtgagttctgtgaGAAGCTGTTTCCTGAAGAGGACCTCATTTTACACCAGACTGGCTGTAGTCCTGCCTCAGCCTTTGCATCTTTCAGCAAGCGACCTCCATCTCCATGCTACGATGGCAGGATTGCTAGGGGTGCTGGTGGTCTTCTGCACATCCCACCTGACACCCCTAGCTTCCCCCGTTCAGTCTCCCAGCTTTCCTACAGTCCACCTGCCAGTCCACTACAGAGAGACGTGGTCATTCCCTGTGAGTTCTGTGGAGTAGCCCTGGAGGAGGCCGTTGTCTTTCACCACCAGGATAAATGTGACCTCCGACCTCGCACGGCTCCCTTAGTGGATAAGGTCAACAAAGTGTCCTTTCAAAAACCATCTCTTCCTCTCAAAGAGAGCCGTGGATGGAGCTCCTCTGAGGTGCAGAGGAGACTCAAGCACCAATTGGTCCCCTTGGATGGGCTGGACAGAGAGAAGCCCCAGGTGCAAAGCCCAAATGAATGGCAGAGAGTCCACAGTGTGCTACCCATTCCAGGGAAGATCTCAAACTGTGATCCTCAGGTGAAGAACAGGCCCCAGCATGGGAATGAGGCAGAGGGGGGCCACTTGCTATTCAGTGAAGGCCACAAATCCAACTCTGCAGCAGCTGTGGGACCTCCCCTAAGAGAAAACAATGAGGGACCAAGGATTAAAGGACCAAGGAATGCAGGGCCATCAAAGGTGCCTAAGAAGCAAAACAAAGAACAGGAAGATGAGTGAGGGCAAGACTGTCGATGGAAAGAGCTGCAGACAATCACCAAGTGCTTTTTCTGTGTGCGGTAGTCTGTCACTCTAACAGTGGTGGCGTTACTGGCTGGCTACATTGCCGATGCCTGCCAGATCTCACTACACTTGGGAAGGTGTTTAACATATCAGCAAACCACAAATTGTATAACAATCTGATGCCAGATTGTGCATCAGAAGTTGTGGCGCAAACCAGTGGTTGATGCAATGCAATGTAGTCCTCTTGGAACATGACCAGAGTCTCTttattccctgtgtgtgtgtttctgtatgtttcAGTTGCTCTTTCTTTTTAAAGTCTAAAGAGTGAAACTGAAATATTTGAATGATTCCAATAGTTTGTAATATAACTTTCAGCTTTTTGTAATCTTTTAAACGTTTAATATAAATTGTATAGAATTTAGGAAACCCACCTTAATATACTCTTGAAAAACCTATGTAAAAATGTGTACAGGTATGTAAGAAATCTTAAAGCTCCACAAAGAAATTGTACTCTTCACTGAATAATGCAAAATCAATGACACATACAGTATCAAAGCATTATTTGTATTTCGGGCTGCACCTATTGAACTGTTTGTTTTTTGTATGCTTTGTGATATTATCTTCATACTTTTAATAAATCCTTAGTATCAATGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1136694 lncRNA upstream 21017 58860629 ~ 58862743 (+) True G998886
TU1136695 lncRNA upstream 23502 58859397 ~ 58860258 (+) True G998887
TU1136691 lncRNA upstream 26001 58855210 ~ 58857759 (+) True G998885
TU1136697 lncRNA upstream 41011 58837981 ~ 58842749 (+) True LOC110536071
TU1136737 lncRNA upstream 62208 58821337 ~ 58821552 (+) True G998928
TU1136767 lncRNA downstream 5566 58895081 ~ 58895382 (+) True G998957
TU1136781 lncRNA downstream 26940 58916455 ~ 58916674 (+) True G998970
TU1136759 lncRNA downstream 115953 59005468 ~ 59006695 (+) True G998949
TU1137164 lncRNA downstream 135878 59025393 ~ 59025692 (+) True G999301
TU1137168 lncRNA downstream 141026 59030541 ~ 59030873 (+) True G999305
XM_021621608.2 mRNA upstream 1774 58867994 ~ 58881986 (+) True mob1a
XM_036935919.1 mRNA upstream 32441 58762601 ~ 58851319 (+) False LOC110536071
XM_036935920.1 mRNA upstream 32441 58762601 ~ 58851319 (+) False LOC110536071
XM_021621601.2 mRNA upstream 160973 58720940 ~ 58722787 (+) False rilpl2
XM_021621598.2 mRNA upstream 163276 58692093 ~ 58720484 (+) False LOC110536067
XM_036935929.1 mRNA downstream 785 58890300 ~ 58955743 (+) False smtnb
XM_036935928.1 mRNA downstream 786 58890301 ~ 58951234 (+) False smtnb
XM_036935922.1 mRNA downstream 786 58890301 ~ 58955743 (+) False smtnb
XM_036935923.1 mRNA downstream 787 58890302 ~ 58955743 (+) False smtnb
XM_036935924.1 mRNA downstream 787 58890302 ~ 58955743 (+) False smtnb
TU1136311 other upstream 580773 58301585 ~ 58302987 (+) False G998557
TU1137372 other downstream 474386 59363901 ~ 59371176 (+) False LOC110536086
TU1137377 other downstream 474386 59363901 ~ 59371295 (+) False LOC110536086
TU1137378 other downstream 474386 59363901 ~ 59371409 (+) False LOC110536086
TU1137371 other downstream 474413 59363928 ~ 59371176 (+) False LOC110536086
TU1137373 other downstream 474413 59363928 ~ 59371409 (+) False LOC110536086

Expression Profile