RNA id: XR_002475401.2


Basic Information

Item Value
RNA id XR_002475401.2
length 2325
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC110536304
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 69501897 ~ 69520334 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAACTCAATCCCCTATTCTCTCACGAGAATTCACCAAGTTTCCGCTGTTGTGTATATGTCTGGAAACATGGCGGCACGCATCCGTGGCCGCTCTATCCGAAGTCTTCGGATGCGAGGTGGGTAGCCATACGATGTCCCTGTTGTCTTGGACAGGTCGGAATGACAGCGGGGAAGATCTGGAGAAGAGAACCTTCTGACAACTTGTGTGAAATCCTTCAAAATGTCGTCAAGCCACACGGCATCACCAACATGCAGAAACTGGGCCACCTGAACAATTTCATAAAGgATAAAGGAGAAGTTTCCCTATGCGTTTGATATGTGTTTGTACTCTGAGGTGTCTCACTTGCTGGCCCACTGTatgttccgcctgccatctcgacGCTTCATACAGGAACTCTTTCAGGATGTACACTTCATACCAATGTACGAGGAAGCAGAAGCGATCCTGTCGATGCCATCAAAGCCTGTCGGAGTGGATATAGACTGTCCCACAGAATCCTGATCATTGTCCccatcctcttccccctctccctgtttAGACGACCCCCCTCCCTCCAACCTTCACATAGAGATAACGACAGCAATGGAGTGGGAGAATAGAGGGAGCGGCAGgtaacctggtggttagagcattggactattaaccaaaaggttgctagtttgaatccccgagctgacaaggtcaaaatctgtctttctgcccctgaacaaggcagttaacccactgttcttaggccgtcattgaaaataggaatttgttcttaactgacttgcctagttaaataaaggtaaaacaaaaaaaagggaTGAAGAGTATGGGGGACGGGGCTAAAACAGGATGGGATACCCAGAGTATGTTGCTGAAGTTTAGGATGGAGGGAGCACggatgagaggagtggaggatCATGGATGTTAAAGAacaagaaagaggaaaagggtTTCCCTCCCATCGCTTGACAAAGAGGAGATGGACTGTCTGAGAACAAATGAAACCTGACACACCTAGTCCTGTTCCTGCCCATCTCCAACAGGGGGAGCAGTTTTCCCAAAATAGTATTTTCAGAAGCTCAACCCGACGACGCTCAACCCGGTGACACACAACCCTGAGCAACAGACTACTTATCACATCCCATTGACTTAAACACACATTGGATGAATCATGACGAAGTCTGTCTGTTTTCAGTGTACCTTTGCTCTGGTGCATGCTGATATGAAATGAAAAGGGGATGTTTAGTCCATCCCAGTCAGTGCTGGTcccatcctcttctccttccATATGGAAACACTACAGAAGGCTCCAGGAGCCTCCCTCATAGTCATACCCTCAGTCTGTTTCTGCTGTGACATCATGAGTTTATCAATTTCAACTCTACTCAAAAGACTCATTCTAGTTCAAATAACTGTTGTTCTATTCATTTCTACAGACAATCAAACATCAGTagtgttttttaaaattatttaacCATCACTCTCTTCCCATCCGGACACATAAAACATAACTTCTGTGCCTTGCTGTCTGTCAAGCCTTCCTCTGTCTCTGACCCTGGTCTGGAAACACACTGTTGTTGACATTGCCAACAGCTGTTTTCTCTCACCTTTCATTGGTTATTTTTTATGTTAAACTGCCATGAAATATGCTGGTACGTGATGTGTAGTTTATTGTTTCATTGATTGTACATATTCAAAGAGAGAGAAGCTACAGTACCTAGTTGCCCTTCCCAAACCCTACCTCTGTGCTTTGTTCTAACTGCATGTGCAAACAGCATATTGAAATATTACATCATCATTGTCACTTTTCTTCTGGAAATTATTAATGTATTTCTTCCAAATGCTTCTAATACTTTGATTGTCTTAAATCATAATAGGTTGTCATCACTGCTTTACAAACTGGGGAAAGTAACGGTCCCTAAGTTATTTTCACAATGCAACATTGCTGTTTATCATTGGCTGAGATGAGAGGGACAGGTAGATGTGATCGTTTATGGATTGGCATAAGATTTTCATGGGGAAAAGTTTCATTTTCTATTAGTTTGTTTTGCTATTATGCTGCTACACATGTGGACTCATATGGATGATTTATAGATTGGCTGAGTGATGTGAGAATAATTTATTATATATTTGTACAGTagcggagagagatgagagaagaaaaaaatgtattttttccttGATACTGTATTCATAATTTCAAATGTTTTTGTTGCCTAAATCGTGGTTTCCCTTGTGTAATGTGGGTCGtgtgttttggggtatttctatagAAGCATACACTCTATCAAAGGGATGCATTGTTCataaaaactaaaatcatgaacAATCCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1150262 lncRNA downstream 13471 69487475 ~ 69488426 (-) True G1011243
TU1150267 lncRNA downstream 46602 69453943 ~ 69455295 (-) True G1011248
TU1150175 lncRNA downstream 138834 69354016 ~ 69363063 (-) True LOC110536299
TU1150193 lncRNA downstream 148753 69352905 ~ 69353144 (-) True G1011175
TU1150192 lncRNA downstream 149853 69351809 ~ 69352044 (-) True G1011174
TU1150307 lncRNA upstream 39332 69559666 ~ 69559874 (-) True LOC110535103
TU1150707 lncRNA upstream 113829 69634163 ~ 69634630 (-) True G1011587
TU1150708 lncRNA upstream 118818 69639152 ~ 69639375 (-) True G1011588
TU1150742 lncRNA upstream 170559 69690893 ~ 69691189 (-) True G1011616
TU1150744 lncRNA upstream 174190 69694524 ~ 69694733 (-) True G1011618
XR_005034729.1 mRNA downstream 22949 69473936 ~ 69478948 (-) True LOC118937381
XR_002475399.2 mRNA downstream 97691 69400550 ~ 69404206 (-) True LOC110536301
XM_036936213.1 mRNA downstream 106855 69306948 ~ 69395042 (-) False LOC110536299
XM_036936212.1 mRNA downstream 106856 69306948 ~ 69395041 (-) False LOC110536299
XR_005034728.1 mRNA downstream 106856 69306948 ~ 69395041 (-) False LOC110536299
XM_021622029.2 mRNA upstream 779 69521113 ~ 69532109 (-) True LOC110536305
XM_021622030.2 mRNA upstream 13450 69533784 ~ 69544398 (-) False c11h5orf34
XM_021622032.2 mRNA upstream 13450 69533784 ~ 69544398 (-) False c11h5orf34
XM_036936221.1 mRNA upstream 13450 69533784 ~ 69544398 (-) False c11h5orf34
XM_036936222.1 mRNA upstream 13450 69533784 ~ 69544398 (-) False c11h5orf34
TU1149998 other downstream 195469 69305336 ~ 69306428 (-) True G1011014
TU1149899 other downstream 382411 69116507 ~ 69119486 (-) True G1010922
TU1149378 other downstream 813935 68687257 ~ 68687962 (-) False G1010443
TU1148585 other downstream 1530569 67971071 ~ 67971328 (-) True G1009720
TU1146168 other downstream 3128948 66372642 ~ 66372949 (-) True G1007506
TU1152021 other upstream 1364142 70884476 ~ 70890991 (-) True G1012814
TU1152952 other upstream 1976974 71497308 ~ 71515434 (-) True G1013669
TU1153293 other upstream 2475747 71996081 ~ 71996688 (-) True G1013960
TU1153754 other upstream 2838951 72359285 ~ 72359505 (-) True G1014411
TU1154017 other upstream 2926320 72446654 ~ 72449340 (-) True G1014639

Expression Profile