RNA id: XM_021622002.2


Basic Information

Item Value
RNA id XM_021622002.2
length 1653
RNA type mRNA
GC content 0.41
exon number 7
gene id LOC110536285
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 68064148 ~ 68073099 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgaatttatttcagttgactgatttcacCATGtggactgtaactcagtaaaatcattgaaattgttccatgttgcatttatttttttgttcagcaTATTAACCTGAAGAAGGTGTACAAATCTACCCACATTCATCCCGCAGATGAATGAAATATTGTTATGATGTTGGTTTACTTACACAGATATTTCCTCAAAGACTAAATCAATATCAAGCTGTCTTGGTCTTAACTAACATCAGTGTAAAAACTATGATGAAAACCAGCCTGGTCCCCTGGGTAAATTTAAAGGAATTATTATACACAGGAAACCAGATAAAGCAGGCTCATTTCCTCATACTGTGTGACACTTGATGGCCTCACTACTCAGTCTCAGACAATTGTACCATGCTCCTTCTAATTTCTTTGGATGATCAAAATTCAAATCTGACTCAAAGGTGTCCTCACAGTTTTTAAACAATCTTTGCTGAGCATTTGTGTGGTATTGTATGTTGCTGTTTTCACTGATGGTTTCTGTGTTAAAGGCACGCTTTTCATTGATCTGTTGGCACACTGTGTGTTTATCTGtctcttgttttgttttttcaggTCTGAACGCACTTCTGGGAAATGGCTCAAAATTGTCTCAAGTGCTTGAAATACACCATGTGTGTGGTTAACTTCTTGTGCTTTATCTGTGGAACTGCAGGGTTTGGTTTTGGAGTGTTCATGATGATGAACTCTAAGGTGTCGTCTCTCATCCCATCCCTGTCCTCCCTGAACATTGCCAACATGATCTTCATCACCGGCATCATCATGACCTGTGTGTCCTTCCTGGGGTTCCTGGGGGCCCTGAAAGAGAACCGCTGCCTCCTTGTCACTTTTTCCATCCTGCTGTTCATTCTGATGTTGGTGGAGCTGACTGCAGCCTTTTTACTGCTTTTATATGAGAGCAATATTGACAGCTTCCTACAGAGGGATCTCACAGACAGTCTGGAGAAGTCCAGGGAATCAGCTAAAGGTGGGAATTCAACAATGAGCAAGGGCGACTGGGACATCATTCAGACCATGTTCCAGTGCTGTGGGGTCCATAACTCAAGTGACTGGAAGGATAAAGTGCCTGCGTCCTGCTGCTCCAAGACCCAATGTGACATCAATCAGCCGGGTTGTTACAATAAATTGAAGGCCTGGTTTGAGGGGAACTTCCTAGCCACTGGAGTTGCTGTGATTGTGCTCTGCATTATTGAGGTCCTGGGCATGTGTTTTTCCGTGACTCTGTTCTGCCATATAAGCCAGTCTGGACTCAGCTACAAATGATAAAAACAGTGTTTatttttatgtttgttttttgtaAAATAATCCCCTCTCGGTTCATGCTCCCTATGATGTTTCATTTCATTACATGCTAAAAGAAGGgcatatttacattttagtcatttagcagacactcttatccagagtgacttacaggagcaatttgctcaagagcacatcgaCAGAGTTTTCACCTAGTCAGTTTGTGGGTTCGAACCAGTGTCCTTTTTGTCTtcttaacagctaggctacctacctgcaCTTTTGAATGCTATATAATACTATTGATACTGTGACTGTACTGACACATTTTGTAAACAACCCAAATAATTCAATAAACATTGAGCTGTTATTTCATTTTAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06489 CD53, MOX44, TSPAN25; CD53 antigen

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1148012 lncRNA upstream 30058 68031740 ~ 68035487 (+) True G1009202
TU1147992 lncRNA upstream 61675 68002210 ~ 68003870 (+) False G1009186
TU1147974 lncRNA upstream 90237 67974953 ~ 67975308 (+) True G1009170
TU1147972 lncRNA upstream 93530 67971765 ~ 67972015 (+) True G1009168
TU1147971 lncRNA upstream 97277 67968034 ~ 67968268 (+) True G1009167
TU1148051 lncRNA downstream 15650 68088749 ~ 68091504 (+) False G1009233
TU1148052 lncRNA downstream 17921 68091020 ~ 68091504 (+) True G1009233
TU1148065 lncRNA downstream 26120 68099219 ~ 68101255 (+) True LOC118937378
TU1148070 lncRNA downstream 41354 68114453 ~ 68114925 (+) True G1009244
TU1148107 lncRNA downstream 114463 68187562 ~ 68187790 (+) True G1009280
XM_021621998.2 mRNA upstream 17581 68041053 ~ 68047964 (+) False LOC110536283
XM_021621999.2 mRNA upstream 17581 68041054 ~ 68047964 (+) True LOC110536283
LOC110535097 mRNA upstream 592766 67453635 ~ 67472779 (+) True LOC110535097
XM_021621973.2 mRNA upstream 1018018 67046528 ~ 67047527 (+) True LOC110536274
XM_021621970.2 mRNA upstream 1075146 66946457 ~ 66990399 (+) True LOC110536272
XR_005034725.1 mRNA downstream 26026 68099125 ~ 68101800 (+) False LOC118937378
XM_021622011.2 mRNA downstream 213959 68287058 ~ 68361204 (+) False LOC110536289
XM_021622012.2 mRNA downstream 213959 68287058 ~ 68361204 (+) False LOC110536289
XM_036936188.1 mRNA downstream 213959 68287058 ~ 68361204 (+) True LOC110536289
XM_036936189.1 mRNA downstream 291381 68364480 ~ 68413213 (+) False LOC110535098
TU1146747 other upstream 1183294 66881799 ~ 66882251 (+) True G1008017
TU1146661 other upstream 1267328 66793890 ~ 66798217 (+) True LOC110536267
TU1146218 other upstream 1652610 66412574 ~ 66412935 (+) True G1007556
TU1145712 other upstream 2047972 66009581 ~ 66017573 (+) True G1007088
TU1145628 other upstream 2166177 65898748 ~ 65899368 (+) True G1007008
TU1149042 other downstream 511569 68584668 ~ 68587042 (+) True LOC110536291
TU1149261 other downstream 727101 68800200 ~ 68825000 (+) False LOC110535101
TU1150028 other downstream 1325619 69398718 ~ 69400234 (+) True LOC110536300
TU1150364 other downstream 1560402 69633501 ~ 69633876 (+) True G1011336
TU1150422 other downstream 1632335 69705434 ~ 69711333 (+) False sb:cb288

Expression Profile