RNA id: XM_021621956.2


Basic Information

Item Value
RNA id XM_021621956.2
length 1472
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC110536264
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 66591672 ~ 66596295 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGAAGAGGTGGGTCAAGGCGAAGGACTTTACTttaaggaagaaaaaaaaagttaatgAGCAGTAGGAGTCAACGTAGGCTGTTCAGCAAGAACATCAATATCGCATTATCCATAAAGAACAGTTATATAAATTGGATACATCGGGATTTTAAATAAACTCTCCGTTTACGATAAACCAAGATCGAAGACGATGGATAATGATTTGGAGCAGGGAGAGGTGGTGGAGCAGGACAAGGTGAGGACCCTGCAGTCTCAGGTGGAGGGAGTGAAGGACATCATGACCCAGAACGTGGACCGGATCCTGGCCCGGGGAGAGAGACTAGACGACTTGATGGGCAAGTCAGAGGACCTGCAGGCTGGGGCTGAGGACTTCAAGCACACGTCCCAGAAGGTGGCTCGCTCCTACTGGTGGAAGAACATGAAGCTGTGGGTGGTGATCGTGGTCATTGTCCTCGTCATAATCCTCATCATCGTACTGCTCAGCACTGGCGTCATCCCAACCAGCTCCCCTGTTCCCCCACTTCCCAAACCTACTAAAAGACCAAACTAGTCATGTTTTTCCTCACTGTGTTGTGTTTTAGCTGAGCTGGTTGCTAGAGAGGATGTCAGTGGGTTTTTTTGTTTTGAAAGATGGGGAAAACTTAGCTGCAATGGTATAGTGAAAGAAAGGGGGAAttgagagagggaatggagagtcTGAAGAAGCATGAGAGCCTTTTGACCTCTATCCATGACCTGATACTCCATCATACACAAACTGCGGGAACTCATGTCATGACTTAATGTGGGTTCTCATGGTCCATGTACTCAGGCCTTGGAAACTCTGGCTAACTCCAGACAACCTGTTGTGAGAGAGGTGGAATTGAACAGCTAACAACTCCCCTTGCTGGTCCAAACGAGTGTCATAGCTCCTAGGACTACTGTCGGCCATCTCATAGCTTTGCATAGTAGCTTTTGGTAGGCCCACCTGTATTCTTTAACGACTTGTGGGTTTTAACTCATCTCACTGTCCACTCCAATGTTACAATACCAGCCATGCTTTGGGGAGGTCAAGGAGTTAACTCCCATGCTTGTATATAGTTATCATACCTGTATATACATTTGTAAAGCACCCACATGGGGCCCTAAACCATTCCAATAGTGTAACAATGAGGTTAATTTGAGGctatttattgttttatttttgtcaTCCCTACTGAACATCTTTTCTTTTTTGTTTTTCATATGACTGTATTAATGTTGTTTTTAATCAACAAAACCAATTAAAGAAAATTATATGGACCCCCCCCCAGAGTCCTATCAGTAGATATGTGGTTTAGAGCTATAATTGTATTTTAGACAAGTAGGATGTATTGGGAATTTGGGCTAGTTTCAATTGCTATAGAATTCTATTATTTTGTTTTTCATTCATTGATGGAGTTCAATCATGTTATATCTGATTAATTATAGAATAAATAGCATTTACTTCCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1146442 lncRNA downstream 12078 66573838 ~ 66579594 (-) True LOC110536263
TU1146416 lncRNA downstream 32469 66534132 ~ 66559203 (-) True G1007726
TU1146398 lncRNA downstream 62309 66528837 ~ 66529363 (-) True G1007720
TU1146384 lncRNA downstream 92496 66498892 ~ 66499176 (-) True G1007706
TU1146371 lncRNA downstream 113565 66477840 ~ 66478107 (-) True G1007693
TU1146477 lncRNA upstream 40470 66636356 ~ 66636850 (-) True G1007776
TU1146480 lncRNA upstream 42860 66638746 ~ 66638960 (-) True G1007779
TU1146542 lncRNA upstream 92405 66688291 ~ 66688885 (-) True G1007841
TU1146556 lncRNA upstream 101710 66697596 ~ 66697901 (-) True G1007855
TU1146559 lncRNA upstream 103231 66699117 ~ 66699354 (-) True G1007858
XM_021621953.2 mRNA downstream 12037 66573376 ~ 66579635 (-) False LOC110536263
XM_021621951.2 mRNA downstream 19622 66565298 ~ 66572050 (-) True rnf181
XM_021621952.2 mRNA downstream 19624 66565298 ~ 66572048 (-) False rnf181
XM_021621944.2 mRNA downstream 67576 66511861 ~ 66524096 (-) False LOC110536260
XM_036936163.1 mRNA downstream 67576 66511861 ~ 66524096 (-) True LOC110536260
XM_036936165.1 mRNA upstream 1583 66597469 ~ 66624263 (-) False LOC110536265
XM_021621959.2 mRNA upstream 1583 66597469 ~ 66625840 (-) False LOC110536265
XM_021621957.2 mRNA upstream 1583 66597469 ~ 66625841 (-) True LOC110536265
XM_021621960.2 mRNA upstream 133344 66729230 ~ 66765764 (-) True LOC110536266
XR_002475392.2 mRNA upstream 276721 66872607 ~ 66874782 (-) False LOC110536269
TU1146168 other downstream 218723 66372642 ~ 66372949 (-) True G1007506
TU1144632 other downstream 1492116 65098960 ~ 65099556 (-) True G1006106
TU1144129 other downstream 2227895 64360764 ~ 64363777 (-) False G1005628
TU1144127 other downstream 2227895 64361239 ~ 64363777 (-) True G1005628
TU1142905 other downstream 2789670 63801529 ~ 63802002 (-) True G1004487
TU1148585 other upstream 1375185 67971071 ~ 67971328 (-) True G1009720
TU1149378 other upstream 2091371 68687257 ~ 68687962 (-) False G1010443
TU1149899 other upstream 2520621 69116507 ~ 69119486 (-) True G1010922
TU1149998 other upstream 2709450 69305336 ~ 69306428 (-) True G1011014
TU1152021 other upstream 4288590 70884476 ~ 70890991 (-) True G1012814

Expression Profile