RNA id: XM_036936212.1


Basic Information

Item Value
RNA id XM_036936212.1
length 8085
RNA type mRNA
GC content 0.49
exon number 14
gene id LOC110536299
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 69306948 ~ 69395042 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCTTGGATAAGACCCCGCCTTTAAACTCAAACACTAACAAACTTCAGAGTATTTTCGTCTTTTAGtatcccccccaccaccacacactggGGCCCCGCCTTCTCGCTCCGGAATGGCTTCACAAAGGATTTGCAGACGTTTGGGAATTCCGCCTATAGCTCCTTTTTTTACCGACACTTGTGCGCTGGAATCGGCCCAGGATGACCAAGGATCCCACCCATCTCGGTTAATTTGACAACACAAAGGACTTCGCCGAACCCAAAAGAAACCGCCTACTATTCCAAATAAGGGTCGTCTCTCCATGTACGGCAAACAATCGGCTGGAGTGCCCTTTTCTCTTCCGTATCCCGTTTATATGATCGGGGAGACTGTGCTGCAAGTTACAGCGGTGCAATCATGGCGGAGCGAGTCCAGCAGCCCCCGGCCAAGCGGCTCTGCTGCAGGCCCGGCTACAACCCGGCATGCAGACAGGGGCAGCGGGCTGGAGGAGTACTGTGTGGCGGTCCGGGGTCCGCTCCAGGGGGATCGGGAAAAACACACAACCCCGAATCGCTGCTAGACATAGCGGCGCGGAGAGTCGCGGAGAAGTGGCCCTTCCAACGGGTGGAGGAACGGTTCGAACGTATTCCAGAACCCGTCCAGAGAAGGATCGTGTACTGGTCCTTTCCGAGGAGCGAAAAGGAGATCTGCATGTATTCTTCGTTCAACGccggaggagaagagagtggacCTAGCGGGGAAAATCATGAAGAGACTCAGCTGCCTTTCCTACGGGGTGTCACTCTGCTGGAGGGCGGCTGGGTGGACAACGTACTGCAAGTCGGGTTTCATCTGAGTGGCACGGTAACAGACCCGGCCACGTCCTCTCAGCCTGAGATAATCTGCAGCGTGAGCGTCAGCTTCGACCGCTGTAAGATCACCGCAGTAACCTGTAGCTGCGGCAACAAGGACATCTTCTACTGCGCCCACGTTGTAGCGCTGGCCCTGTACCGCGTACGGAAGCCCGATCAGGTCAAACTGCACCTGCCCATCTCAGAGACGCTGTTCCAGATGAGCCGAGATCAGCTGCAGAAGTTTGTCCAGTACCTGATATCAGTGCATCATACGGAGGTGTTGCCCACCGCACAGAAACTGGCTGATGAGATACTGTCAACTAACTCCGAGATCAACCAGgtccacgGGGCCCCGGATCCCACGGCAGGAGCCAGTGTAGATGATGAGAACTGTTGGCACTTGGATGAGGAGCAGGTCCAGGAGCAGGTGAAACTCTTCCTCTCTCAGGGAGGATACCACGCCTCTGGGAAACAACTCAACCTGCTGTTCAGtaagGTGAGGGAGATGCTTTGTATGCGTGACTCCAACGGTGCCAGGATGTTAACACTGATCACAGAACAGTTCATGGCCGACCCTCGCCTGGCACTGTGGAGACAGCAGGGCACCACCATGACCGACAAGTACAGACAGCTCTGGGATGAACTAGgtgctcTGTGGATGTGCATCGTGCTAAACCCTCACTGTAAGACGGAGCAGAAGTGTTGGTGGCTAAAACAGCTGAGGAGGTGGAACAGCGTGGACGTGTGTCCCTGGGAGGACGGTAACCATGGCCACGATCTGCCCAACCTCACCCACTCCCTGCCTCAGGGTGCCCATGGCAACCAAGAGTTGCGTCCCCACAGGACAGTGTTCACGCGGGCCATCGAGGCATGTGACCTCCATTGGCAGGACCGTCACCTGCAGCACATTATCGCCAGTGGCCTCTACGCCAACTATTGTTACCACGACAACCAGGACGGCTCGCTCTTCGACACACGCGGATGGCCCATGtggcacgAACACGTTCCGACGGCGTGTGCTCGGGTGGACGCCCTGCGTTCCCATGGTTACCCCCGTGAAGCGCTGCGATTGGCCATTGCCGTGGTGAATACACTACGGCGGCAGCAGCAGAGGCAGCTGGAGCATTTCCGCAGACATAAGAAAGAGCTGCTCCATAAAGGTATCACCTCCATAACCAACATGGAGGGCTGGGTGGGTCACCCTCTGGATCCCATCGGCACCCTGTTCAGCACCCTCACTGAGACGGGACGGGGGGCAGAGGAGGGGGCCAACACATGCCTTGACCTTTCAGacTGTTCCAGCGTGGTGAGTCGTGCGGAGCTGCAGCGTTTTCCAGTGCAGCGTTTGCTAGGCGAGGGGGAATCGTATGTGGCGCTGGCTGTGGAGACTGCTCTGATTGGCTTAGGCCAGCAGAGGGTGATGCCTGACGGGCTGTATGCCCAGGAGAAGGTGTGTCGCAACGAAGAGCAGCTATTAGCCAAGCTGCAGGAAGTGGAGCTGGATGACATGCTGGTCAAGATCTTCCGCAAGCAAGCCGTCTTCCTGTTAGAGAGTGGGCCGTACAGCGGCCACGGAGAGATTGTCCACAGAGAGAGTGTTCCCATGCACACCTTCACCCGCTacctcttcacctctctcctACCTCACGACGCTGAACTGGCGTACAAGATTGCACTCAGAGCCATGCGGTTGCCTGTGTTGGAGTCCACAGCCTCGTCAGGTGACCTGTCGCGACCCCATCACATGGTGTCTGTGGTCCCTAACCGTTACCCTCGCTGGTTCACACTCACCCACATAGAGTCCCAGCAGTGTGAACTGGCCTCCACCATGCTCACTGCAGCCAAagGTGATAGTCGTAAGCTGGAGACTGTACTAGAGTCCATCCAGAAGAACATCCATTCCTCATCTCACATCTTTAAACTGGGCCAGGATGCCTTCAAGATTGCTACTCTGATGGACAGCCTGCCAGACATCACACTGCTCAAAGTCTCACTGGAGCTGGggctgcagGTGATGAGGATAACCCTGTCTACGTTgaactggaggaggagggagatggtacGGTGGTTAGTTACCTGTGCCACTGAAGTAGgggtgtATGCGTTGGACAGCATCATGCAGAGTTGGTTCACCCTCTTCACCCCGACCGAGGCCACCAGCATCGTGGCCACCACTGTCATGTCCAACACCACCATCGTCCGGCTGCACCTGGACTGTCACCAGCAGGAGAACCTGGCCTCCTCCGCCCGGACCCTGGCCCTGCAGTGTGCCATGAAGGACCCCCAGAACTGTGCCCTCTCCGCCCTCACGCTCTGCGAGAAGGACCACATAGCCTTCGAGACAGCCTACCAGATCGTTCTGGACGCGGCCGCCACGGGGATGAGCTACACACAGCTGTTCACGATAGCCAGGTACATGGAGCACAGGGGGTACCCTATGAGGGCGTACAAGCTAGCCACGCTAGCCATGGCTCATCTAAACCTCAGCTACAACCAGGATACCCACCCAGCCATCAACGACGTGCTGTGGGCCTGCGCTCTGAGTCACTCGCTGGGAAAGAACGAGCTGGCCGCCGTCATCCCCCTGGTGGTGAAGAGTGTGAAGTGTGCCACGGTGCTGTCAGATATTTTGCGGCGGTGCACACTGACCACGCCGGGGCTGGTGTCCGCACTGCACAGCCGTAGGAACTCTGGGAAGCTGATGTCACTGGACAAAGCTCCTCTCAGGCAGCTGCTGGACGCTACCATCGGGGCCTACATCAACACCACGCACTCTCGCCTCACGCACATCAGCCCACGCCACTACAGCGAGTTCATAGAGTTCCTGGGGAAGACCCGGGAGACGTTCCTCATGGCCCAAGATGGACACATCCAGTTCACACAGTTCATAGACAACCTCAAACAGATCTATAAGGGAAAGAAGAAACTCATGATGCTGGTGAGGGAGAGGTTCGGCTGACCAGGGTCGGCCCCTAGGGACAGGTTCGGCTGACCAGGGTCGGCCCCTAGGGACAGGTTCGGCTGACCAGGGTCGGCCCCTAGGGACAGGTTCGGCTGACCAGGGTCGGCCCCTAGGGACAGGTTCGGCTGACCAGGGTCGGCCCCTAGGGACAGGTTCGGCTGACCAGGGTCGGCCCCTAGGGACAGGTTCGGCTGACCAGGGTCGGCCCCGTGGGAGAGGTTCGGCTGACCAGGGTCGGCCCCGAGGGAGAGGTTCGGCTGACCAGGGTCGGCCCCGAGGGAGAGGTTCGGCTGACCAGGGTCGGCCCCGAGGGAGAGGTTCGGCTGACCAGGGTCGGCCCCGAGGGGGAGGTTCGGCTGACCAGGGTCGGCCCCGAGGGGGAGGTTCGGCTGACCAGGGTCGGCCCCGAGGGGGAGGTTCGGCTGACCAGGGTCGGCCCCGAGGGGGAGGTTCGGCTGACCAGGGTCGGCTCCTAGTACTTTTATATTAACTTGAGTCTGCCTTTTGGACTTAAACATGGACAAGTAAAGAGTTGGAGGACAAAGCAAAAGAAGAAGGAAAAAACTATTTCCAGAGCCACACAGTATTATCATTCTTGCTGTTATTGTTACAAAcattattaccattattattattactgtgtaCAATACTATGTGTGTTTTATTTTCAGAAGAAGAAATGTCACGTTGTGAATGTTGCGTGTGTTTTTCCATGTGTGTGCGAGAGGAAAAAGCAGATAACAGAAACGTTTATTATTATTAGCATCCCCCTGTTTTATATCTTGGTTTTATACTGAGTATATGTCAAGTGGCTTAAAGTCCCTTGTGCGAAAGTGCTTGTATAAAAACACATTGGCAGCCTCAAAGAGACACTATGGCTTTAAAACCACACAGACCTGACTATTGGAAGCACTGCACAGCTCGGCTCCGTGAGAAAACCACCATTTAGTATTTCTGTTGACTCGCCACTTGTGTTTTCTCTGTGTCATAGGTATTAGTtagattctagttttggaaaaATAGTCTTAACAGACTGGTGTTGTTTCAGATGCAGTAATCATAACTATCTGTGTTAGATTAAGGACAACAATGCAGGACTACAGTAATGGCACATGGGCCATAAGATGAGGATATGGAGTATTATCAAGAGTACCAGCATTTGATGTATTATGCCAGAAATATCCCACACTGTAACAACAAATCATGTTTACAGTAAAGTTTAGAGTAATGTACCGTTAAACAAAAGTTTCTTTGGAATTTATGGTAACCttttttacagtaacttacaggTAACTAACTGGCTGccagtaagttactgtaaaaacaacaggatatatatatatatttttacagtgCACAATGTACTTAAAACCAACAAACCTGTAATTGTGGGTTAGTTACTGGTTCAAGTCTTAGGATGAACAGTTGCTGGAGACTAGCCGGGTTACCTGACTGTTTCTGTATTCACAAGACTAACCTTCACAAGACTAGCCAGGTTACCTGACTGTTTCTGTATTCACAAGACTAACCTTCACAAGACTAGCTGGGTTACCTGACTGTTTATGTATTCACAAGACTAACCTTCACAAGACTAGCCAGGTTACCTGACTGTTTATGTATTAACAAGACTAACCTTCACAAGACTAGCCGGGTTACCTGACTGTTTCTGTATTCACAAGACTAACCTTCACAAGACTAGCCGGGTTACCTGACTGTTTCTGTATTCACAAGACTAACCTTCACAAGACTAGCCGGGTTACCTGACTGTTTATGTATTCACAAGACTAACCTTCACAAGACTAGCCAGGTTACCTGACTGTTTCTGTATTCACAAGACTAACCTTCACAAGACTAGCCGGGTTACCTGACTGTTTATGTATTCACAAAACTAACCTTCACAAGACTAGCCAGGTTACCTGACTGTTTCTGTATTCACAAGACTAACCTTCACAAGACTAGCCAGGTTACCTGACTGTTTCTGTATTCACAAGACTAACCTTCACAAGACTAGCCGGGTTACCTGACTGTTTATGTATTAACAAGACTAACCTTCACAAGACTAGCCGGGTTACCTGACTGTGTATGTATTCACAAGACTAACCTTCACAAGACTAGCCGGGTTACCTGACTGTTTCTGTATTCACAAGACTAACCTTCACAAGACTAGCCGGGTTACCTGACTGTTTATGTATTCACAAGACTAACCTTCACAAGACTAGCCGGGTTACCTGACTGTTTATGTATTCACAAGACTAGCCGGGTTACCTGACTGTTTCTGTATTCACAAGACTAACCTTCACAAGACTAGCCGGGTTACCTGACTGTTTCTGTATTCACAAGACTAACCTTCACAAGACTAGCCGGGTTACCTGACTGTTTATGTATTCACAAGACTAACCTTCACAAGACTAGCCGGGTTACCTGACTGTTTCTGTATTCACAAGACTAACCTTCACAAGACTAGCCGGGTTACCTGACTGTTTATGTATTCACAAAACTAACCTGGTGACCTGGCTGTTTCTGTGTTCACAAGAATACAGGCTGGGTAACTAATTACAGTGCCAAAGTTACCAGGGTTCTagttgtacagatgtaggatcttaattggatCACCTGCAATACAGGAAATGTTTTGCTTGTATTTTGAGGTTTAAAGTGGTTTAATTTCCACTTTTCCACAATTtctgacttgattttcccttatgaaaaatgtatcaacccctacaaaaatgtcaatttattttatacatagttcaaatttcctgttgctgcaggattattttcctgctgtagcaaacaggCTCAAATTAGGATCACACATCTGTAGAATCGGTGAGTGTAGCTCCAGAATGGGCCAGTGTCAATACTTCTGTGCATGTGGAACCATAGGATAATTAGAATTCCATTATAATACAGTTTTAATAGGCCTATTCTGTGTATAACCTTCAGCAACTGTCAAAAGATGTTCTCAGGGATTTCTCTAAAACTAACAGGAAGAAGGAATGAGTGCAGGAAACAATGATACGAGCAAGCATGTATTGTACTGTGTATATCTACAATAGTGTAAGTCTGAATATGGAGGATTCAAAAGTATATGTTAACTAATTTATACAGAGTATTCTATGTAATGTGAAATACTTGAAGCCGCTGTAGCTTGCTCTTTTTCTCTTAGTGTTTTTtctttcaattacatttttttttttaccacagaaCACATCACATTGGCCTTGCTAATGGAGGGTTACTGTAGGCTCACAAGGGTAGTGTCAGTACTAAGACATTGGTTCAGATTATTGAACTGCTATCAACAGTTTGATTTGGTGTctattcaaggtattggagcacAGTGAAAATATTATCGTGTTCTCTCAAGGGTTACTTTTCACAAAGAAACAGATTTATGTATTTGACTGATGTACAGTGTTCCATTGAAATGTCATATGAAAACACGAGCATTGATTTTTCATTACGTGGCATCATAACATTGATCAGCTGTTGAGAAATGACCAACATCCAGTTGTGTATAACTCTGGTCCTCGAAGGCCACGGGGTCTGCTGGTTCTCTTCCTTATCTGGTAATCCCAGACTTTTTAGAGTTATATCTGGCTAATCAGTGGTGTGAAAGCTAGGTCAGTCAGTGATACTAACTGATCTATTAAAACCAGCAGGGCTGTCACCCTTCAGGACAAGAGTTCCGCTGCTCCGCTGAAATGTCCGCTTGCCTCTGAACACGCCACAGAccagaccagtgtgtgtgtcttcctgtacGAGGTCCGGCTATTGTACTAATAACTTGTcttgtttctttatttttctgtttttttgttgaagTGCTTTCTCTTTTGTTCTGTAAAGAATGAACAGCCTTCTCTCTTGCCTTGTTTTGAAGTAACCGAACAGGAGTTCTAACAACCAAACACGTTCCAAGAAGTGAAAGCCAAGCCACCTTGGTCCCAGCTTTAGTGTCCTTAATTAGTAACTGAATGGCTCTGTAAACACTGTGCTTTTAACGAAGCATTTCCTCGTGTGTTTGGTGGAAAACGTTGTCCTGTGTGTCTCGTCCTCTAATGAGTGgatttcctctttctctctagctgattttttttcttctgttcgTGTAGGAAATGGAATCTTCTGTTTTCACACTTTATTTATTGTAATGATTCATGTATACATGCTTATGAAATTAAGATTTGATTCACCGATATCAATTTATTTATGTAACTAAAATCACTGTTTTATaatcttttttttgtttgttttaattaaagttagttttttttaaaggta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1149939 lncRNA downstream 32320 69231231 ~ 69274628 (-) True G1010960
TU1149926 lncRNA downstream 97758 69208976 ~ 69209190 (-) True G1010949
TU1149895 lncRNA downstream 196591 69109894 ~ 69110357 (-) True G1010918
TU1149823 lncRNA downstream 204748 69099683 ~ 69102200 (-) True G1010850
TU1149838 lncRNA downstream 283816 69022933 ~ 69023132 (-) True G1010864
TU1150267 lncRNA upstream 58902 69453943 ~ 69455295 (-) True G1011248
TU1150269 lncRNA upstream 62943 69457984 ~ 69552491 (-) True G1011250
TU1150262 lncRNA upstream 92434 69487475 ~ 69488426 (-) True G1011243
TU1150255 lncRNA upstream 106864 69501905 ~ 69520276 (-) False LOC110536304
TU1150256 lncRNA upstream 106864 69501905 ~ 69520276 (-) True LOC110536304
XM_021622019.2 mRNA downstream 36498 69268300 ~ 69270450 (-) True LOC110536298
XM_036936206.1 mRNA downstream 119689 69111906 ~ 69187259 (-) True LOC110535102
XM_036936203.1 mRNA downstream 119690 69104104 ~ 69187258 (-) False LOC110535102
XM_036936204.1 mRNA downstream 119690 69104104 ~ 69187258 (-) False LOC110535102
XM_036936205.1 mRNA downstream 138017 69104104 ~ 69168931 (-) False LOC110535102
XR_002475399.2 mRNA upstream 5509 69400550 ~ 69404206 (-) True LOC110536301
XR_005034729.1 mRNA upstream 78895 69473936 ~ 69478948 (-) True LOC118937381
XR_002475401.2 mRNA upstream 106856 69501897 ~ 69520334 (-) False LOC110536304
XM_021622029.2 mRNA upstream 126072 69521113 ~ 69532109 (-) True LOC110536305
XM_021622030.2 mRNA upstream 138743 69533784 ~ 69544398 (-) False c11h5orf34
TU1149998 other downstream 520 69305336 ~ 69306428 (-) True G1011014
TU1149899 other downstream 187462 69116507 ~ 69119486 (-) True G1010922
TU1149378 other downstream 618986 68687257 ~ 68687962 (-) False G1010443
TU1148585 other downstream 1335620 67971071 ~ 67971328 (-) True G1009720
TU1146168 other downstream 2933999 66372642 ~ 66372949 (-) True G1007506
TU1152021 other upstream 1489435 70884476 ~ 70890991 (-) True G1012814
TU1152952 other upstream 2102267 71497308 ~ 71515434 (-) True G1013669
TU1153293 other upstream 2601040 71996081 ~ 71996688 (-) True G1013960
TU1153754 other upstream 2964244 72359285 ~ 72359505 (-) True G1014411
TU1154017 other upstream 3051613 72446654 ~ 72449340 (-) True G1014639