RNA id: LOC110535097



Basic Information


Item Value
RNA id LOC110535097
length 373
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC110535097
representative True

Chromosome Information


Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 67453635 ~ 67472779 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATgaagATTGATAAGCAGCAGTTTGTTGAGACTGAGGACATTGAACAACTTGTATGCTGTGACAGAGATGCTGGGAGGCTCGTCGCACCTGGAGGGCTGTCTGGCCTGCCTCACAGCTTACACAATCTTCCTCTGTATGGAGACACAGTACAAGAGGCTTTTGAAGAAGATTGCCAAATTCATCCAGGAGCAGAATGGTAAGATCTATGCCGCACGAGGTCTTCTCCTCATCGACCCTATTGAGAGAGGCCTCAGAGGTGTATCCTTCTACACCAAGCATTTTTATAGACATCAGAGCAACATGTCTATTTTTGAAAGGAGACTCagactgtcccaaatggcaccctactgtATTAAGGCTACTACTTTGTAa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1146976 lncRNA upstream 192634 67250620 ~ 67261001 (+) True G1008230
TU1146981 lncRNA upstream 195449 67257725 ~ 67258186 (+) True G1008233
TU1146948 lncRNA upstream 244611 67208358 ~ 67209024 (+) True G1008204
TU1146872 lncRNA upstream 317278 67135835 ~ 67136357 (+) True G1008136
TU1146807 lncRNA upstream 329985 67031633 ~ 67123650 (+) True G1008076
TU1147617 lncRNA downstream 9054 67481833 ~ 67483406 (+) True G1008834
TU1147634 lncRNA downstream 62007 67534786 ~ 67536885 (+) True G1008848
TU1147666 lncRNA downstream 76706 67549485 ~ 67552126 (+) True G1008877
TU1147688 lncRNA downstream 102240 67575019 ~ 67583895 (+) True G1008896
TU1147705 lncRNA downstream 130396 67603175 ~ 67603476 (+) True G1008905
XM_021621973.2 mRNA upstream 406108 67046528 ~ 67047527 (+) True LOC110536274
XM_021621968.2 mRNA upstream 463236 66946456 ~ 66990399 (+) False LOC110536272
XM_021621998.2 mRNA downstream 568274 68041053 ~ 68047964 (+) False LOC110536283
XM_021621999.2 mRNA downstream 568275 68041054 ~ 68047964 (+) True LOC110536283
XM_021622001.2 mRNA downstream 591369 68064148 ~ 68073099 (+) False LOC110536285
XM_021622003.2 mRNA downstream 591369 68064148 ~ 68073099 (+) False LOC110536285
XM_021622002.2 mRNA downstream 592766 68065545 ~ 68073099 (+) True LOC110536285
TU1146747 other upstream 571384 66881799 ~ 66882251 (+) True G1008017
TU1146661 other upstream 655418 66793890 ~ 66798217 (+) True LOC110536267
TU1146218 other upstream 1040700 66412574 ~ 66412935 (+) True G1007556
TU1145712 other upstream 1436062 66009581 ~ 66017573 (+) True G1007088
TU1145628 other upstream 1554267 65898748 ~ 65899368 (+) True G1007008
TU1149042 other downstream 1111889 68584668 ~ 68587042 (+) True LOC110536291
TU1149261 other downstream 1327421 68800200 ~ 68825000 (+) False LOC110535101
TU1150028 other downstream 1925939 69398718 ~ 69400234 (+) True LOC110536300
TU1150364 other downstream 2160722 69633501 ~ 69633876 (+) True G1011336
TU1150422 other downstream 2232655 69705434 ~ 69711333 (+) False sb:cb288

Expression Profile