RNA id: XM_021622033.2



Basic Information


Item Value
RNA id XM_021622033.2
length 3307
RNA type mRNA
GC content 0.43
exon number 11
gene id LOC110536307
representative False

Chromosome Information


Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 69544805 ~ 69555991 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AATATGTTGTAATATCCGTTCGAGAACATAAAGTAGCTGGCTTGCTAGTAAATATGGAAATGAGGGAGGGTGAGTGAGGCCAAACTAAATAATTCCGTAACAAGTGACTGGAATTGCCAAACCACCTACGTTTTTTCTTTTGCGCCTCACCGAAAAGGTCATAACACAAAAAAAGCAACAGAGATGACTGAGAATTTCGACCGAGCTCCAGGCGCTGGTAGAGCCCATATAAAGCCAAGAAGCCCCGGCCTTGCAGATGTAGGAGACGGGGACGCCACATCTGTTTTCAACCAGCGTGAGCCTCTTCGGCAACCTCGGACTTCTCCACCTTTGACTGAGAACAACCCATACCATAGTGAAGCTATCGGCGGAGAAAGCAGAAGCCCAAGCAAACCCCACCAATTCATTCACAACCACAGCACTCCTGCCTCCAAAGTGAAAAGTGTGGACTCTCTGGTGAATACCTCCATTCTGTCAGCCAATGCACCGGAGTTCTACCCTGCTAGCTTCTCCCCCTATGAGGAATCAGTTTCGGAGGATGGCAGTGATGGCTATTATACTGAGATGACATTGGCTGAATTGGTTGAGGAGTTTCTCAGCTACCTAAACTCCTCGCCGGGGTCCTTTGAGACAGACATTGAGCACATGGTAAACATGCTGAACAGATGGGTTACTACTGAGGAGACGTTGCAAGAACTGGTGGAACTCATCTACACACAATCTACTGCTATCCCCAATTTCTCGTACACGGGGGCAAGGCTCTGTAACTTCCTGTCTCATAACCTCGTACTCAGCCCAGCAAGTGGAAACTTTCGTCAGCTTTTACTAAAACGgtgtcggACAGAGTATGAACAGAGGGACGTAGCGGTGCGAGGAGACCAGGAGACACAGAAGAAGTTCCAGGCCTATGTGCTCTTTCTGGGGGAGCTCTATCTCAGACTGGAGGTAAAGAGTGCAAAGGGGCCTCCGTCCCGAGCTGAGATCCTGCTAATCGCCCTGAGGGATCTGATGAATGCCCTCTTCTCTAACCCAGTGGATGGAAACCTCATCTGTGCTGTCAAACTGCTTAAGTTGACCGGCTCGGTTCTGGAGGATGcgtggaaagagaaagggaagtcTGACATGGACCAGCTAGTCCAGAGGATTGAGAACATTGTACTGGACACCCAGTGCAGCAGAGATGtgaagcagatgttattgcggctgGTGGAGCTGAGGTCTAGTAACTGGGGCAGAGtccatgctgctgctgcttctgatGCTACACCTGACAATGACCCCAACTACTTTATGAATGAGCCTACGTTCTACACTGCAGACGGCACTCCCTTCACAGCAGCCGACCCTGAATATTCAGAAAAATACCAGGAGATCCTGGATCGGGAAGACGACTGTTTCCCAGAGGACTGTGAAGAGAATGGAAATGAATCgtcattcaaTGACGAGGATGAGATGGACCCTGAGATCGAGGAAGCTTTTGAGAAGTTCTGCCTAGAGTCAGAGAGGAGACGACGATGAGAGCGCTGCGACAGACTGAGCTGGCACATACCTTTCGTGTTCGACATGCTGGAATGTTTGCGACTGGAAAAAATCTAAGAACtagccttttttttattttttgatacAGTTTGCTCTTCCTGGCAGTTCAGATTTTCTTCTGGATTTATGTTGGTTGGAAGATGGGGACAATCAACTGCATCAATAATCCGCTGAGTTATATGGACTGTTCTGAgtttgtattttttggggggtgggtggAGTTCCTTCTCTGCTTTTGCTTCTTTCAGAAACACTTATTTTCCTTGGTCTTCGTCTTAACGCCACAGGGAAAATGTGTGCTGTGGATTTGAAACACTGTTTACACAGCCACCATAAAAACCCAACTCTAGATATagaaagaaaaaatatttttcttCCTGTCCACACTCAGTGACCCATATCATATTTGCGCATTCACATTGATGTAGCCTCTGAAGTAGCACACAGATGCAATGCTCATTTCCTGTTACTTTCCATTTTGGGGTGGTTGTCCTGATAACTGCAGGCaattggcaacaaaaaaaaaaccacTAGAGCAAAAAATCTGATATGAGCGTCCAGAATGAGGGCACATAGATAATCCAGATGGTATCAGGAATTGAGGTCCACATATGGATGTGTTATTAATCTGAAGTCGAAAGACCAGATTCCATGGGGTTTTGTGGTGTTTACACATTAGGGAAAAGAGCAGATGGGTATCAGATGTGCAAGTAATTGACAATCTGAATGGGCTTCCTATGTAAACTTATCTCAACAGCAGAGTAGCAAACTAACTGTATAATCAATGACAGAACAGGGTTCAGCTCCAGGAATACTGCAAGGGCTTATTCAGTTGGAGGCGACACTCAGACTTGCAGATACAAATGTGATGTATAGAATGGACACTGCACTGCATCGGATGTTGCTACAGGGTACAAAAgggtaaataaatacagtattcaAGATAATTTTATGTTCTCTATAGTACATCAGCTTTCAGTGTATAGAATGTTGCACTACTGAACTCCAGGGCCATTTTGTTAATTATACATCTGTGAGGAGTTGGCCATTTATTTCAGTTTGATGGTCAACCACGCATTATCAGTCTATGCATTTTAAGGTGGTGGATTTGTGCAACTAACAAAGGAGTTTAAAGTACTGAATACAGGCAAGTGGCAGCAAACTGGCCATAAAAGAGAACACAAAAGTTACTTCAACTTTAGGGGTGTTTTTGTTCTCCCTTTTACAGGTTGAAAGTAGCGTTTTTAGAATGTGAAGTTATTTCACAGAATTGTTGAGTAGTACAGTTCTGTCTCTTGCTGGGAAGTGGGAACGGGGTCATTTTGAATCCAATTTGTCTGTTGAACAAGGCTTTAACACCTTTGCAGTCGGCAGTTTGGAACTGATTAAGAGACCGCTGCAACAGAAATCTCTCAGGACGGATTCCACAAtatattcttatttttttatcatcaattGATGAACCCCATACAAAGGAAATGTTTGTTTTATAAGTTTGTAAATAATATTCATAGTATTGTTTGTCTGCAATAAATTCTTCATAATATGAATATTTCACACACTAGTCTAGCTAGACATCCATCATATTGGCGACAGAtgttcatgtgaatattctaaaatctgcattgaaacaatatgcacattttcccactaGTGTTTGCCGCAAACAGACTTGTTGCTGATAAAAGTCAGTGCGTGATGACATGGTgtacacaaaatgtacttttttgcTGAAATTTTCAAGTACCAAATAAAATCTAAAGTTTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1150255 lncRNA downstream 24529 69501905 ~ 69520276 (-) False LOC110536304
TU1150256 lncRNA downstream 24529 69501905 ~ 69520276 (-) True LOC110536304
TU1150262 lncRNA downstream 56379 69487475 ~ 69488426 (-) True G1011243
TU1150267 lncRNA downstream 89510 69453943 ~ 69455295 (-) True G1011248
TU1150175 lncRNA downstream 181742 69354016 ~ 69363063 (-) True LOC110536299
TU1150307 lncRNA upstream 3677 69559666 ~ 69559874 (-) True LOC110535103
TU1150707 lncRNA upstream 78174 69634163 ~ 69634630 (-) True G1011587
TU1150708 lncRNA upstream 83163 69639152 ~ 69639375 (-) True G1011588
TU1150742 lncRNA upstream 134904 69690893 ~ 69691189 (-) True G1011616
TU1150744 lncRNA upstream 138535 69694524 ~ 69694733 (-) True G1011618
XM_021622030.2 mRNA downstream 407 69533784 ~ 69544398 (-) False c11h5orf34
XM_021622032.2 mRNA downstream 407 69533784 ~ 69544398 (-) False c11h5orf34
XM_036936221.1 mRNA downstream 407 69533784 ~ 69544398 (-) False c11h5orf34
XM_036936222.1 mRNA downstream 407 69533784 ~ 69544398 (-) False c11h5orf34
XM_036936223.1 mRNA downstream 407 69533784 ~ 69544398 (-) False c11h5orf34
XM_021619966.2 mRNA upstream 3689 69559678 ~ 69573629 (-) False LOC110535103
XM_036936225.1 mRNA upstream 25854 69581843 ~ 69627090 (-) False LOC110536308
XM_036936226.1 mRNA upstream 25854 69581843 ~ 69627090 (-) True LOC110536308
XM_021622041.1 mRNA upstream 103425 69659414 ~ 69665129 (-) True LOC110536312
XM_036936229.1 mRNA upstream 110122 69666111 ~ 69674383 (-) False LOC110536311
TU1149998 other downstream 238377 69305336 ~ 69306428 (-) True G1011014
TU1149899 other downstream 425319 69116507 ~ 69119486 (-) True G1010922
TU1149378 other downstream 856843 68687257 ~ 68687962 (-) False G1010443
TU1148585 other downstream 1573477 67971071 ~ 67971328 (-) True G1009720
TU1146168 other downstream 3171856 66372642 ~ 66372949 (-) True G1007506
TU1152021 other upstream 1328487 70884476 ~ 70890991 (-) True G1012814
TU1152952 other upstream 1941319 71497308 ~ 71515434 (-) True G1013669
TU1153293 other upstream 2440092 71996081 ~ 71996688 (-) True G1013960
TU1153754 other upstream 2803296 72359285 ~ 72359505 (-) True G1014411
TU1154017 other upstream 2890665 72446654 ~ 72449340 (-) True G1014639

Expression Profile