RNA id: XM_021621953.2


Basic Information

Item Value
RNA id XM_021621953.2
length 1674
RNA type mRNA
GC content 0.41
exon number 3
gene id LOC110536263
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 66573376 ~ 66579635 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTGTTGACTTCCAGATAGGGGTAGTGTGGGAAAGTGTCACCCAACCCGACCAGCAGACTGCAGTGAAAGCGTGAGAGACCAGACCAGGAAAAAGAAAGAATATCGACTAAAAGAAAGATAGAAACGAACTATAATCAACTACAAATGAGAGAGGGTGAAAATCAACTTTGCGATATCTGAAAGCCACCTTGGTTAAACGCAACGTTTGTTCTGACACAAAGGTTTATGCCAAGACGCTCCTCTCAATGCATTGGTTTCGGTGACAGCTTTGGACAGGAATAGAGTTAGTGACGGTGAGAACAATGGAGAATGGGAAGAACCGCCTGCAGCAGGCCcaggatgaggtggaggaggtgaaggtGATCATGCTAGATAACCTCAACAAGGCTGCCGAGAGGTCAGGCAAGCTGGGAGATCTTGATAACAGGGCAGACGAACTTCTGGAGAAGAGTAAAGCTTTCTCAAAGTCTGCTCGGAAAGTGAAACAGCAGAAGTGGTGGGAACACATGAAGATGAAAGTGTTGCTGACTGGCGTAGGGGTCGTCATGGCAGCCATCATCATTGGGATCATTGTATGGTCAGCATCTGGACCTGACAACGGAGAGCAACCTGCTGCAGGGCAACCCACCTCAGGGCCTTAGGATCCAAGACTGTCTGTCAGAGCAAAAGACATGGAAGAAatgaagatggaggatggagatgGACACAGGGGCAGGCGAGACCTCAGAGGAAATAAGGAGTCAGTCAAGACAGAAATAGTGGCGGAAGATAAAGAGTGAGGttttctagcctggtcccagatctgtttgtgcttttgtCAAATAcattgctgtcattgtcaagccaaacatttTGCATGATaatgagtgacaaggagttggcatgatgatggcacaaacagactggcactcaggctgtAGGTTTTCCACCTAAGCTCAAACTAGGTTTTGTGGGTTGACTTTTCTGAACTATGCAATCTGTGATATTGTTTGTTTTTAGAGGCATTTCAGGCTCTGTGATCTGTGTGTAGATCGTTGAATGAAATGGTACCATCACCAGCTCAGCTGCTTCCCCATTCGGCATCATCTTCAACTGGACCTAGTTGGTCAGGCTCACTGGTTTCACATTCATACTCAGAAATGTTTCAGCCTCACCATAATATTTGGTATCGGTGAATGTTTTGTCAATTCAAATTAAACATATTGCGCCTTTGGAAtgtaaaaaatccccattggatgAATTGTGTGACCGTTTCAAAGTATTCCATTTAAGCTGTAAGGGGACATCACATAATTATATTTCTCATTAAATGTTTTGAGTAATTTCTTCTCATAATTTAATTCTTTGTTTTTACGGTCAAAATAAATATATGAAAATGCACATCATTTTGATATGTACATAAAACGCGGTTATGTTTGAGGCCAATTTGGGCAACGCagtatgaatatttatatttaATTTTTCATTCATTGTCTTACAGGTAATCAATGTGTACAGTATCAAAAAAACAGTGCTGAGAAATCACATATCTTCAGTTGTCCAAAAtctgttttttgtattttatatttgttACAGACTTCCCTTGCCCTTTTGTTGTTTACTCTTGACATACTAGTATTTGAAATATATATGTAAAATTGTAGTGCATTGTAAAATAAAAGGAATTGACCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1146416 lncRNA downstream 14173 66534132 ~ 66559203 (-) True G1007726
TU1146398 lncRNA downstream 44013 66528837 ~ 66529363 (-) True G1007720
TU1146384 lncRNA downstream 74200 66498892 ~ 66499176 (-) True G1007706
TU1146371 lncRNA downstream 95269 66477840 ~ 66478107 (-) True G1007693
TU1146370 lncRNA downstream 97155 66475713 ~ 66476221 (-) True G1007692
TU1146477 lncRNA upstream 56721 66636356 ~ 66636850 (-) True G1007776
TU1146480 lncRNA upstream 59111 66638746 ~ 66638960 (-) True G1007779
TU1146542 lncRNA upstream 108656 66688291 ~ 66688885 (-) True G1007841
TU1146556 lncRNA upstream 117961 66697596 ~ 66697901 (-) True G1007855
TU1146559 lncRNA upstream 119482 66699117 ~ 66699354 (-) True G1007858
XM_021621951.2 mRNA downstream 1326 66565298 ~ 66572050 (-) True rnf181
XM_021621952.2 mRNA downstream 1328 66565298 ~ 66572048 (-) False rnf181
XM_021621944.2 mRNA downstream 49280 66511861 ~ 66524096 (-) False LOC110536260
XM_036936163.1 mRNA downstream 49280 66511861 ~ 66524096 (-) True LOC110536260
XM_036936162.1 mRNA downstream 49311 66511861 ~ 66524065 (-) False LOC110536260
XM_021621956.2 mRNA upstream 12037 66591672 ~ 66595886 (-) False LOC110536264
XM_021621954.2 mRNA upstream 12037 66591672 ~ 66596295 (-) True LOC110536264
XM_036936165.1 mRNA upstream 17834 66597469 ~ 66624263 (-) False LOC110536265
XM_021621959.2 mRNA upstream 17834 66597469 ~ 66625840 (-) False LOC110536265
XM_021621957.2 mRNA upstream 17834 66597469 ~ 66625841 (-) True LOC110536265
TU1146168 other downstream 200427 66372642 ~ 66372949 (-) True G1007506
TU1144632 other downstream 1473820 65098960 ~ 65099556 (-) True G1006106
TU1144129 other downstream 2209599 64360764 ~ 64363777 (-) False G1005628
TU1144127 other downstream 2209599 64361239 ~ 64363777 (-) True G1005628
TU1142905 other downstream 2771374 63801529 ~ 63802002 (-) True G1004487
TU1148585 other upstream 1391436 67971071 ~ 67971328 (-) True G1009720
TU1149378 other upstream 2107622 68687257 ~ 68687962 (-) False G1010443
TU1149899 other upstream 2536872 69116507 ~ 69119486 (-) True G1010922
TU1149998 other upstream 2725701 69305336 ~ 69306428 (-) True G1011014
TU1152021 other upstream 4304841 70884476 ~ 70890991 (-) True G1012814

Expression Profile