RNA id: XM_021621970.2


Basic Information

Item Value
RNA id XM_021621970.2
length 5278
RNA type mRNA
GC content 0.42
exon number 13
gene id LOC110536272
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 66946456 ~ 66990399 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAAGAAGGCGCACCGATTTGACAAAAATGGTCTGCTCGAACGCGCCCTGTCTGTGTGGGCTGTCAGATTAGCTAGAGTTTAATCCGTTGGGTTATGATCAGAACGCTAGTTATACCTGGGACAGGGTTCAATAACCACGAGGAAACGCAGGTTTGAAGGCGATAGATTTTATGAATGAGTAGCTAATCTAAGTAATCCAAGCCATTTGATGAGATGTCTGAATAACGTTAGCATTCAAATGGCTTGATAGCTAGTGATTTGTCAATCTGATAGACATTTAACgttagttagccagctaacaGTTAGTTAGCTCTTAAACTCTTAAAGTGGAAAATCGGATTTTCTACAAAATATTAAATAATTTTGATACGCGGAACAAGCAGTCCCGGGTTTGATGGTCCACTTCAGTTTGTGACATTTTGACAcggactagctagctagctcgttAGCAATCgagcatagctagctaactactgtagctaattAAATCAGTATTGTCGGAAAAAAACCAGTCTCTCTTCAGTCTCAACATAACGTCAAAACAGTGTAAGCAGCTAGCTAGTGCTagaggctagctagctaggtcaTCGAGCTTGGTCCTGAATCTTGAGGCAAGGCGAAATAATCATGTCTGGGAAAGACAAAGACAAGGAGAAAACCGTAGAAAAACAATCTACAACTGAGCGGCTCGTAAAAGCTGTGCCATACCCTCCACAGCAGCGTCTGTCTATGAAGGAGCTGTTTGAGGATGGCAAGCCCAACCCAGAGACCCTCCGAACCCACCTGGTGAAGGAGGGCCGGCTCGAGGAGGAAGTGGCCCTCCGGATCATCAACGACGGAGCCAACATTCTGCGACAGGAGAAATGCATGCTGGAGGTAGAGGCACCCATCACAGTGTGTGGAGATGTCCACGGACAGTTCTTTGACCTAATGAAGCTGTTTGAAGTTGGTGGCTTGCCCAGCAACACACGCTATCTCTTCCTCGGAGACTACGTAGACCGAGGCTACTTCAGTATCGAATGTGTGCTGTACCTCTGGTCACTCAAGATCAATCACCCGACCACACTCTTCCTCCTGCGAGGGAACCACGAGTGCCGGCACCTCACAGAGTacttcaccttcaaacaggaatGTAAGATTAAGTACTCTGAGCGCGTGTATGATGCCTGCATGGAGGCCTTTGACTGCCTGCCCCTAGCTGCTCTTCTCAACCAACAGTTCCTGTGTGTACACGGCGGTCTCTCCCCAGAAATCAACTGCCTAGACGACATTAGGAAATTAGACAGGTTTAAGGAGCCTCCAGCTTTCGGCCCCATGTGTGACCTGATCTGGGCTGACCCAGGAGAGGACTACGGCAGTGAAAAGACAGCAGAACACTTCAACCACAACTCAGTGCGAGGCTGCTCCTACTTTTTCAGTTACCCTGCTGTATGTGACTTTTTGATAAATAATAACTTGTTGTCTGTAATAAGAGCACACGAAGCACAGGATGCAGGGTATCGGATGTacagaaaaagccagactacaggcTTTCCTTCATTAATTACAATCTTCTCAGCACCAAATTACCTAGATGTGTACAACAACAAAGCTGCTGTATTAAAGTATGAGAACAATGTGATGAACATTCGGCAGTTCAACTGCTCCCCCCACCCCTACTGGCTGCCCAACTTTATGGACGTCTTCACGTGGTCCCTGCCATTTGTTGGAGAGAAAGTGACAGAGATGCTGGTGAACGTCCTGAACATCTGCTCTGATGATGAACTCATGTCGGAAGGAGACGACCTGTGTGAAGACGGTGGAATACCAGCGGCACGTAAAGAGGTGATCCGGAATAAGATCCGAGCCATTGGGAAGATGGCCAGAGTCTTCTCTGTTCTCAGggaggagagtgagagtgtgCTGACACTCAAAGGACTGACCCCGACTGGATCGCTGCCTCTAGGAGTGTTATCAGGCGGCAAACAGACCTTGCAGACTGCCATTCAAGGCTTCTCTCCCAAAAGGAAGATCAAGGACTTTGCAGAGGCACAGAGCCTGGACAAAGTCAACGAGAGAATGCCCCCACGCAAGGATGGCCAGCAGCCAGTCAACCCAAATGCCCCCAAGAATGGAACAGACTAGACCTGGAGAGAGACCCCCCTCTCATCCCCACCAGCCCCAGGCCATGGCCCTGTCTCATACACCCAAACTATCTTTGTCTCTTTTAACTCTGTCTTCtatctcgctcgctcgctccctcctcacgttctctctttctttctctctctgtctcattgagAATTTGCCCCCAGCTGGCCTATACGGTTGGACAGGCACAGAACGTGGGTAGAGAAGACGGCACAGCATTGGGAGAATGGTTTCAGCCACCACGCAGTAAAACCATATgaataaaaaacatattttatttattcaatTAAATTATTAGGTATGTCATAGCTACAATTTTATGAAATCATACATTTCTAAGATGTTTAAATGTCTAAGCATACTGACATTCTTATAACAATGGTAAATGTCAGAGTGAAAACCATGAAGACCATTTTGTAAATTTGAGTTGATGAATGAGGTAGTTATTGAAGGAGACCTTATTATCCGTTCTTAGTCAATTCAAGTTTTTCTATTTTGTGTTTCACAAGGGAAACGTTGAGTGTGTCTGCTCTCATACATTTATATTTAAATGATGTGTGTATTAACTGGAGAGAATTATTATGGGAACTAGATTTGAGACACCATTGCAGAAGATTATTTTATACCTCCAGTAGAAGTCCAGTGAAAACACCAGCTGTTTTTTTGTCCAATTTCTTTGATGAAACCACTGAATGCTGTTTAGATATTCTTTGATGAAACCACTGAATGCTGTTTAGATATTCTTTGGGTCAATGTGTTCCTCCTGTATTTTAAAGTTAGGGTAAACTGTTTAATCTTTCAACCTTGAGAAACTGCCCTGGTGCGGCAGGTAAGCCTAGAGATTTAAGATCATTGGCCCAGTCACTGGAAAGTCGCTGGCTcaaatccccaagccgactaggtgaaaaatctgtctgtgcccctgagcaaggcacttaaacctaattgctcctgtaagttgcttgggataagaacatctgctaaatgacatgtgAATGTACATTTTCCAAAGGATATGGAAAAAATTGTATATGGAAGAATTTATTCTAGTTTGCTACCATTATTGATGTGACGTGTCAAGGGATGGTGGTTAGTTTATCTGGTTTTATGTGTTCTGTATAGTGTTGGTGTTGCTTGCAGGCTGTCACCAACCAACATTTTTACCAGTGTGCTTAACTGTAAGCAGCTGGGGGGGTTATATAATATATTTAGATAATCTTCTGCAAAACCAAAGTCTGATTGAAAGGGgttatagacatacagtatgtattggTACATCTCCAAGAAGACTTGGTGGTGGTGGCACTGCTATTTGGTTAGCTTTTCTGGGACATTGAGCTGAGAGTGGCCAACTGTTCTTCAGAGTGATTTTTTGGATGGGTAAAGAAACATACCAATCTAATATCAAGGAAGAACAACCAGTGTCCTCTTAAGATGGAGGGGTAATATTTCCCATGGAGCAGATGGGGAAAAACGCTCATATATTGTCCCAAAATTAACTGAAACTCCATGTTAATTTTAGATAAGATTTGTggtataatactactaataatgaCACTGATTTCATATTGCTCTCTACACTACAGAAAGGATGTTTGGGGGGGTTTCTTGACTCCATCTGTTGATTTGATGCATATGTGTTAGATGACTCCAGTGTGATGAACGGAAGGGAAAGCTGGGCTCCAATCAAACGCTTTAGTTGCTAGCAGTTTGAGGAATGCTGTAGCCCGAAGAGTAGTAGATTGAGTCATTCTCAGTGATGCTGTGAAGATTGTTTTGGGTATTTCCTTTCTCTTTATCATGTATCCCACAGACTGACACAATTCTCAGTATCGGTGGTAGTGCAAAGTTGGGGGCCAACTACAGACTCTATACATTGATCATGCAGTAAAAAAAGAGAAGTCATTCCTGATGTTTCTTCTGTGTTCATTTGATTGAGTGTCTGAGTATTATGGTCTTGACACCTTTTTGTCTTTATCACCTCCATGGCAGGAATGAGGACTGGACACTTTTGTAACACCTGCTCCGAACCCTTTAATGATTGACTTCTTTAGGACTTGTGACTCGAACCGGTGCTTAGAGTTTTAGCcctagatttttttgggggggctaaaACTGCTTCTGACACTGTCACATGTAGTTATTCTATTGTCTTCAATCATTCAAGAAAAGCATTGATTTGTTATTCTCATGTGAATTTTCCcttttataatatattatacaGCTTTAAAACAAGTTGCTTTTAATGTGCCATGCCACTTCCTAAACAAACACCAACAcctgtgtgtgactggtggggGAGAATGGCCTGTTCTTGTGTTCAGTGGTCATGGAGAGATCCTGGAGCCTGTTTCAACTCAATGTGGGTCAGGTTCATTGAGTTGTCATTGCCTAGATGCTTATTTACAGCCCCTTTttgttagtaaaataaaacaatctaCTGTATTGTGGGTTCAGAAAATGGTCAAATGAtgctctttaaaaaataaaaaaaataaaaaaagatcccACATTCTCAACCGCTTAAAATGTTGGTTTGGTGTGAAGTTAGCTAGGATTTAGGGGGGAGTAGAGGCCCCATAGTAGGGCTGTATTCCTGACCTCTTGTCAGTTTAAATATTTCTCAGAATGTACAGAAATATTTGTCATTCAAAAGTCTTTAGCTGTTAAAAGGATGAAAATAATCCTTTCGTCAAGTACAGTACTTGTCATGCGAGGCCATGAAATCTTAATGTAGATGAATCACTTGAAAAATTAAATGTAAACACTAAGCGTTTCCCTGTCCTGGCTGTCTGAGTTTTTAGCTCTGAGGATTTTACGATGGTATGCCAGATGCTTTCTCACGTCAATGCTCTTGTTAAATTCTAGTCTCCCTTGATCTAAGTTATTCTACATGTTGCTAATATTTTCTCTACATGTCAGGTTGAATGGGTGGATGCATGTCATTGGGTTCTTCAGTGTTTAAATGTTGAGCCCTAAATGTTGTTAATAAATATCACAATTCTACATAAGCAGGACTGTCatgtcaacaaaaaaaatgacatttattttttttcatgCTTGAAATGTTAATCAGGTGGTACCTCTTGTACAATCAGAGATAAATAAAAAGTGGCAACAATTGTTACAGAAAATGCTGTTCCTCAA

Function

GO: NA

KEGG:

id description
K04348 PPP3C, CNA; serine/threonine-protein phosphatase 2B catalytic subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1146693 lncRNA upstream 71699 66874062 ~ 66874758 (+) True G1007981
TU1146653 lncRNA upstream 178238 66767992 ~ 66768219 (+) True G1007948
TU1146586 lncRNA upstream 199725 66719770 ~ 66746732 (+) True G1007884
TU1146582 lncRNA upstream 227843 66718337 ~ 66718614 (+) True G1007881
TU1146581 lncRNA upstream 229912 66716186 ~ 66716545 (+) True G1007880
TU1146798 lncRNA downstream 30118 67020517 ~ 67020717 (+) True G1008068
TU1146805 lncRNA downstream 40964 67031363 ~ 67031595 (+) True G1008075
TU1146807 lncRNA downstream 41234 67031633 ~ 67123650 (+) True G1008076
TU1146811 lncRNA downstream 49732 67040131 ~ 67041719 (+) True G1008080
TU1146872 lncRNA downstream 145436 67135835 ~ 67136357 (+) True G1008136
XM_021621965.2 mRNA upstream 2351 66915989 ~ 66944106 (+) True LOC110536271
XM_021621963.2 mRNA upstream 30518 66896753 ~ 66915939 (+) True LOC110536270
XM_036936340.1 mRNA upstream 77583 66833977 ~ 66868874 (+) True LOC110535095
XM_036936169.1 mRNA upstream 148227 66774136 ~ 66798230 (+) False LOC110536267
XM_021621973.2 mRNA downstream 56129 67046528 ~ 67047527 (+) True LOC110536274
LOC110535097 mRNA downstream 463236 67453635 ~ 67472779 (+) True LOC110535097
XM_021621998.2 mRNA downstream 1050654 68041053 ~ 68047964 (+) False LOC110536283
XM_021621999.2 mRNA downstream 1050655 68041054 ~ 68047964 (+) True LOC110536283
XM_021622001.2 mRNA downstream 1073749 68064148 ~ 68073099 (+) False LOC110536285
TU1146747 other upstream 64206 66881799 ~ 66882251 (+) True G1008017
TU1146661 other upstream 148240 66793890 ~ 66798217 (+) True LOC110536267
TU1146218 other upstream 533522 66412574 ~ 66412935 (+) True G1007556
TU1145712 other upstream 928884 66009581 ~ 66017573 (+) True G1007088
TU1145628 other upstream 1047089 65898748 ~ 65899368 (+) True G1007008
TU1149042 other downstream 1594269 68584668 ~ 68587042 (+) True LOC110536291
TU1149261 other downstream 1809801 68800200 ~ 68825000 (+) False LOC110535101
TU1150028 other downstream 2408319 69398718 ~ 69400234 (+) True LOC110536300
TU1150364 other downstream 2643102 69633501 ~ 69633876 (+) True G1011336
TU1150422 other downstream 2715035 69705434 ~ 69711333 (+) False sb:cb288

Expression Profile