RNA id: XM_036936231.1


Basic Information

Item Value
RNA id XM_036936231.1
length 5326
RNA type mRNA
GC content 0.52
exon number 23
gene id LOC110536316
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 69738194 ~ 69770129 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTCGTGCCTGTCTGTGGCAGTCTGCGGAGGGAAGAGCAGTCTGCGGAGGGAAGAGCTGGTAGAAGCACTCTGCTACAGGACTAAGCTCTATTTTCAAATCTATAGAGCCAGCCTGGATTCTGCCTTCCCTCTCCTGGCTTCtccagtgagctgctctgctcaATCTGTGCTGAGATCTCCTTTTGATCTGGGCACCTGTTCCAACTCATCAGCCAGGTGAAGGTGATTCTTTCTCTTGTCTCCCTCAGCCATTGTTTTTGGGcttcttttcctccctccctcctctctgtgttcAGCCCTGCCTCATGCTTTGAGTGAGTGGGTTTAGCTGTGGCTTGCAGTGCGCGTGTAGCTCCAGAATATTCCTCACTAGAGTGAAGGTGTGGAACACTGGCGTAGAATACTGAGACAGAACAGTGAGGTGTTTTGGTGAGGTAGAATTATTTTGTAGAATACTGATTTAGAACACTGAGGTAGAATTTCTGAGTAGCGTTCTGAGCTGGAACTTTAGCAATAACTTTAATTCTGAAGTAGAATACTGTGGTGGAATACTTGATCGGAATACTGAGCTAGAAGTATTTTGTAGAACATTGAGGTAGGTACTGTAGAGTAGGGAGGATGGGGGGTCATACTGCAGTGGTGTGTTTGGTTCTGCTGGCCCTATGCTGTGTGCTACTGCTAAGAGGAGGGGAGAGCGCAGGAGGCATAGTCTCTATAGGCCAGgctgtggagagagggatggatggaggaatggaggcccTACATGGAGAGGAGTCCCAGGATGAGCCGGCTAAAGAACAGGAGCTCACAGAGACGCAAAGACAGACTGGCAAGGCAAAGAGAGCCACAGAGGAAGAAGCCGTACCAGCCCGGGTCAGGAGAgccccagaggaggaggagggcaaagGGAAGAAAAAAAAGGGTAAGAAGGACAAGAAGAACAAGGAGTCTAAAGCAGACAAAAAGCTGAAGGACAAGGGAGGCCGCCGCGGCAAAGCACCAACAACTCCACCACCgaccactaccacactaccaccgaCCACTACCACAGAGGTGTACACAGAGCCAGCGCCCACAGAACCTGACCCCTACCCAGACTTCCCCTATTTAGACAGAGAGGATGACTACTGGAACCCTGATGATGATAAGCCAGCCACCCCAGAGACTGACTCAGAGGATGACTACTGGAACCCTGATGATGATAAGCCAGCCACCCCAGAGACTGACTCAGAGGATGAGTACTGGAACCCTGATGATGATAAGCCAGCCACACCAGAGACTGACTCAGAGGATGAGTACTGGAACCCTGATGATGATAAGCCAGCCACCCCAGAGACGAAATCAGAGGATGAGTACTGGAACCCTGATGATGATAAGCCAGCCACCCCAGAGACTGACTCAGAGGATGAGTACTGGAACCCTGATGATGATAAGCCAGCCACCCCAGAGACTGACTCAGAGGATGACTactggaagggagaggaggaggagcctgCAGGCCCAGTGGTCGACCCAGAAGATGACTATTGGACGGGAGAGGACCCGACGGCCACACCCCCCCCTCTTGTGGTGGATGGAGAGGTGGACACGGGAGATGAAGACTACTGGGAAGCCAAATATGAGGTGCCCGAGAATCTTCCTTTCCCTGACGGTAAAGAGGTCGTCCCCACAGAGAAAGACGACTTGAGCTACGCTGTCACAGAGGATTCTATTACACCACCACCTACCTATGAAAGCCCATGGTACGAGGAGTATGACTATGGATATAGTGGTGGAGAgaCAAaaaaacaggaggaggaggaggagagggaaagacaaaggaaagaaaaggagagagaggacagagAGAGAGCTcagcagaggagggaggaggaagataggGAAAAAGTCAAGAAGAGACCACCCGTATTCAAAGAGCCCAAAAAGTGTCCTCCCCTGGGTATGGAGTCTCACAGGATAGAATCAGACCAGCTGctggcctcctccatgtctcaccACCGTTACAGCCAGGGCAGGGCACGGCTCAACATGCAGGCTTCAGAGGATGAGGACGACATGCATGGTGGGGCGTGGTGTCCTAACCAAGAGGACAACATTCACTGGTTTGAGATTGACGCTCGCAGAGTAACAGAGTTTACTGGGATCATAACACAAGGACGAGACTCACGCAAtgaGAGTGACTTTGTGACATCGTACTATGTGCAATTCAGTAATGACAGCAGAGAATGGACAACCATGAATGACGGTTACTCTGACTGGttgttCTTTGGTAACTCTGATAAGGACACCCCAGTGCTGAATCAGTTAGCTGAGCCCATACTAGCTCGCTACATCAGAGTCATCCCTCAGAGCTGGAACGGCAGTTGCTGTATGAGGCTGGAGGTGCTGGGATGCCCACTGcctgACCCCACCAGTGCCTACCAGAGGTTGCAGAATGAGGTGACTCCAGTCCAGTACCTGGACTTCAGACATCACAACTACTCAGATATGGTCACGCTGATGAAGTCTGTGTCTGAGGAGTGTCCCAACATCACCAGTATGTACAGCCTGGGCCGCAGCTCCAATGGACTAGACATTGTGGCCATGGTGATATCAGGCAACCCCACAGAACATGAGATAGGTGAGCCAGAGTTCCGATACACGGCTGGTCTCCATGGAAATGAGGCAACAGGGCGGGAGATGGTTCTTCTTCTGATGCAGTACCTTTGTAAGGAGTACAGAGACGGCAACCCCAGAGTGCGCCGCCTGGTGGAAGGAATACGTACCCACCTGGTGCCCTCTCTGAATCCTGACGGACAGGAGAAGGCCCTCATAGCGGGTTCAGAGTTGAGTGGTTGGACCACAGGCCACTGGACGGAGGACGGCCATGACATCTTCCACAACTTCCCTGACCTGAACAGTGTTCTGTGGGAGGCAGAGGACAAGGGTATGGTGCCCAAACTGACCCCCAATCACCATGTCAAGATCCCTGCTGACACAGTGGGGGACGACAAGATAGCTGTGGAGACTCAAGCCATCATCTCGTGGATGGAGAGCCACCCGTTTGTACTGGGGGCCAACTtccagggaggggagagggtagtGGCCTACCCCTACGACAACCACCGCCTAACCAAGGCCGCCAGCAccagcgagagagaccgggcacaCAGCCGCAAGAAGAGACAGTTCGAGGATGAGTATGACAGAGGGGCAGATTGGGATAGAGGCTATGACCGTGAGGAGCCAGAGGATGATGATAGAAACAGGGGATACCAGGAACCAGAAGAGGAGCGTTGGAACAGGGGATACCAGGATCCAGAAGAGGACCGGCGGAACAGGGGATACCAGGAACCAGAAGAGGACCGGCGGAACAGGGGATACCAGGAACCAGAAGAGGAGCGTTGGAACAGGGGATACCAGCAGCCGGAAGAGGACCGATGGAACAGGGGATACCAGGAACCAGAAGAGGACCGTTGGAACAGGGGATACCAGCAGCCGGAAGAGGACCGATGGAACAGGGTATACCAGCAGCCGGAAGAGGACCGGCAGAAcagggagctggaggaggagtggagggggcaTGGCTATGGCCacagggaagaggaagaggaggatgacagaGGGGGACATCAGGAAGCAGAGCCTGAGGATGAACCCAGGACCACGGCAGACGCCTCCTTTTTCAGGTGGTTGGCTATCTCCTACGCCTCCACTCACCTGTCCATGACATACACTTCCCACGGCTCCTGTCACGGCAATGACATCACTGGCGGCGTCGGAATCATCAACCGCGCCAAGTGGAAGCCCATCACAGGAAGTATGAATGATTTCAGCTACCTGCACACTAACTGTCTGGAGCTGTCAATGTTCCTGGGCTGTGATAAGTTCCCCCATCAGAGTGAGCTGGTCATTGAGtgggagaagaacagagaggccATGCTCACCTTCATGGAGCagGTACATCGTGGGATCAGGGGCGTGGTGAAAGACAATGAGGGGAACCCCATCACTAATGCCACAGTGTCTGTAGAGGGGGTCAACCATGATGTCACTACAGcTGTAACAGGGGACTACTGGCGCTTGTTGAACCCAGGTGAGTACCGTGTGACGGTGCGGGCAGAAGGCTTCACCCCCCTGACCAAGCTGTGTGTGGTGGGCTACGAGCCAGGGGCAACTACCTGCAGCTTTAACCTGGCCAAGTCCAACTGGGACCGCATCAAACAGATCATGGCCCTGCACGGCAACAAGCCCATCCGCTTGCTCAGCCACGGCAACGGTGGAACACGACGGAACACCGCCTCCAACGGTAACAGCCGTGTGGTTCATAACAATGGTGCTGCCGCCAATGAACCTGAGACGAGTCGCATGCGCCAGCAAAAGAGGAGGCTCGGCCGCCTCCGTCGTCTACGACAACAGAAACTGATGAGATCGACAACGACTTTGCCCCCGACAACCACGCCGGTTCCCACGACAACAGAGGCAGAACCCACCACTGCCTGGTACGACTCGTGGCTCATAGGAGAGGGGCAAACATCGGCACCAGAAGGTTTCACAGACTCCATCTTGGATTACAACTACGAGATCGACGATTACTAAGGGTAACACCAAGACCTTGTTCCAATACATCCTTTCTCCCCATTTCCTTAAAATAATCAAGGTAGGGAAGGAAGAAGTTGAACAGGACCAATTTGTCAGTCAAGCCCAGACTGTTAACTCAATTCCTGGACAATTAAGTGACCCCTTGAAAATCTGAGTGGACTGGATATGTTTAAGCAATATGGCTTAATCTCCAATAGGATAGATTGACTCTCCCCCTCCTATATTACTGAACCCATCCATTCTTTCAGATCTACAAATGGGCCACAAGAAGCGTTTAGGTATATTTACAGAAACTCAAAAGGAACAAAGATGTTGAATAGTCAGACGCACACGCtaatgtcagtgttctgtatAACTGCTTGAGTAGGTCTTTTGATACGAAGTTCAACACAAATGAAAATGTCAGTACCGATATCTGGGAAGGTCCTTTTACACCAAGGCCTTCCTAGAGAATGTGCTTCAGAGATCATGTATATGTGCTGGTTGTAAATTAAACTTATTTTTACCACCTCCACCCCTGAAGAGTAAAAACAAAGAAGCAAAATGTATTTCTTTGAAAAGGGAGGATTTATTTACATTATTTTCACCCATGACAGCAAAACCATAATACCAACAGACATTAAAATGTTAACTTCACAAAATGTTAGTTGAAGGTTGAGAGAACGAGAGATTTTCTGAAATGTTCCTCATAACGTAGCTGAGGAAAGTTATTTTTTCAATGAATAAAGGCTCATTTACGTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1150759 lncRNA downstream 22524 69715451 ~ 69715670 (-) True G1011626
TU1150753 lncRNA downstream 26821 69709686 ~ 69711373 (-) True G1011623
TU1150745 lncRNA downstream 33232 69704297 ~ 69704962 (-) True G1011619
TU1150744 lncRNA downstream 43461 69694524 ~ 69694733 (-) True G1011618
TU1150742 lncRNA downstream 47005 69690893 ~ 69691189 (-) True G1011616
TU1150793 lncRNA upstream 29947 69800076 ~ 69892958 (-) True G1011657
TU1150839 lncRNA upstream 140239 69910368 ~ 69911768 (-) True G1011700
TU1150868 lncRNA upstream 165817 69935946 ~ 69938863 (-) True G1011719
TU1150869 lncRNA upstream 170722 69940851 ~ 69942377 (-) True G1011720
TU1150870 lncRNA upstream 172870 69942999 ~ 69943236 (-) True G1011721
XM_036936228.1 mRNA downstream 63736 69666111 ~ 69674458 (-) True LOC110536311
XM_036936229.1 mRNA downstream 63811 69666111 ~ 69674383 (-) False LOC110536311
XM_021622041.1 mRNA downstream 73065 69659414 ~ 69665129 (-) True LOC110536312
XM_036936225.1 mRNA downstream 111104 69581843 ~ 69627090 (-) False LOC110536308
XM_036936226.1 mRNA downstream 111104 69581843 ~ 69627090 (-) True LOC110536308
XM_021622050.2 mRNA upstream 21282 69791411 ~ 69804610 (-) False LOC110536317
XM_021622049.2 mRNA upstream 21282 69791411 ~ 69805945 (-) False LOC110536317
XR_005034731.1 mRNA upstream 21282 69791411 ~ 69805945 (-) True LOC110536317
XM_021619968.2 mRNA upstream 51402 69821531 ~ 69823285 (-) True LOC110535106
XM_036936234.1 mRNA upstream 77094 69847223 ~ 69892081 (-) False LOC110536318
TU1149998 other downstream 431766 69305336 ~ 69306428 (-) True G1011014
TU1149899 other downstream 618708 69116507 ~ 69119486 (-) True G1010922
TU1149378 other downstream 1050232 68687257 ~ 68687962 (-) False G1010443
TU1148585 other downstream 1766866 67971071 ~ 67971328 (-) True G1009720
TU1146168 other downstream 3365245 66372642 ~ 66372949 (-) True G1007506
TU1152021 other upstream 1114347 70884476 ~ 70890991 (-) True G1012814
TU1152952 other upstream 1727179 71497308 ~ 71515434 (-) True G1013669
TU1153293 other upstream 2225952 71996081 ~ 71996688 (-) True G1013960
TU1153754 other upstream 2589156 72359285 ~ 72359505 (-) True G1014411
TU1154017 other upstream 2676525 72446654 ~ 72449340 (-) True G1014639

Expression Profile