RNA id: XR_002475392.2



Basic Information


Item Value
RNA id XR_002475392.2
length 1168
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC110536269
representative False

Chromosome Information


Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 66872269 ~ 66874782 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACAAACAACTCAAAATCCGGAAGCAATACCATAACTGCTTTTGACAGCTCCTCGTTCACTCTCATTTAACTACTAACAATAGTTTTTTATTATGGATTTTACTATAACTTTGATACGTTTATGTGTATTATCTTCATAGGATAATCATGCAAAACTGTAAGGATCGTAATGCAAATGTTTACACTAGTTGTTTTAGCGCTAAATATTTTCCTTGAGTTCAAACGTCATGTCAGATCAGCAGCAGTTAGAACCTATTATCAAGCGATTGCCAGATAAGTTTAATGGCGTCAGAGCCTTGGCGTGAAGTCAGCTGAGAGCTGCTGCCATAAGGGAGATTTATAAACCCCTCCATGACCATGTCTACCATCTACAGcttctGTGATGAGATGGAACATTTTGAACAGTGTACAGACCCAACATAATGAACTACAGGATCCTCCTGAACGAGCTAGGATTTGACAATGGCTTTACCACCCCTCTCCGTGTGCAGTATCTGTAGCCTCTCACATCTCTGCTCTACCCTAAATACGCTGCCTACACAGCCACAAGGCCTTCATGGTGAAATATGACATTCATGAAGACCTGGACCTCGTCTACCATTACGACAACGCAGAGGTCACTCAATGTGTCTCTGGGGAACCTCTACTTTGGTGACATGAAACAGGTGCCTCTGAGTGAGAGTGTCTACAGAGGTAGAGCAGGGAATGATAGAGGGTCTCCTATACAGAGGACAACACATGCACGGTTCCCTGCCCATCTCCTCTGGCCAGTGCTGGAACCTCATTGTCTGGATGAGGGCCTCACAGGAGAGGACAAAACTGTGCCCCATGTGCAAAAATAAGCCTACCTTGGTCGAGGGACAGGGCTTCACAGATGGCTTCACCAGTGACTCAGGGATGTCTCTTCTACAGGATGTATCATGCGTTCTGCGTTAACTTAATGCTGCTGGTCCATATGTTTTTGTGTATGTTAGTATGATTTGTGTCTGGATGTCTGCTTATCGTGGACATTATCGCATGTGCCAAAAAAGAGTTATAGAGAGGAAACGTGGTAGACATTAGGAACATTATTTCTACATAACACTGCACTACATACTTCATTACGCAGTGTCACATTTATTCCAATCTTTTCTAAATGATCATGTCCATAAAAAATATGTGTAGCCTGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1147182 lncRNA downstream 1060 66870570 ~ 66871547 (-) True G1008426
TU1146622 lncRNA downstream 143625 66727698 ~ 66728982 (-) True G1007918
TU1146620 lncRNA downstream 148355 66720929 ~ 66724252 (-) True G1007916
TU1146584 lncRNA downstream 153382 66718926 ~ 66719225 (-) True G1007883
TU1146583 lncRNA downstream 153920 66718380 ~ 66718687 (-) True G1007882
TU1147188 lncRNA upstream 8195 66882977 ~ 66883447 (-) True G1008432
TU1147189 lncRNA upstream 9044 66883826 ~ 66884133 (-) True G1008433
TU1147213 lncRNA upstream 41318 66916100 ~ 66936064 (-) True G1008456
TU1147227 lncRNA upstream 71708 66946490 ~ 66947153 (-) True G1008470
TU1147247 lncRNA upstream 99715 66974497 ~ 66975081 (-) True G1008489
XM_021621960.2 mRNA downstream 106843 66729230 ~ 66765764 (-) True LOC110536266
XM_021621957.2 mRNA downstream 246766 66597469 ~ 66625841 (-) True LOC110536265
XM_021621959.2 mRNA downstream 246767 66597469 ~ 66625840 (-) False LOC110536265
XM_036936165.1 mRNA downstream 248344 66597469 ~ 66624263 (-) False LOC110536265
XM_021621954.2 mRNA downstream 276312 66591672 ~ 66596295 (-) True LOC110536264
XM_021621972.2 mRNA upstream 117394 66992176 ~ 67012775 (-) True LOC110536273
XM_036936175.1 mRNA upstream 282248 67157030 ~ 67344172 (-) False LOC110535096
XM_036936176.1 mRNA upstream 282248 67157030 ~ 67344175 (-) True LOC110535096
XM_021621974.2 mRNA upstream 512954 67387736 ~ 67421927 (-) True LOC110536277
XM_021621975.2 mRNA upstream 607045 67481827 ~ 67534356 (-) True LOC110536278
TU1146168 other downstream 499658 66372642 ~ 66372949 (-) True G1007506
TU1144632 other downstream 1773051 65098960 ~ 65099556 (-) True G1006106
TU1144129 other downstream 2508830 64360764 ~ 64363777 (-) False G1005628
TU1144127 other downstream 2508830 64361239 ~ 64363777 (-) True G1005628
TU1142905 other downstream 3070605 63801529 ~ 63802002 (-) True G1004487
TU1148585 other upstream 1096289 67971071 ~ 67971328 (-) True G1009720
TU1149378 other upstream 1812475 68687257 ~ 68687962 (-) False G1010443
TU1149899 other upstream 2241725 69116507 ~ 69119486 (-) True G1010922
TU1149998 other upstream 2430554 69305336 ~ 69306428 (-) True G1011014
TU1152021 other upstream 4009694 70884476 ~ 70890991 (-) True G1012814

Expression Profile