RNA id: XM_036935945.1


Basic Information

Item Value
RNA id XM_036935945.1
length 10201
RNA type mRNA
GC content 0.51
exon number 43
gene id LOC110536085
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 59172559 ~ 59363415 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtGAACACGCTCTctcagacgctgcagggccataCGAAGGAACACACACCGGCACCATCAGCGTCAGGGTCTGCCCGCGGCAGGCAGGACCTCCAGCACTGCAGCCTCCCAGCTCCCCAGccccaacccaggacctccagcACTGCAACCCCCAAGCCCCAGCCCCAACCCAGGACCTCGCCAGGCCTCTACCACCTTCATCTCCACAAGACAGTCGTCTCAACCAGGCTGAAATATGGCACAAGCCGCCAAACATCTCGTGAAGAACAAGGAATTAAAAATCCAGCTCGAGGCGGAGCGCCtgcagaaggaggaggagaaggccaAGAAGAGGAACCGATCGCGGGATAAAAAGCGCAAGGCCCACGCGGTGCATCGCTGGCTAATCGATCAGGACGATAGTTTGAGCTCTGAGCTGCCGGATGGCCAAGGAGTATGGCACTTTGATGAAGCAGCTGATGCTGTCAGTAGTTTTCTGCGGGCGGCTCGTTCTGGTAACATGGACAAGGCCATTGACCACATAAAGAATGGCATAGACATCAACACAGCCAATCAGaaCGGGCTGAACGGGTTGCATTTGGCCTCTAAAGAAGGCCACGTTAAAATGGTGCTGGAGTTACTACATGGAGGCATCGATGTGGAAACCCAGACTAAGAAAGGCAACACAGCTCTGCACATTGCTGCCCTGGCTGGGCAGGAGCAAGTGGTGGCAGAGCTGGTAAATTACGGGGCCAACATCAATGCCCAGTCCCAGGTGAGACCCCAGCCAGTGTCGGATGAGACCCCGACCCCCCTGGCAGAGCCCCCCGCAGAGGAGCCACCAGCCACAACGGATAACCATACAaagGGCTTCACTCCGCTCTACATGGCCTCACAAGAGAATCATCTAGAAGTTGTGAAGTTCCTTTTGGAGAACGGGGCCAATCAAAGCCTTCCCACTGAGGATGGCTTCACCCCTCTCGCCGTGGCTCTTCAGCAGGGACATGAGAATGTCGTGGCCCTGCTCATCAACTATGGCACCAAGGGAAAAGTCCGTCTCCCCGCGCTGCACATTGCGGCGCGGAATGATGACACACGCACAGCTGCCGTGCTTCTACAGAACGACCCTAACGCAGACGTCCTGAGCAAGACAGGCTTCACACCGCTCCATATCGCCGCACACTACGAGAACCTGAACGTAGCCCAATTGTTGCTCAACAGAGGAGCCAATGTCAATTTCACCCCTAAGAATGGCATCACACCTTTGCACATCGCATCCAGGCGGGGGAACGTGATCATGGTACGACTCCTGCTGGACCGAGGGGCACAGATTGATGCCAAGACCAAGgatGAGTTGACTCCACTGCACTGTGCAGCCAGGAACGGACACGTGAGGATCATTGAGATCCTACTGGACCAAGGGGCTCCCATCCAGGCCAAGACCAAGAACGGCCTGTCTCCCATCCACATGTCAGCACAGGGGGACCACATGGACTGTGTGAGACAACTCCTGCAATACAACGCTGAGATTGATGACATCACATTGGACCACCTGACCCCCCTGCACGTGGCAGCCCACTGTGGGCACCACCGCATGGCCAAAGTGCTGCTGGACAAGGGAGCAAAACCCAACTCCCGTGCACTGAATGGTTTCACTCCGCTTCACATTGCCTGTAAGAAGAACCACATGCGTGTGATGGACCACCTGCTCAAACACTCAGCGTCCCTAGAGGCTGTgacagagTCTGGCCTGACTCCTCTACACGTGGCCTCGTTCATGGGCCACCGCAAAATAGTCACCCATCTGGTACAGAAGGGGGCTTCTCCCAGTGCTTCCAATGTAAAAGTGGAGACTCCTCTCCACATGGCATGTAGAGCTGGACACTATGAGGTGGCAGAGTTCTTACTGACCAATGCAGCACCAGTAGACGCCAAGGCAAagGATGACCAGACACCGCTCCACTGTGCGTGTCGGATGGGCCACAAGGAGCTGGTAACTCTGCTGCTGGAACACAAGGCCAACCCCAACTCCACCACCACAGCCGGACACACACCCCTCCACATCGCTGCCCGTGAGGGACACACTCAGACTACACGCATCCTACTGGACATGGAGGCCCAGCAGACCAAGATGACCAAGAAAGGCTTCACTCCTCTCCATGTGGCTTCTAAATATGGCAAAGTGGACGTGGCAGAGCTGCTGCTGGAGAGAGGGGCCAATCCTAACGCTTCTGGCAAGAATGGACTGACTTCTCTCCATGTGGCTGTCCATCACAACAACCTGGACGTGGTTAATCTGCTGGTCAGCAAGGGAGGCTCCCCACACAGTGCAGCTAGGAATGGCTACACCCCTCTCCACATAGCTTCCAAGCAGAACCAGGTGGAGGTTGCCAACAGCCTGCTGCAGTACGGCGCCTCGGCCAATGCTGAATCCCTCCAGGGGGTCACGCCCCTTCACCTGGCAGCTCAGGAGGGCCGGCCTGACATGGTAGCCCTGCTCATCTCCAAACAGGCCAACGTCAACCTGGGGAACAAGAGTGGACTGACTCCTCTCCACCTGGTGGCACAGGAAGGCCACGTGGGCATCGCTGACATCCTGGTGAAGCAAGGGGCATCAGTGTATGCTGCCACACGGATGGGATACACCCCTCTCCATGTTGCCTGCCACTATGGCAATGTAAAGATGGTGaagttcctcctgcagcagcaGTCCAACGTCAACAGCAAGACCAAGGTTGGTTACACTGCACTGCACCAGGCAGCCCAACAGGGCCACACAGATATCGTCACCTTATTGCTCAAACATGGAGCCCCGCCCAACGAGGTCACCACTaaCGGTACGTCAGCCCTGTCCATCGCCAAGCGGTTGGGGTACATCTCCGTAATCGACGTTCTCAAACTGGTCACAGAGGAGACGGTTTCCATTACCACCACAGAGAAACATCGTATGAGTTTCCCAGAAACAGTGGATGAGATATTGGACGTATCAGAGGATGAAGGAATTGCACAGCTAACAATGGGGGAGGAGCTGTTGGGGACGGAAGGAGCCAGGTACATGAAGATGGATGACTTGAAGGACCATGATGACGATTTCCTGTCACCCAAGAAATCTATGGACAACTACTCGCCTGCCATTCCCAGGATACCTTGTGTATCCCCAGAGATGGTCCACCTAAAAGAGCATGAGATGGAGCAGGTACACACTCCAATGCCATTACATAGGGAGTATGATGACGACTCCCTGATCCCCAGCAGTCCAGCTACAGAGACTTCTGACAACGTCAGTCCTGTGGCCAGCCCCATACACACAGGGTTCCTAGTGAGTTTCATGGTGGATGCTCGGGGTGGCTCGATGCGAGGCAGCAGACACAACGGTCTGCGTGTCATCATCCCTCCACGGACCTGTGCCGCCCCCACACGTATAACCTGCCGTCTGGTCAAGCCCCAGAagctccccacccctccccccctggtggagggagagggcctGGCCAGCCGTATCATCTCTCTGGGCCCAGCCAGCATGCAGTTCCTAGGgccTGTGATCGTGGAGATCCCACACTTTGCAGCCCTGGGTCGAGGGGACCGGGAGCTGGTGGTTCTGAGGAGTGAGAATGGCTCTGTTTGGAAGGAACACCGCAATCGCTACGGGGACGATGTGCTGGAGACTATCCTCAATGGGATGGATGAAGATCTGGAGAGCCAAGAGGAGCTTGGGAAGAAGCGTATCCGACGAATCATCTCCACTGACTTCCCCCTCTACTTTGCTGTGGTGTCGCGTGTCCAGCAGGAGAGTGACCTGATTGGCCCAGAAGGGGGTCAACTGACCAGTAAGCTGGTGCCGATGGTCCAGGCTACGTTCCCTGAGACAGCGGTCACCAAGCGAGtccgtctgggcctgcagGCCCAACCAGTCCCAGACGAGCTGGTTGCCAAGCTGCTGGGTAACCAGGCAACCTTCAGCCCCGTGGTGACTGTGGAGCCAAGGCGACGCAAGTTCCACCGGCCCATCGGCCTGTGCATCCCCCTGCCCCCCTCCTGGAGAGAGAGCCCCCGGGACTCCGGGGAGGGGGACACCACCAGCCTGCGCCTGCTGTGCAGTGTCATCGgTGGCACAGCCCCAGCCCAGTGGGAGGACATCACTGGTACCACCAAGCTCATATATAGCAAAGACTGTGCCAACTTCACAACCAATGTGTCAGCACGgttctggctggctgactgtcctAGGACAGCCGAGGCTGTGTCTTTCTCCAACCTCCTGTATCGAGAGCTCTCAGCTGTGCCCTACATGGCCAAGTTTGTGGTGTTTGCCAAGATGAACGAGGTTCGTGAGGGCCGCCTGCGCTGCTACTGCATGACTGATGACAAGATGGACAAAACCCTGGAGCAACACGAGAACTTCAGTGAGGTGGCCCGCAGTCGTGACATCGAGGTGATGGAGGGAATGCCACTGCACCTGGagtgttctgggaacctggttcCAGTGAGGAAGGCTACCCAGCAGCCTCGCTGTTTCAGCTTCCAGGCCTTCAAAGACAACAGACTCCCCGTCTCAGTCAAGGTGAGAGACAGTAGCAAGGATCACTCTGGATTCCTGTCCTTCCTACGCAAGTCTACCAAGTATGAAGACAGCCAACATGTGCTGTGCAACCTCAACATTACCATGCCCCCGTGTATCAAGGCTGCTGGTAGTGAAGACCGGAGGCGAACTCTGACCCCATTAGCCCTGCGAGAGAGATACAGCGCCATGAATGAGCCTGCCATGGGTAAAGCATCAATGAGTGCCATGGAAAGGACAGAGTTGAAGATGGCTTTGATAGCTGAACAGTTGGGACTGAGCTGGGCTGAGCTGGCGAGGGAGCTACAGTTCAGTGTAGATGACATTAATAAGATCCGTGTGGAGAATCCTAACTCCCTATTGGAGCAGAGTTCTGCCCTGCTCAACCTATGGGCCACCCGTGAGGGCAAGAGAGCCAAGATGGATAGTTTGTATACAGCTCTGAAGAGCATTGACCGGATGGACATAGTGAACATGTTGGAGGGCCAGGGGCCACAGCCTGCAGGGAGGCAGGCCCGGGAGTCAAGCAGACGCAGACACAACGAGACTGACCACGTCTCCCCCAGCCTGAGcaatgGTTACGGGCTGATGCAGGAGGAgctgctctcccctccctccatgcaGTACAGCCTGCCCTCCCCGCTGGGCAACGAGCCCTACTGGCAGGAAGTCTCCAGTCTGGAGTGTGCTCCAATGGCCACCACTGAGGAGGACACGCTCATGGAGATGTCCGATGTGCAGGTGTGGCCCTCTGGCAACAGCCCCTCCCTAGTGGCCGTGGAGGACTCCTCGCTGGAGTGCAGCAATGCCGACGACTCGGAGGGGCTGCTGGGGCTGCCGTATGGGAGCCTGGGCCGGCCGGGCAGTGGGGCCAGCGGTGGGGGGCTGAGTGGATCTATGGAGCTGGTGGAGGACAACTCAGAAATGGGGGCTGTTGACTCATTCAGCACCGCCACACATGCCACCCCTGCCTCGTTCAGCACCGCCACACCTGCCACCCCTGCCACCCCTGCCTCGTTCAGCACCGCCACCCCTGCCACACCTTCTTCGTTCGGAGGCACCATCGCCGCCGCGGTCAACAACATTAATGGGCTGGACAAAGGTCAAGTGTCAAATGTCGTGAGGTCGGAGGCAGCAGCGGTCGGAGGCAACATGACGGGTGGagatggagctggaggaggaggaggaggaggagggacaggcTCAGAGGAAGGGCTTTCTCTTGTTGCAGGACAACAGCAGCGGGTGTACGCCCGGCTGAGCGAGTCGCCCGGTCTGAGCCGCGTGGCAGATCGTAATGGAGACAGGTCCAGTGGTGGCAGTGGAGGCAGTGGAGGCagcggtggaggtggtggaggctCTTTCCTGTCCTACCTGCAGGAGCAGTCGGGTCCAGGCTGGCAACCTGTCACAGACCACACTCAGGCCTGGGTGGGCTCGCAGACAGCCAAACCCAGGCAGGCCATGGACTCTATGATGTCATCAGTACGCGCCGCCATGGACGTGGACCCCAGCCAGTCCCGCGTGTCCCAAGAGGCCTTGCTTCAGCCAGTGCGTGACATGGGGCACACGGAGATCCTGCGTGGGCACTTCAGAGGCACCCAGCCATTTGAGAAGGGCCTGGGGTTCCCTCACAGGGTGCCAGAGCTGCGGACCTGGGACGAAGTACGCCTGAGGGGGCAGGGTGATGAGGCCAAGGATCTCCCAGGGGAACAAGTGAGCGAGGAGCAGTTCACAGACGAGCACGGAAACATTGTCACCAAGAAGGAGTTGAACCCCACACCAAAACAACCCTACTTAGACACATGACCGGCAGCAGGAGACAGGGGGAAGAGTGCACATGAAGAGGAGTGTAATAATGGAGATAAAAGAAGAGAGATCTGAATGACAAAACACCAACTTCATAATAACGACAACCACAACGGCTACGCCGATGATCAGCACGCACCGGAGAAGGAAATGGATTTACTTGTAGTTttcgtactttttttttttttaagaaacaataaaaaaaaacattaactaCTAGGCTAGAAGCATGATTTCGTATAAAACAAAAACCAAACAGAGACAACAAAAAAACTAGCAACCAAAATGTGCTTCCTGTTATATGTATCAGCATGAATGACTGCTGGCGCATGGCCTGTCTTTAACTACAGTACTAGGGGTTATGGGAGGGGGGGGGACCACTCCCATGTGGGATGGGAGGTCATGATGAGGTGTAGGGAAAGGTGAATATGTCATACATCCCTTTCCTGAAGAAAAAGGGCAGTGTTTGTTTGTGAAACTTCTGAAAAGGGAGTCTGTTAAATACTCTGAATTATCTCTAGGCAAAGGTTTGCTCCCCTCTCCCTGTCACACTAATCAAACTCTtctagcaaacaaacaaacatcacCACAGGCTAGTTTCAGCCTTATGTCCCACTGTCCCACTCCAGTAGCCTACACTTAGGATTTTGGTGTTGTACATACTATATGCACTTAAATGATACGTGACTGAGTGTTACGTGTGTTTTATGTCACAAAAACCTTATGCGATGCTGATGATGATGCTGCTGTTTCAGATCTGTCCTGGTTTTCTTGTTTGGTTAACTCTATGTGCATATTCTATATATCTTGATCTGTGTGGACAtaagaacaaacaaaacaatctTTGTGTCATTCTGCCTGTTTTATCTGTCAGTTTTTGTTTGTCTGGttatttgttattttgtgattTTCATGTGCTCCCTCCCTTTGCTCCCTTCATCTCACCTACAGGGCATTATTGGCTTCAGAAACATTTCATAGTTCTTTGTGTTTTAGGAAGAGGAGTTTCTGTGTTGACTTGCATCCCCAACCCCATAACCAACCTACCCCAGAGTGGTTTGTGTGTTTCCAAGGTGAAAGTTATTGGAGTAAATGCTGGTGCGATTATTAGGACTTTGAACAGGCCTTTCCCCTACCCTACAGTATGTGTACAGCTATAGTCTAGTTTGTCTGGTGGATCCTGTCACCACCATCTCCTGTATGCAGCCCACTTCAGGCATCTATACACCCCATCCTCCCTACACCTCTCCCTGCACTCCCCCGTCCCTCTCAATGTGGATGTAGCAGTCCTGTCCTGTCCCTATCGATGTGGATGTAGTAGTCCTGTCCTCTACCAGCAGGGGTCAGGGTTTCATAATAATTAATGTAGCATCTCCCCTCTGTTGTGTCTGTCCAACAGCGACAGTGTTTCTGTCTGATATCACAGGATATATCCAAGAAAGAGTTTACAGATCATCTCAGCACCTACCCATCATTCGATAAGGGTAAATGAGTTACTTGACCACCATAGGCAATAATGTAGCTTTGGTTAAGCTGGTTACAGGTGAGAGTCAGCCAGAGAGAGGAACGTAGCTACTGAGATTTGTAAGTGTTGGGATTGTAAGTGTTGTTTGTATTGTTGGCAACTCTCAGAAGTGTAGCGAAGACAGCCAGCCACCAATCACTGTgataaaaaactgtaatattgaCCCCACAACTGTGAGCCCACACAAACCCACCCCAAACCTTGCTCCtgtcctctcacccctctcttcaTGTCTGTACAACCCTACCCTGTTTCCCATCAGAAATGTATTGTTGGATGTTTGTTTAAAGGAAATCAATAACTTTGGTTGAAGGAGtaggtctttgtgtgtgtgtgtgtgtgtgtgtgtgtgcactatgATCCCCTTGATCACTCACTACTTTGACTTTAGATGTACTGTCTGATCAGGAGCTATGCCAGAACCCGAGTAACCCACTTGCTATCCACTTGACCTGAATGGAACAGAAAGAGTTTTGGTTGTGTAAAGTAGACCAAGGAGACATGTTAGTGGACTGAGTAAATGGTTATGGGTTGTTGGAGAGTTCTCTTAATCCAAATGTTTTTCTCCCAGTCCCAacagtgtttatttttttgtgtgtgattgtgtgtgtttgaaggTTGGGGGGGCAAGGAATCTAATTTCATACCAGCCATTCCCTGAGTTTTATGCAAGCTGTCAAATGTCTCATTTTCAAACTCATCAAGGGAATGTAGCAACACTGAAAAACAGCTAAAAGTGTCCACTCATTGTTGATTTAAGCCTTAATGACATTCATATTTTACTTTAAGGAAACATTTGAATGTTGTGTGCGTGAGTGCATGTGATGAGTCCTCTGATTGTAAGTACAATTGAGACTGACACAGTACAACAGCATTTAGTTTCGACAAATGACAGTGCAGGGTTGAAGGAGGTAAATCGGCATGGGTGTGAAAGTGATATGACACTACTGGTGGACATAACACAGGCTCTCCAGTCCCTAACCTTATTCATACAAAACATGGTCACAGTAATGTTACCTCAGTACATTATACCATCCTACATCATATTAGATGTATAGATCATCTTGGCACTGTACCGTAACTGATCTAATACATTACATTTCTCATATCGAAGGAAAATGTGTCACAAACACTCCAGCGAGTATATGAATCAACACtctgcaataataataatacctatACATGTAAATGAATCTCCAGTCCAGGTCCATGCTTTATCCGCCTCTGTAGCCACAGATAATGAATGTAAGGTGTTGCTCTGTAGATGTTAGTTGAGTAGGAAGGCTAGATGTCAGGCTGTTTGAGTCTATCTACAGAACTCAGGATCTGTTGTTTATCAAAGAAACTGTATAAAACTGAACACTCTTATATATGCATACATATTCATAAGTCAATACCCATCCATGCATGATCAGAACAAGAGAatgagcaagagaaagagaacagatcTTCAGCTCAGGATTTTGTATTGAGACATTTTATCATTAACTATCCCTCCCTctgccggggggggggggcagggaaaGCAGACTGGGCTATGTGGATCTATGGGAGAAGAGCGTTAGACAACTCTCTGAGAATACATGGGGACTTCATTTGCTAGGTTTTTTTTAGATGGCAAGCATTTTTCCTCAACACCGCCCACCCCCATTCCATCCCTGCTCCCTATAACCAAAAAGAGATTGAGCCAGTTCTAAGGCTTCCTTCCACACAGTGACAGGTTGAGCGGAGGAGTCaatgagagggaggagtggatAGGACTTTAGACTTATTCAAAGTTATAGTGAAAATATCATGAACTGAAGGACTATGGAGGTGACGACATAAACCAAGTTCATGCAAAAAAATATTAACTGTTGCAAAAACTAGAGAACACATATACTCCTTTAGAATGTATTGAAGACATTATTAACGCAATAGCATATTACTCAATACTTAGGAATGCAACTGCGCACATGCAcagaaaatgtttttaatataaatgaatatatatataatatatgaaaatatatatttacttAGAATGCTATGCACCCTTGTCAACAGGATTATAGTAATGTTATGGATGTACTTTTGGCATCATAGCTACCAAGAGACTGTTGAGTTATGGGTAATGCCTGAAACCTGGGAAAAAATAGGGGTCTTGTGGGTATTTTAACTTGTTTTGTTTGCTTTTTTTATTGTTATGAAGAGGTCAAATATGGAAAACGTATATAAATGTACAATCCTTTTAATCAAATGGAATCCGATGACATCTATAGATAATCTACCCTGTACACCAGCTCAAATCATTTACAAAATTAATAAAGAAACGAAAtgtccctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1137181 lncRNA upstream 111927 59060379 ~ 59060632 (+) True G999316
TU1137177 lncRNA upstream 129142 59043098 ~ 59043417 (+) True G999313
TU1137168 lncRNA upstream 141686 59030541 ~ 59030873 (+) True G999305
TU1137164 lncRNA upstream 146867 59025393 ~ 59025692 (+) True G999301
TU1136759 lncRNA upstream 165864 59005468 ~ 59006695 (+) True G998949
TU1137384 lncRNA downstream 13015 59376430 ~ 59376676 (+) True G999487
TU1137259 lncRNA downstream 21397 59384812 ~ 59385587 (+) True G999374
TU1137392 lncRNA downstream 38376 59401791 ~ 59402224 (+) True G999495
TU1137393 lncRNA downstream 39043 59402458 ~ 59402819 (+) True G999496
TU1137366 lncRNA downstream 52001 59415416 ~ 59416733 (+) True G999476
XM_021621626.2 mRNA upstream 51663 59082752 ~ 59120896 (+) False LOC110536084
XM_021621627.2 mRNA upstream 51663 59084026 ~ 59120896 (+) False LOC110536084
XM_021621628.2 mRNA upstream 51663 59084026 ~ 59120896 (+) True LOC110536084
XR_002475499.2 mRNA upstream 93869 59074038 ~ 59078690 (+) True LOC110536636
XM_036935933.1 mRNA upstream 119678 59047677 ~ 59052881 (+) True LOC110536082
XM_021621630.2 mRNA downstream 472 59363887 ~ 59371449 (+) False LOC110536086
XM_021621636.2 mRNA downstream 25785 59389200 ~ 59393203 (+) False LOC110536090
XM_021621635.2 mRNA downstream 25823 59389238 ~ 59393203 (+) False LOC110536090
XM_021621637.2 mRNA downstream 25862 59389277 ~ 59393203 (+) True LOC110536090
trnaa-ugc-51 mRNA downstream 152706 59516121 ~ 59516196 (+) True trnaa-ugc-51
TU1136311 other upstream 869572 58301585 ~ 58302987 (+) False G998557
TU1137372 other downstream 486 59363901 ~ 59371176 (+) False LOC110536086
TU1137377 other downstream 486 59363901 ~ 59371295 (+) False LOC110536086
TU1137378 other downstream 486 59363901 ~ 59371409 (+) False LOC110536086
TU1137371 other downstream 513 59363928 ~ 59371176 (+) False LOC110536086
TU1137373 other downstream 513 59363928 ~ 59371409 (+) False LOC110536086

Expression Profile