RNA id: XM_021621628.2


Basic Information

Item Value
RNA id XM_021621628.2
length 3406
RNA type mRNA
GC content 0.46
exon number 16
gene id LOC110536084
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 59082752 ~ 59120896 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTACGGGATCCAGGAGCATCTCATAAGAGACGTCAGCGGATTAAAAGAAAGAACTCTGGGAGAGGAGATGGATCCGGTCCGGTCCTGGGTGCGTAATGTCGGTGTTGTCGATGCTAACGTAGCGGCGCAAAGtgGTGTAGCTCTCTCCAGGGCCCACTTTGAGAAGCAGCCCCCCTCTAACCTGCGCAAGTCCAACTTCTTCCACTTCGTCCTGGCACTCTATGACAGACACGGACAGCCTGTAGAGGTGGAGAGGACTTCCTTCGTGGACTTTGTGGAGCAcgacaagACGGGAGAAAAAACCAACAACGGCACGCACTACAAGCTGCAGCTCCTCTACAGCAATGGGGTTCGTACAGAACAGGATCTTTATGCACGACTTATTGACTCCGTCACTAAACAGcccatATCATATGAGGGACAGAACAAGAATCCTGAAATGTGCCGGGTTTTGCTCACTCACGAGGTTATGTGCAGTCGCTGTTGTGAGAAGAAAAGCTGTGGAAACCGCAACGAGACGCCCTCTGACCCGGTCATCATTGACAGGTTCTTTTTGAAGTTTTTCTTGAAGTGTAACCAGAATTGTCTGAAGACAGCAGGAAACCCAAGGGACATGAGAAGATTTCAGGTGGTCCTGTCCAGCACTGTCAGTGTAGACGGccatgtcttagccgtgtctgacaACATGTTTGTCCACAATAACTCCAAACATGGCCGAAGAGCTCGCAGGCTAGAGCCTGGAGAGTCAGTGGAGAACGGTATGGAGTATGCCACCCCATGTATCAAAGCCATCAGCCCCAGTGAGGGCTGGACCACAGGCGGGGCCATGGTCATCGTGATCGGGGAGAACTTCTTTGACGGGCTGCAGGTGGTGTTCGGCAGCATGCTGGTGTGGAGCGAGttgaTCACGCCCCACGCCATCCGTGTCCAGACGCCCCCACGCCACATCCCAGGGGTCGTGGAGGTCACGCTGTCCTACAAATCTAAACAATTCTGCAAGGGGGCACCTGGACGCTTTATCtatacagCGCTGAATGAGCCCACCATAGACTACGGTTTCCAGAGGCTTCAAAAGGTCATTCCCAGACACCCTGGTGACCCTGACAAACTAGCTAAGgagATGCTACTGAAGAGAGCAGCTGATCTGGTAGAAGCCTTGTATGGAAACCCACACAGTAATCAGGACATGTTGCTGAAGCGTGCAGCGGACATCGCTGAGGCCCTGTACAGTGTTCCCCGTCCCCACAGCCAGCTGCAGGCCCTGCCCAGCTCCCCAGCCCACGGCAGTGTCATGGGCCTGGGCTCATACCCCTCCCAGCTGGGGGTTAGCATTGGCGAGCCAGGACAAACCAGCCAAGgtTATATTCGTAACTCCAGCAGTTTGTCCCCCCGGGGGTacccctctgcctccacccctcaGCAGTCGGGCTATGGGGGTGGTGGAGGCATGAGTGGGGGGTACGGGGCAGTGCCCATGACTAGTCTGGGGGTGCCAGGGTCCCCTGGTTTCAGCAGTGCCTCCCCCACTGGTTCTCCCTATGGCATAATGCCATCTAGTCCCACTATCCCGGGTTCCagctcctcctccctcctgccgTTCTCCTCCTTCCCGTCCTCAGCCAAACAGAAGAGCGCCTTCGCTCCTGTCCTCCGGCCCCAgggctcctcctctcctgcctgtccCGCTTCAGGAGGCAACAGCTTCAGAGCGATGACTGGCCTGGTAGTTCCCCCGATGTAGCAGCACTCCACCACCTCCCATCCATCACcaacaaaccagaccagaccaatgCTCCCACACTGCTGCCCCTCTGCAGGCACTGACAGGGATACATGGAACACACACTGACTTCTCAACCACCAACAACTCTCCACACTGATGCCCTGCCACTTGTTGAGTCCATGTTTCATCCAACTGAATGAAAGGGAATGGGACAGAAAGAATCCAAAGACCAGCCAGTCACTCCAGATGCAGAGAGAAGAAGACCTCTTCATCTGCAGTAGCTGTAAAGACATGAGACTTCCTTGggccacaccacaacacaatggAGCTCTATGGGTGTCTATGGGTGTCTCTGTATTTTGAAAGGACAGCAGAAGTCAACGTCAAGATGCCTTCACGAGCTTCAAAAGCACTCGTACCACCCAATGCTACAGCCATATGCAGCATTTGGTTCTTCCAACAAAAACACCTTCCCTAAACTGATCAACCTCTTGGCTAGCAGTGTGCTAGAAGAAAATGTCTGTTGATGATTCGTTGTTAGAGAACTGAACTGAATAGACAATGGACAACTCTGATACTATGTGCTGAAAGTCTATGAAGCAGGGTGCTATTTGTCTCTGTCAGGACACTGTCAAAGGCATGTATGTACATTGTCCCTGAGAAGACTCCAAGTTTTTGAAGATGATTTACATTCCAGAATGATAGACCCTTTATTTTTTGTTCTGATCCCCATCATTTTACAAGGACAAACTCTTTGTCCTCCAGGGTTGGTAATACAACATTTATTCATATATTGATTtatttaagaagaaaaaaaacaagcaatTTAACTTATTATTATAGTTACTTTAGGGAATAATATAAACATGTTTTAATTCCTTTTTTTGCAATTGTTATAAATATGATTATGTCATCGCTATGTTGCCATTCTTGTTGTTTTAATTGAAATCTTTGAAGTTTTGTCAGACATGACTCATGATTAATACATAAGAGAGAATGAAGTAATACGCCATGAAACGTTTATTTGAAATCAATTCTTGGCCAATAATATTTTCCCTGGTTTGTCACGTAACAAAATACAACTGTTATGTCCAGTGTAAAAAAAAAGCACATTACCTTGCTGTTCTCCATAAAGGAAAATGAGTTAGcctatattattattaatttCGTTTGTATGCATGTTATTTCCACACTGATTCCCTGCTATTATTTCATTACATGTTGCAAATTTGAAATTGTATGTCAAAATTTAGGATTTTGAATTGTTCATTCATTTGATGTTTTTCATCCCATAGTCTCTGGTCACGATGCAGTAAAGTAACAAGCATACATAAACTGAAAACAAAGTAAGGAACATGTTGGGGATTTGTTATAAACCCATGCAATGGTTTTCTTACTCACTGTTGTAGCACAATACAAGCATCATACTCAGGATTAGAAAACAAAGAATTGAAAAGAGGTAGCTAACATCTATTCAAAGTTGTTTGTTGTGTTTTGCtggttttatttatttgaaaGTCGTTAGTAAAATGTAAGGTTACTCAAAGTTTTTTTCTCCCAAAACCTATCTTTCTTTTTTAATGGTACAGAATAACATGATGACTGTCTGAAAATGTGATTTGTATATCTTAAACTGTAATTATATTTTGTCCTcccaaataaaacaaaaaaatcacAGTAA

Function

GO: NA

KEGG:

id description
K09103 EBF, COE; early B-cell factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1137181 lncRNA upstream 23394 59060379 ~ 59060632 (+) True G999316
TU1137177 lncRNA upstream 40609 59043098 ~ 59043417 (+) True G999313
TU1137168 lncRNA upstream 53153 59030541 ~ 59030873 (+) True G999305
TU1137164 lncRNA upstream 58334 59025393 ~ 59025692 (+) True G999301
TU1136759 lncRNA upstream 77331 59005468 ~ 59006695 (+) True G998949
TU1137273 lncRNA downstream 174491 59295387 ~ 59298060 (+) True LOC110536085
TU1137384 lncRNA downstream 255534 59376430 ~ 59376676 (+) True G999487
TU1137259 lncRNA downstream 263916 59384812 ~ 59385587 (+) True G999374
TU1137392 lncRNA downstream 280895 59401791 ~ 59402224 (+) True G999495
TU1137393 lncRNA downstream 281562 59402458 ~ 59402819 (+) True G999496
XR_002475499.2 mRNA upstream 5336 59074038 ~ 59078690 (+) True LOC110536636
XM_021621623.2 mRNA upstream 31145 59047677 ~ 59052881 (+) False LOC110536082
XM_036935933.1 mRNA upstream 31145 59047677 ~ 59052881 (+) True LOC110536082
XM_021621622.2 mRNA upstream 59889 59018252 ~ 59024137 (+) False LOC110536081
XM_036935949.1 mRNA downstream 51663 59172559 ~ 59347967 (+) False LOC110536085
XM_036935945.1 mRNA downstream 51663 59172559 ~ 59363415 (+) False LOC110536085
XM_036935944.1 mRNA downstream 51664 59172560 ~ 59363415 (+) False LOC110536085
XM_036935938.1 mRNA downstream 51666 59172562 ~ 59363415 (+) False LOC110536085
XM_036935935.1 mRNA downstream 51669 59172565 ~ 59363415 (+) False LOC110536085
TU1136311 other upstream 781039 58301585 ~ 58302987 (+) False G998557
TU1137372 other downstream 243005 59363901 ~ 59371176 (+) False LOC110536086
TU1137377 other downstream 243005 59363901 ~ 59371295 (+) False LOC110536086
TU1137378 other downstream 243005 59363901 ~ 59371409 (+) False LOC110536086
TU1137371 other downstream 243032 59363928 ~ 59371176 (+) False LOC110536086
TU1137373 other downstream 243032 59363928 ~ 59371409 (+) False LOC110536086

Expression Profile