RNA id: XM_036935923.1


Basic Information

Item Value
RNA id XM_036935923.1
length 6532
RNA type mRNA
GC content 0.50
exon number 20
gene id smtnb
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 58890300 ~ 58955743 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGATTCAAAGCTCGCGCTTTCTGTTTCAAACTCCGGTTCTCATATTCTAAAGGTTTTaggagagagaagtaataaaaggCAGAGTTTAAAAAGTATATGTTTTTCCATCTCTAGAGCACTCCAGTCGTTTCTTATTAAcgtaatccaaaagttattttgtggCAGGAATTTGCATTGTGATAAGACAAGTTCTATGTAAAGTTGCTTGGAAGAAACCGTAAATATTCGAGCAGGTGGAGCATCAATTCCGACAAGTGAAAGGGGGACTTGTCTTTTGGGACACAATTGTTGCCAGCATTTGTATCCCGCTGGTCTGCTTTATTAAACGCATAGGGTCCCCACGTTTAACGCGCGTGGTTCTTTGTTTGAAGGACGTTTCCAAATCAAAAGCCGGCTTTTTCTTGCTTTTTGAGTAAACATTTTACCTGTCATTGTGACGTTACCCTAAATACTGAAAATGTCAGCTGAAAGATATTCAAAATTGGATGAACCGTCGCTTCGGAACCTGctggatGGGACGATGGATCTGGATAAGAGACGGCTGATCCGTTCAGCCATCAGAGagctgaggaggagggagatggaggacatGGAGGCAGCCCTGGCCAGAAAACGCTTCCGACCAACAAATCTCAGCCAGAACGACAACAAAGAGAACCAACTCACACATAGGTCAGAATTGGGGGGCTCCCTAGACGTGCTCTCTGTGAAACTACAAGCCATCCAGGACATTGAGGAGCTGACTGGACTGctgCACGGTGCCAATGAGTATGAGGAGAGGAAACTGATCAGAGCTGCCATCCGCCGCCTCCGAGACGAGGAGCAGCAGGGTACATGGGAGAAAGGGAGGACCACCGGCCGATGTCTGGAGTCTGAGGGCCTGGAGCTCCAAAGCAGCCTGGGAACAGGAgacacagagaaggagaggctTAGCGAGCGAAAGAGAATCAAGTCTCAGATCCGGGAGCTACGGAGCCACCAGACGCAGCAGGGCAGAGAGCTGCACAGGACAGACTCCAACTCAGGCATGGTTCTGGTTCTGGACCCCCTGGTGAGGGATGAGGTCCCGGGCCCTCTGCTGACCCGCCCACCGACCCGGGACCCTGTGACATCATCAGAGCCGGACGTGGTCCTATCCCACCGCCAGCGTTCTGACTCGACATCCTCAGAACGCAGCCTGGCCTCCAGGCCCCGTCTGGACTCTGGAGCCTCAGAGAAGAGTCTGGGTCTGGGCTCAGCCTTTCGGACCAGGGTGGACTCTGGAGCATCAGAAAAGAGCCTGGGCTCAGCCTTCAGGACCAGGGTGGACTCTGGAGCATCAGAAAAGAGCCTGGGCTCAGCCTTCCGGACCAGGGTGGACTCTGGAGCATCAGAAAAGAGCCTGGGCTCAGCCTTCAGGACCAGGGTGGACTCTGGAGCATCAGAAAAGAGCCTGGGCTCAGCCTTCAGGACCAGGGTGGACTCTGGAGCATCAGAAAAGAGCCTGGGCTCAGCCTTCAGGACCAGGGTGGGCTCTGGAGCATCAGAAAAGAGCCTGGGCTCAGCCTTCAGGACCAGGGTGGACTCAGGAGCATCAGACAGAAGCCAGTGTTCCGCCCACAGAGGCAGACTGGACTCTGGGGCCTCAGAGTCCCACTTcagacagagactggactctggcACATCAGACTCCAGTATGGGACCGCCAGCCCCCCTGGGCTCTGAGACCTCCGACGGCGCAGGGCTCCTGTCACGGAAACGGTTGGACTCAGGGACGTCTGACCTGAGTGTGGGCGTGTTGTCTGTGGGCCGGAGCCGAGTAGAGCAGCCAGAGGTGACCATGAGTAGCTCCTCCTACAACACAGACTCTGAGGCTGAAAGCACCAACCACCATCCAGACCAGCCCCATCAGGACAGCACCACTACCAACCATTATCAGCCTGATGGGGCCGTCCTATTCAGGAAAGCCCCAGACTCCCACAGTGGCCTGCTCAATGGCAGTGCCAAGGAAAGAGGAGACATCCAGGAACAGAAGGTCAGATATACTTTACTCACTCCTCTCAGAAAATCAAATGATGCAGTTCCTGAGAAGAAAGAGCCGGTTGTCTTGGCCCCGTTCGGCCGGGCTAACTCTGTGCGGGACTGTATGCGTAAGTTCACGGAGCCCAGTCCCAGTGTCCCGGTCCTGAAGAGGGGCTCTCAGTCTCTGAGGAACGCGACAGCCCCCAGTGCCCGAGTCCTAGGCAGAGCCACCCAGCTGAGTGAGGGGCCAGCAGCAGGGACAGCCAAGCAGACAGCAGTGACCACAGTAGTATCCATCACCACCCCTACAGACAGACCCGGGAGACCCCATGTAGGCTCTACATCCTACTCTTCATCCGCCTCCTCCTCAAATAACCATGTCCAATGCCAGGGCACAGTTCATCCAGGGGGCGTGGCCACCAAACCTCTGCAAAGCGCTGCTCAATCCTTGAACGCTGTAGGCGGGGCAAAGCAGGCGGCTGAAAAGCTGCGGCACGCCTCAGGCGGCTCAAAGGAAGACAAGACCCCAGGGAGAGCATCTGCACAGCGGGACAGCAAGGGAGCGGCAGACCCCGACATGAAGACCTTCCTAACTATCGAGATCAAAGATGGgcgcaccaccaccacctcttcaTCCTCTAGAGGCAACCTGGCCCCACGCATCTCCACCAACCCCATAGAGTTGACCCTGGGCCTCAGAGCGACCCCCTTCAAGATGTCCTCCTCCAGCCTTACCTACGGATCCTCTTTCAAGATGGCCTCAGAGCCCGTGTTGGCAGTGGAGCCCTCAGTGCGGGTGGCCTGCTGTCAGCCCCCGGCTGCTGTACCCAACGGCTCCTATGCGCCACCTCGGGACAAATTTGAAGAGTGCTCCAGAAAACTGACCGCAGAACAGCTGGCCGCCATCGACAATGAGGAGCTCCTGGATAAAATGCTGGATGAGTCCAAGGACTTTGAGGAGAGGAAGATGATCCGACAGGCCATGAGAGATCTGCGTAAGAGGAAGAGAGAGGCCGAACTGGGATGTACTCAAGAGGAAATAGACCAGAGAGAAAAGGAGCGGGAGTTTCGTCTTGCGGAGCTTCGGCAGCAGAGAGCGGAGCATACTCAGAAGGGTCGTACGggaggaggagctggagaggTGGTCATGAGGAAGGTGGAGATGTCAGCTGATGGCTCCACCCTCAGCCAAGTCACCAAGACAGACCGCTTTGCCCAGTCTGGTGATGGCAGCAGGACAGCTCACAGCACCATCATGGAGGCCAGTTATGTGAAGAAAACAGACGTGGGGACAGTTCAGTCCAAGTCCTACAGCtgctcctcctctacctccagcaGCAGCTCCACCAGGAAAGTGGGCAGTGTGTTTGACCGCGAGGACGACTCGGTGTCCCGTGCTGCAGAGCGCCGGCAGGCAGAGAAGCGCAAGGAGCTGATGAGAGCCCAGACTCTGCCCAAGATGTCCGCCGCACAGTCCCGCAAAGCCATGATCGAGAAACTGGACAAGGAGAGCGGAGGGCCAGGAAATAAAGCAGTTGCCAAGGTGAACACAGTCCAGCGCTCAGCTAGCTGCATGGTGCCCAATGCCAACTCCATCAAACAGATGCTCCTGGACTGGTGCCGCGCCAAGACCCGCTCATACCAGAATGTGGACATCCAGAACTTCTCGTCCAGTTGGAGTGATGGCATGGCGTTCTGTGCCCTGGTCCATAACTTCTTCCCAGAGGCCTTTGACTACTCCTCTCTCAACCCTGCCAACCGCAGACACAACTTTGAGGTGGCCTTCAGCACTGCAGAGGAATGTGCCAACTGTATGCCCCTGTTGGAGGTAGAGGACATGATGATCATGGGGAGGAAGCCTGACTCCAAGTGTGTGTTCACCTATGTGCAGTCACTGGTCAATCACCTGCGCAGGCATGAGATGAAACTCGCCAAACTCCAGGGCACCAACCTCTGATCTGCTCACTGTGTATCTTCCCCCATCACACCCCTCTCCTGAGCCCTGGTCCTGAACACCATCCATGTCCCAAAAGACAGCAGCCCTGACTCTGAGTGAGGGGTGTTACTGATTTGCACATCTCTGATGGCCAACAGGGTGGGGAGTGTGTAGGTGTTGGCATCCGTCTTATGATTAtctttgttgatggtggtggcatGCCAGACAGATAAATTCCCTTCCTCTGAACATATTTGTTTAGGCTGTGCGAACCTTCCCGTCTTAATAGAGCATCTTTAAGCTTTAATTTATATTTTATACTGATATTTAGTTGTACAGCCTATCAGTCATAAGGCAGTTCTATACATGGTTTGGAAGTCTGAAGATTTAGCACCAACAAAACCCTACATTAAATGTACATGAGATAGGAATTTTACTGTATTCCCTCACCCACATTAATGCctacatttttttgttttctgtGACAATTGCAAAATGTTACTCAAGCTGTTGACGaggatgaagaaaaaaaatatgataTGAGGCATTGTTAATATTCCTTCAGTCCCCACTCTGGTACTGTTAAAGGTGTTACCAAATCTGCTAAACACATCTATTTGAATTGTTTTAAATAGTGCTTGGTATGGAGGGATGTTAATTAttatttggtgggtgcttatatttatCCTATTACACACACGTACAAGTATTTATTAATACGCATGTGTGAATTAGATTATTTTTTGCATATcacaactctccctgagacatcCTCATGAAAGTGGGATCACGGCCAGGGTCTGGACCCTGGACCAATTAGgattaaatgccttgctcaaaggatcagacagatttttcaccttgttggctcgAGGATTTGAACTaccgacctttcggttacaagcccaacactctaacccagggatgggcaactctaGTCCTCAGGGGCCGGAGTGGTgtcactttttctccatccctatcAAACACAGCTCATTAAACTAACTGTATTCTgtactgaagatcatgattagttgattattggagtcaggtgtgtttgcTGAAGCAAAAGTGTGAAACCAATCAGGCTCCCAAGGAATGGAGTTGTCCATCCTTACGCTAACCACTAAGCTAGCTGCTGCCCGATGTTATTCTGTAGCTGGCATTATGAAATTGGCGGATCCGTCTATGCAGCACTAACGTAGCAGGTGTAAAGAAACGCATGAGAAGGTTCTACAGAAACCAGAAGCATCTGGTTCAGGCTTTGTCTCTTCTCTGCTTTTCCCCTGAAAACGGTATGCTTCCAGGTTCTGCCGACCAACTGAAGGTGATGCAAAACCGATATCTGAATCTACAGACTCACTGAGGTTGAAGCCAGACTAGGTTGTGATAGTAGTTGTGAAACTATAATTGTGTATTTACACCACTCAGAATATTTACATAATGTTGGTCTGTGGAGAAACACCAGTGTTGAAAAGTAGGTTCCAAGTTCCTCTCAGACAGGTAAAATCACACATTGGTGTTTCTAGATTATCACACCTTTTCTCCTTGTCCTTGCCGCTGTTCGCTACATTGGGATCTAAAAAAAATCTTGGCATGGGGTTGTCACATTCACACTGCCAGCATCAGCCCACCCagcaaacacatagaaacacacagctCTTTAATTATGCTTGGGTAACATTTTTGTTGGTGGTCATACCATATGCTTTGAAGTTTTGTTTCATGAGTCCATCTATGAAAATGTTTGTACAGGCTATAGgttatggtaatgtcagtatttgtgggctcccgagtggcgcaaggcactgcttctcagctctagaggtgtcactacagaccctgattcgattccgggctgtatcacaaccagccgtgattgggagtcccataaggcagcgcacaattggcccagcgtcgtccgggtttagtcgtcattataaataagaatttgttcttaactgacttgcctggttaaataaacatTTGAATATGAAAAGGTTTGTTAGAGGCCAaccatcaaatgtatttataaagcccttcttacatcaactgatgtacagaaacccagcctaaaaccccaaacagcaagcaatgcaggtgtagaagcacggtggctaggaaaaactccctggaaaggccggaacctagagGAACCAGCCAACTTCCCTTCTCTAAATTCTTGGGCCCAATGAAAGCTGGCTTTCAGCTCAGTTGATTATGACAGACAGGAGAATATTAATGATAAAGGCTGAATGTACTTTATTGCCCATGTATATTTTCTGAATTCTAGCTAAATAAAAATGTTATGGTGTCTTTATGGTTTTAGAACTGGTTTTGATTTATTTCACTAATTGAGACTAGAGAAATGTACTAAATCTAAATTGTCACGTTTCGTAAACAGGTGTCgactaacaatgaaatgcttacttatgggtccttttccaacaatgcagagtttagaAAATATGGTTACGACAATTTAATATTCCGCAACCAGAAAGTTTCCACAAACTAGTTCATCCTGTACATACATGCTTGGACACAGTCAATTCAATGTTTCTGTACACCACAATGAATGTGAATTAACAATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1136694 lncRNA upstream 27559 58860629 ~ 58862743 (+) True G998886
TU1136695 lncRNA upstream 30044 58859397 ~ 58860258 (+) True G998887
TU1136691 lncRNA upstream 32543 58855210 ~ 58857759 (+) True G998885
TU1136697 lncRNA upstream 47553 58837981 ~ 58842749 (+) True LOC110536071
TU1136737 lncRNA upstream 68750 58821337 ~ 58821552 (+) True G998928
TU1136759 lncRNA downstream 49725 59005468 ~ 59006695 (+) True G998949
TU1137164 lncRNA downstream 69650 59025393 ~ 59025692 (+) True G999301
TU1137168 lncRNA downstream 74798 59030541 ~ 59030873 (+) True G999305
TU1137177 lncRNA downstream 87355 59043098 ~ 59043417 (+) True G999313
TU1137181 lncRNA downstream 104636 59060379 ~ 59060632 (+) True G999316
XM_021621604.2 mRNA upstream 787 58883760 ~ 58889515 (+) True LOC110536072
XM_021621608.2 mRNA upstream 8316 58867994 ~ 58881986 (+) True mob1a
XM_036935919.1 mRNA upstream 38983 58762601 ~ 58851319 (+) False LOC110536071
XM_036935920.1 mRNA upstream 38983 58762601 ~ 58851319 (+) False LOC110536071
XM_021621601.2 mRNA upstream 167515 58720940 ~ 58722787 (+) False rilpl2
XM_036935930.1 mRNA downstream 1164 58956907 ~ 59002382 (+) False LOC110536079
XM_021621619.2 mRNA downstream 12749 58968492 ~ 59002382 (+) True LOC110536079
XM_021621622.2 mRNA downstream 62509 59018252 ~ 59024137 (+) False LOC110536081
XM_036935932.1 mRNA downstream 63154 59018897 ~ 59024137 (+) True LOC110536081
XM_021621623.2 mRNA downstream 91934 59047677 ~ 59052881 (+) False LOC110536082
TU1136311 other upstream 587315 58301585 ~ 58302987 (+) False G998557
TU1137372 other downstream 408158 59363901 ~ 59371176 (+) False LOC110536086
TU1137377 other downstream 408158 59363901 ~ 59371295 (+) False LOC110536086
TU1137378 other downstream 408158 59363901 ~ 59371409 (+) False LOC110536086
TU1137371 other downstream 408185 59363928 ~ 59371176 (+) False LOC110536086
TU1137373 other downstream 408185 59363928 ~ 59371409 (+) False LOC110536086

Expression Profile