RNA id: TU1137373


Basic Information

Item Value
RNA id TU1137373
length 1293
RNA type TUCP
GC content 0.43
exon number 3
gene id LOC110536086
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 59363887 ~ 59371838 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGAAAGTCCTTTAATAAATAAAGAACCTGGCCTCTGCTATAGGTTTGCGTGTTGGAATGTGTGACTAGTTAACATTATTTGTACTTATTATTTTATGAAAAGTAGCTAGTTTGCTATTGACCCACAACAAAAGTTGAATGTCCAGGATCTTTACGTTGTTTAATTTGTAGATATTAGAAAACGGCCCTGTGTTTGGAAAATGTCTTCGGTCTGTCAGGAAACCACTACTAACTAGCAAGTCCATTCCGACCAGATGGGTGACTATAAACGACGCGGCGCACATGCCCCACGACTACTCCACAACTCCCGGAGGAACTCCGTTCACCATAACTCCTGGAGGTACAAGAATTATCTACGACCGGCAGTTCCTGCTGGAGTGCCGCACTTCCCCGCTGGCCAGGACTCCCCCGTACTCTCTCCCTGACATTCCAGGGGTCACCAGCCCACCCTCAAAACACATCACCAATGTAAAGGCCCATAACGGAGAACCACTGAACAACAACATCGTGGCACCTGCTGACAAGAGTGCTGGGGATGATGCACAGTTTGAAATGGACATCTAACTGGTGGTGAAATGAGCATTCTAGAGGGATGTGAAACAACTGCACATACTACCATGATGCTAAAGAAGAGGCCCAGCCAATCCCCTGTCCAGACTCGCTACAATATTGTCACCCTGTGTTTACAGATGTGTCCATTAGTTGCTGTGTGTTAACTTTCAATATCAGTGGTGTTGTTACTGTGAAAACTGCTCAAAGGTAGCCTGTTGCCTTTCTCTTGTGAACCCAGCAACAACACTGAAAAAGACTGCCCCAGAGGAGTGGTGTGGAGGTAACGATTCAATACAATTGTTTTCATTCTTTAAAATTATTTTGACACTCAAATCATCCTAATCATGGGCTAACCACCCTTCACCTCTCTTCAAATACTGccttcaaaaaaactttacattTTTACAGATAGTCATACAAAGGAATGTTTTTGTCACCTTAAGTTTTGagacaaaataaatacattttcacatgGTATGTAAAGAATAATAAATAAAGCAAAGAGAACATATATTTGGTAGTAGACTTGTTTCCTAAAAAGTAACCCGTGTGAATAGAATGGGTATGTGTATTCCAGAATCACAGGATAGCTTCTGTCAAACCCTCGGGCACTCTCTGTGATCTGGCAAGTGTCATTAGTCTCATGGTAAATGGGTTGCTGACTGCAATACATGTTCCCCTACAGGAAAACCCCTTGGTATCTGACAGGAAAAAATGAATGACCCACAAATGGTTATTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1137273 lncRNA upstream 65868 59295387 ~ 59298060 (+) True LOC110536085
TU1137181 lncRNA upstream 303296 59060379 ~ 59060632 (+) True G999316
TU1137177 lncRNA upstream 320511 59043098 ~ 59043417 (+) True G999313
TU1137168 lncRNA upstream 333055 59030541 ~ 59030873 (+) True G999305
TU1137164 lncRNA upstream 338236 59025393 ~ 59025692 (+) True G999301
TU1137384 lncRNA downstream 5021 59376430 ~ 59376676 (+) True G999487
TU1137259 lncRNA downstream 13403 59384812 ~ 59385587 (+) True G999374
TU1137392 lncRNA downstream 30382 59401791 ~ 59402224 (+) True G999495
TU1137393 lncRNA downstream 31049 59402458 ~ 59402819 (+) True G999496
TU1137366 lncRNA downstream 44007 59415416 ~ 59416733 (+) True G999476
XM_036935948.1 mRNA upstream 513 59291245 ~ 59363415 (+) False LOC110536085
XM_021621636.2 mRNA downstream 17791 59389200 ~ 59393203 (+) False LOC110536090
XM_021621635.2 mRNA downstream 17829 59389238 ~ 59393203 (+) False LOC110536090
XM_021621637.2 mRNA downstream 17868 59389277 ~ 59393203 (+) True LOC110536090
trnaa-ugc-51 mRNA downstream 144712 59516121 ~ 59516196 (+) True trnaa-ugc-51
XM_021621650.2 mRNA downstream 274416 59645825 ~ 59650996 (+) True rhbdd3
TU1136311 other upstream 1060941 58301585 ~ 58302987 (+) False G998557
TU1139524 other downstream 1823682 61195091 ~ 61196077 (+) True LOC110535084
TU1140000 other downstream 2415854 61787263 ~ 61790796 (+) False LOC110536169
TU1140295 other downstream 2929768 62301177 ~ 62302835 (+) True G1002117
TU1140402 other downstream 3119772 62491181 ~ 62494341 (+) True LOC110536190
TU1142408 other downstream 4184556 63555965 ~ 63558816 (+) False G1004025

Expression Profile