RNA id: XM_036936221.1


Basic Information

Item Value
RNA id XM_036936221.1
length 2917
RNA type mRNA
GC content 0.48
exon number 11
gene id c11h5orf34
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 69533784 ~ 69544398 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaagcagcagcagccAATAGGAGCACACCTTTCATGTAGCGCAAATTTTGTTGTTGACAACAACGCGATTTGGTTTACTATCTAGCTAGCTGGAATATATAAAATAACATTTATGATGACCAGCAGCAAAACTAATATCGGTTTGATGATCATGTACAAGGATGAGTCAGTGGACGTCCGTTACGTAGATGATTCCCGTTTGCACTTGTCGCCCTGTGGCTCGGAGTTCATGTTGGAGAAAGCCCCTACACGATCTGCACATCCTCTTCAGTCTAATGAGAAGGTTCGACAGAGGACCAGGTTCGCCACCAGCAGCTACAAGGACCTGATGCTTGGTGCTTTGGAGTTCAGGAACGAGTATGCAACACGACCTTACCTGCCTGAAGAACTAATCTCGGACGACCACAgaaagCAGGTCTTCAGCATTGACCCTGAGGTGGAGTGGCCTGCATGTTATTCCTGTACTGCTGAGGTGGGATTGAACCGAGAGATCGTCGTCAGTTCAGTGGAGCGGAGTGCCAGTCTGCTGCTTTCTTCCTCTGGAGAGGAGTTCTCTGTAAACTTCACCTGCAGACTTAGTCACAACCAACACCACAGGCCTCGGAGCCGAGACCCAAATAGGTCTGTCACTGAACACATACAGCAAGACAACCAAACCTGTAGGCCAAAGACTCCATCTCAACAGAGTGGCGCCTGTGCTGAGCAACAGCAAGGAGAGGTATACCTGTCCACCAGAGTGGTCCAGCACCACTCTGTCTCCTGTGTTCCTCTGGTGTGGCGCTACCCTCTGTCTCTGGCCCTTCACCTCTGGCGCGCCCAGTCCCAGCCCtctggagagaggaacaggggggagacagaagaagagacAGCCAGGGGGAGAGACCAGACTGAGAGAGCAGTGACAATGACAAACACatctagaggagagaggaggtctCACCTGCCCCAAGCCCTGCCTCTCAGATGCCCTTCCCCTCATCAGCACAGGTGGAAGTCCATGTACTCTCTGGTCCAAGATGAACAGGAGGCAGACCAAGACCTCCCTACAGAGTTGGTTAAAGTGGTGTGGTGCCAAGGGGTGCTGTACAGGATAGTGGATGGAGCCATCCCAGTTGTGGAGGTTTCTCCAGGGGATGGTTCAGTCATCAGGTCTAACGGAGTGCTGGCCAGCTACTTCACCCACCACAGAGCTGGCCCTGGCCCTGGGGAGGTAAAGGATGTGACGTACCACCTAAGCAGCCTCCCCCCTGACACACCTGGGCAGGTCTACTCTGTGTGCTCTATGGTGACTCGAGCCAGCAGGATCCTGAACTGCTACAACCAGGTTAGACACTCTCTAAAGCTCCCTGCTGCACAGAGCTGCTACAACCAGGTTAGACACTCTCTAAAGCTCCCTGCTGCACAGAGCTGCTACAACCAGGTTAGACACTCTCTAAAGCTCCCTGCTACACAGAGCTGCTACAACCAGGTTAGACACTCTCTAAAGCTCCCTGCTACACAGAGCTGCTACAACCAGgAGACCAGTTCAGAGCCCTTTATACAGGAAGTACACATTTCTGAGTCTGGTTACATTAATACCACTGAAACAAGACAAAGCAGGCCTAACTGTGTTGCTGAAGAGCTGGAGAAGATCAAACGCTTCAACTTTCTGTTGGATAACAGTCATCTTCTTAAAGCCCAGAGGGGTTCTACAGTGGTGGGCTGTGGTTCTAAAGAGCACGTGGCCCACTGTGAGCCGGTCAACGAGAGCATCGCGGAGGCCCTCCAGAGAACTTCCAAAACCATCCAGGATATCGACAACCTCCTACTTTCTAGAGACACTGTCATGCAGGGCAGCGGATCATACAGTCCTGTGTGACGTGTGATGTCGGGTTTGCTGTCAGAAAAGACTTATTGCAAATGAGGAACATGTGAAGCAGTCAGAATTATTCATTGGTTTCAGTATCACTAAGTAAACATTGTCTAGTGGCAGTTTCATTGctttacttacagttgaagtacagactgcaggaaaaagaaAATAGTTTTCCATTATTGTGAGGCTCAGATATAGGTCAAGGTGTCTAACACTGTCCTCCAGCTCAGCAACAGCCTCAACCCATGTGTGGTTAGACATAGTGGTTAGACCAGACTCTGAAAGACGATGGTTGTGGTGTGTTGAAGCTAGGCAACAGTTTGTTGAAAAATACTTATTGTCCATCTTATTGCAATTCCTGTACTGTCTTCATCTGATATCATGAGGCGTATTGTACAGTGACAATCACAAGTAAGAACGATTTTAAGTCATCTGCCATGTCCATTTCACCTTGTTGTCAGTGCTTTTCCAAGTGTACAGTTTAATAAGTGCCATGATTCCCCATTTTGAATAACTCATCAGTTCATGGTGGTCTCACTTCAGTAGGACTGGAAAGAAGAACTCTAAAGGAAGTGGCTGGAAATGACTAATGTTTTGTGTTGTGCTATACAGGATGTGTGTCATTaatactctacaaggtgttgaaagtgttccacagggattctggtacatgttgactccaatccacagttaagttggctggatgtcctttgggtggtggacattcttgaaaaccccagcagcgttgcagttattgacacaaacggtgcacctggcacctactaccataccctattcaaagggacttaaatattttgtcttgtccattcaccctctgaatggcacacacacacagtccatgtctcaattgtcaaggattaaaaatccttctttaaccctccccttcatctacactgattgaagtgggtttaacaagtgtcatcaataagtgatcatagctttcatctggttcacctggccagtctatgtcatggaaggaTGTTTTGTATTCTTAGTGTATGTTCATGAATAAAGCCAAACTGTTCAGAATGTCTTACAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1150255 lncRNA downstream 13508 69501905 ~ 69520276 (-) False LOC110536304
TU1150256 lncRNA downstream 13508 69501905 ~ 69520276 (-) True LOC110536304
TU1150262 lncRNA downstream 45358 69487475 ~ 69488426 (-) True G1011243
TU1150267 lncRNA downstream 78489 69453943 ~ 69455295 (-) True G1011248
TU1150175 lncRNA downstream 170721 69354016 ~ 69363063 (-) True LOC110536299
TU1150307 lncRNA upstream 15268 69559666 ~ 69559874 (-) True LOC110535103
TU1150707 lncRNA upstream 89765 69634163 ~ 69634630 (-) True G1011587
TU1150708 lncRNA upstream 94754 69639152 ~ 69639375 (-) True G1011588
TU1150742 lncRNA upstream 146495 69690893 ~ 69691189 (-) True G1011616
TU1150744 lncRNA upstream 150126 69694524 ~ 69694733 (-) True G1011618
XM_021622029.2 mRNA downstream 1675 69521113 ~ 69532109 (-) True LOC110536305
XR_002475401.2 mRNA downstream 13450 69501897 ~ 69520334 (-) False LOC110536304
XR_005034729.1 mRNA downstream 54836 69473936 ~ 69478948 (-) True LOC118937381
XR_002475399.2 mRNA downstream 129578 69400550 ~ 69404206 (-) True LOC110536301
XM_036936213.1 mRNA downstream 138742 69306948 ~ 69395042 (-) False LOC110536299
XM_021622033.2 mRNA upstream 407 69544805 ~ 69555989 (-) False LOC110536307
XM_021622034.2 mRNA upstream 407 69544805 ~ 69555991 (-) True LOC110536307
XM_021619966.2 mRNA upstream 15280 69559678 ~ 69573629 (-) False LOC110535103
XM_036936225.1 mRNA upstream 37445 69581843 ~ 69627090 (-) False LOC110536308
XM_036936226.1 mRNA upstream 37445 69581843 ~ 69627090 (-) True LOC110536308
TU1149998 other downstream 227356 69305336 ~ 69306428 (-) True G1011014
TU1149899 other downstream 414298 69116507 ~ 69119486 (-) True G1010922
TU1149378 other downstream 845822 68687257 ~ 68687962 (-) False G1010443
TU1148585 other downstream 1562456 67971071 ~ 67971328 (-) True G1009720
TU1146168 other downstream 3160835 66372642 ~ 66372949 (-) True G1007506
TU1152021 other upstream 1340078 70884476 ~ 70890991 (-) True G1012814
TU1152952 other upstream 1952910 71497308 ~ 71515434 (-) True G1013669
TU1153293 other upstream 2451683 71996081 ~ 71996688 (-) True G1013960
TU1153754 other upstream 2814887 72359285 ~ 72359505 (-) True G1014411
TU1154017 other upstream 2902256 72446654 ~ 72449340 (-) True G1014639

Expression Profile