RNA id: XM_021621973.2



Basic Information


Item Value
RNA id XM_021621973.2
length 1000
RNA type mRNA
GC content 0.48
exon number 1
gene id LOC110536274
representative True

Chromosome Information


Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 67046528 ~ 67047527 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CGGCGCTCACAGTGCTCACTCACTCCAATCCCTAGCGCACGAGCGAGTAGTGTTCCCTCCCTCATACAACCCCAGTCAAAGAAGTTGCTGGACCAGCTAAAAAGAGAGAGCCAACAAGATGTCTAACTACGTTGTATCCTCCGACTCCCGCCGTGTCAGTCCATCGGTCCACGGGAACAAATTCGACACGGCGCACCGCAAGAAGGCCGTTCCCAACATATTCGAGAATGTCAACCAGGACGCACTGATGAGGCTGTTCCAGAAAACGGGGGACATGAAagcggaggagagggtgaggagcaTCTTCTCCTTCGCCCAAGATCCAGCGGAGACAGCCAAAGCCCTGATGGCGCTCAAGCAGCGTAAGAAGGACAAGTTCCTCCAGATTGTAGGCATGGTTCGCCACATGCTGAAACTGCGTTGAACATTATCTTCTCGGCTCTACTGAACGAGTTGAATTGAAGTGCACTAGAATGACGCTGTGGTGGTTGGGCAGGTGACACCGACCTGTCACCTGGCAAGGAGAAGGAGAAGCAACGTCCTGGAATGGAGGAAGCCTAAATTCAAACCACTGTCTTCGAAGACAACAAAGTGTGACTATTCCACGAAGATGCGCTCCATGCGTAATAGCGGCATGCACTGGTTCGTATGGATACATCGTGCtggaagaagaaaggagagaatgGGAATACTGGGGGCTGTTGTCCCGAACAAAGAAACAGGGAGACATGACGCTCTCCCTGACTGACTATGCATTCTGTTGAATGCTCGGCTGTCAATGTGCACCTCATAGGTTCCTATTTGCTGGTGAATAATAACTGTAATAAGATAAACTGCCTGAAAATGCCTGTTCCTGTGAAAACACATGCCTTGTCTCTGTATCATTTTAACTTTGTGATACCACCAATTTATTTGTCAAAACATTTTATAGGACCACGATGACATGCATTTATGAAATGTCCTTTTGCAATTTCTTTAATAAATTATTAATGAAATATAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1146811 lncRNA upstream 4809 67040131 ~ 67041719 (+) True G1008080
TU1146805 lncRNA upstream 14933 67031363 ~ 67031595 (+) True G1008075
TU1146798 lncRNA upstream 25811 67020517 ~ 67020717 (+) True G1008068
TU1146693 lncRNA upstream 171770 66874062 ~ 66874758 (+) True G1007981
TU1146653 lncRNA upstream 278309 66767992 ~ 66768219 (+) True G1007948
TU1146872 lncRNA downstream 88308 67135835 ~ 67136357 (+) True G1008136
TU1146948 lncRNA downstream 160831 67208358 ~ 67209024 (+) True G1008204
TU1146976 lncRNA downstream 203093 67250620 ~ 67261001 (+) True G1008230
TU1146981 lncRNA downstream 210198 67257725 ~ 67258186 (+) True G1008233
TU1147599 lncRNA downstream 419551 67467078 ~ 67467300 (+) True G1008817
XM_021621968.2 mRNA upstream 56129 66946456 ~ 66990399 (+) False LOC110536272
XM_021621966.2 mRNA upstream 56129 66946457 ~ 66990399 (+) False LOC110536272
XM_021621967.2 mRNA upstream 56129 66946457 ~ 66990399 (+) False LOC110536272
XM_021621969.2 mRNA upstream 56129 66946457 ~ 66990399 (+) False LOC110536272
XM_021621970.2 mRNA upstream 56129 66946457 ~ 66990399 (+) True LOC110536272
LOC110535097 mRNA downstream 406108 67453635 ~ 67472779 (+) True LOC110535097
XM_021621998.2 mRNA downstream 993526 68041053 ~ 68047964 (+) False LOC110536283
XM_021621999.2 mRNA downstream 993527 68041054 ~ 68047964 (+) True LOC110536283
XM_021622001.2 mRNA downstream 1016621 68064148 ~ 68073099 (+) False LOC110536285
XM_021622003.2 mRNA downstream 1016621 68064148 ~ 68073099 (+) False LOC110536285
TU1146747 other upstream 164277 66881799 ~ 66882251 (+) True G1008017
TU1146661 other upstream 248311 66793890 ~ 66798217 (+) True LOC110536267
TU1146218 other upstream 633593 66412574 ~ 66412935 (+) True G1007556
TU1145712 other upstream 1028955 66009581 ~ 66017573 (+) True G1007088
TU1145628 other upstream 1147160 65898748 ~ 65899368 (+) True G1007008
TU1149042 other downstream 1537141 68584668 ~ 68587042 (+) True LOC110536291
TU1149261 other downstream 1752673 68800200 ~ 68825000 (+) False LOC110535101
TU1150028 other downstream 2351191 69398718 ~ 69400234 (+) True LOC110536300
TU1150364 other downstream 2585974 69633501 ~ 69633876 (+) True G1011336
TU1150422 other downstream 2657907 69705434 ~ 69711333 (+) False sb:cb288

Expression Profile