RNA id: XM_036936189.1


Basic Information

Item Value
RNA id XM_036936189.1
length 1964
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC110535098
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 68364480 ~ 68413213 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAAGACTGTTTCACCCCCGCTCCGCCGTGCAACCGCTTTCACACCCTGAGTGGCGAGTGCGTTGGTTGGAGTCTGAAGAGCCAAACTGCATACGGAAACAGTGCATAGCGCACCGAATTCGGATCCCAGTGTATCCTACGTAGCTAACGCAGTTCAAATATATCACTGTGTAGAATATAATCAATACATTTCTGGGGGAACACTTTACTCTTTATAAACGAATTGGACTGTTGTTATAACGATCTTCTGGATAAAGACTATAACTACTGGGTATTGCACTGACTGGCGGCCATTGCATTTCCCCCCATCCTCAAGATGCATATGAATAGCTTATTAAATCAATGGACAGACATCACTCCCCACTCCAGGATGTGTGACTGTGACGTGGATGTGTCCTCAGAGCCCACCAGCCCCAGGCTCTATGGTGAGTCCTCTGACAAATACTACCATGTGGACCGCTGGCAGAAGCTCCGCACCGCCGTCCGCAAGCTGGAGTTCTGGGAGAACTTTACCGCCGAGCTCATCGGGAGCGGCTTCTTCTCCAAAGTCTACAAGGTGATTCATAGTACGAGCCATAAGGTGATGGTGGTGAAGATCTATAAGAATGATGTGGACCAGGACAGCATCGTGCGTGAGATCAGCCTACTGCAAAAACTCTCCCATCCCAACATAGTCAGGTATCTGGGGATATGTGTGAAGGAAGATAAACTCTACCCTATTTTAGAGTATGTTAGTGGAGGATGTCTGGAGGAACTGTTGGCCAGGAAGGATGTGTCTCTGTGCTGGAGGGAGAAGGTGGACCTGGCCTGTgacatcaccagaggaatgatCTACCTGCATTACAAGAACATCTACCACAGGGACCTCAACTCTaagAACTGTCTGATCCGTGTGACGGCGCGGGGCAGGGAGGCCCTAGTCACAGACTTTGGCCTGGCCAGAGAGGTGGTGGAGCTGCCGGTTAAAGACCCAGAGAGGAAGCTCTCTCTGGTGGGATCTGCCTTCTGGATGGCCCCGGAGATGCTGCGTGGGGAACCCTACGATCGCAAGGTGGATGTATTTTCCTTTGGAATTATGCTCTGTGAAATACTGGCAAGGATCCCTGCTGACCCAGAGATTCTACCAAGAACCCAGgaCTATGGCCTGGATGTGAATGCATTTAGGGAGCTGGTGGGCGGGTGTCCTCAGCGGGTGTTGGAGCTGGCAGCCAGCTGCTGTCTGATGGAGTCCTTCAGGAGACCAGCATTCACAGAGCTGCTGGATGAACTGGGGGAGATCGCTGAGACTCTGGAACCGCCCCCTAACCCGCCCCCTAACTCAGAGCTGACTACTGGGTGAGCTGCCTGGGTTGGCCGAAGCCCCACCCACCCATCTATCCTGAGGACTGGAGGATTTGGGATTTGTATATGGGctcaatcccaaatggcaccttattccttatatagtgtactatgTTTTACCAGAGCCttgtgctctggtcaaaagtagtgcactatatagggaatagggtaccatttgggaagcaacAATAGACAGTTGCACAGGGGCAGGGGCACAACACTTCACCAGGATGACCTCTCTACAGGGGCTGACCTCTCTGTTTGTGCCTGCCTACACTGCACCTAAACTGCACCTACAGATGTGTCGGGGGGTAGCTCCACAGTTTTCAAGTGAGACCCTGGTGGAATAATGGATGGAATAGACAGTATGTATCTTGAAGAGAGGGTTTCTTTGGAAGCTTTATTTGACCAGTTCACACACTTTGTGTACAGGTGATAGAAGTTGGGCATAATTTTGCTTAACTTTTTGTCTTTCCTTAACTTACATTTTCTTAATCTTACTCTCATAAACTGCTTTTTTGTTtaaatttgttgttgttgttgttgttaatgtttATGACAGTGTTTCGTGATGTaactgatgatgatgaggataaacatgatgatgaggaggatggtgatgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1148814 lncRNA upstream 2180 68362021 ~ 68362300 (+) True G1009936
TU1148107 lncRNA upstream 176690 68187562 ~ 68187790 (+) True G1009280
TU1148070 lncRNA upstream 249555 68114453 ~ 68114925 (+) True G1009244
TU1148065 lncRNA upstream 263225 68099219 ~ 68101255 (+) True LOC118937378
TU1148051 lncRNA upstream 272976 68088749 ~ 68091504 (+) False G1009233
TU1148851 lncRNA downstream 3393 68416606 ~ 68416817 (+) True G1009970
TU1148854 lncRNA downstream 6350 68419563 ~ 68419767 (+) True G1009973
TU1148867 lncRNA downstream 19389 68432602 ~ 68432919 (+) True G1009983
TU1148880 lncRNA downstream 30436 68443649 ~ 68445074 (+) False G1009990
TU1148874 lncRNA downstream 32011 68445224 ~ 68447274 (+) True G1009990
XM_021622011.2 mRNA upstream 3276 68287058 ~ 68361204 (+) False LOC110536289
XM_021622012.2 mRNA upstream 3276 68287058 ~ 68361204 (+) False LOC110536289
XM_036936188.1 mRNA upstream 3276 68287058 ~ 68361204 (+) True LOC110536289
XR_005034725.1 mRNA upstream 262680 68099125 ~ 68101800 (+) False LOC118937378
XM_021622001.2 mRNA upstream 291381 68064148 ~ 68073099 (+) False LOC110536285
XM_021622014.2 mRNA downstream 171414 68584627 ~ 68587134 (+) False LOC110536291
XM_021622015.2 mRNA downstream 177496 68590709 ~ 68611500 (+) True LOC110536292
XR_005034824.1 mRNA downstream 248537 68661750 ~ 68661802 (+) True LOC118937485
XM_036936202.1 mRNA downstream 274008 68687221 ~ 68847333 (+) False LOC110535101
XM_036936201.1 mRNA downstream 274009 68687222 ~ 68847333 (+) False LOC110535101
TU1146747 other upstream 1482229 66881799 ~ 66882251 (+) True G1008017
TU1146661 other upstream 1566263 66793890 ~ 66798217 (+) True LOC110536267
TU1146218 other upstream 1951545 66412574 ~ 66412935 (+) True G1007556
TU1145712 other upstream 2346907 66009581 ~ 66017573 (+) True G1007088
TU1145628 other upstream 2465112 65898748 ~ 65899368 (+) True G1007008
TU1149042 other downstream 171455 68584668 ~ 68587042 (+) True LOC110536291
TU1149261 other downstream 386987 68800200 ~ 68825000 (+) False LOC110535101
TU1150028 other downstream 985505 69398718 ~ 69400234 (+) True LOC110536300
TU1150364 other downstream 1220288 69633501 ~ 69633876 (+) True G1011336
TU1150422 other downstream 1292221 69705434 ~ 69711333 (+) False sb:cb288

Expression Profile