RNA id: XM_036936234.1


Basic Information

Item Value
RNA id XM_036936234.1
length 3811
RNA type mRNA
GC content 0.48
exon number 16
gene id LOC110536318
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 69847223 ~ 69892082 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTCATGGGCCAGATATGAACACGCCCCTTCCGACTGGCTGTGTGTTCCACGGGCGATGGAATGGAATATTGGAACCACCAACTTGGTGGATCAAGATTTGCGAACTCTTACTATAAATCATTGAACTTCCATAGACTGTACACTTTGCACACTGTACACATCCAAATGTAACCGAAATATTGACCAGAACCACGGGGGAAACCGCTTAGAGCTCCGCCAAATGTTACAACCAAGATAAAAAACCcagcccttttttttttttattatgcaCCAAGAGGTGGAGCACGTTGAGTCTAGTACACTTCACCAACTCCCACCAGTGCTACTGGTCTGTGCTTCAGCCGCTGTTACGAATGCGTTACCAAAGGATGTAGGTCTTGCCGAGGTCTCGGGCTGTTTCGGGATGTATTGATGGCTCAACAGTCCTATCCTTCTTTGATTCCGCACCAAATTTCGCACGAAACACAACAGTCTCCGGAATTGGAATGGAAATGCCCTCCGGACGCTGTATTCGGAGCCGACAATATGAACCATGCCCTAGTTAATATTACAAGGATTTCCTCGATCGCCTGTGTATAGACTTTCAAGGAATTTGAAATGTATACATTTGATTCGGATTTGGAGTAAAACGAAAAGCAATTTAGCCGTGAAGAGCAAGGTGTTGCTGTGCCGAcgtaaaaacaacaacacatctatTCAGCAAAATCAAAGGATTTTAGATGGAGCTGGAGAATATTGTGGCCAATACGGTACTGTTAAAAGCAAGAGAAGgtggAGGTGGGAAGCGGAAGGGGAGGAGTAAGAAATGGAAGGAGATCCTTCGCTTCCCCCACATCAGCCAATGCGCTGAGCTGGGCAACAGCATCGATCGGGACTACATAAGCCTGTGTGAGAAGCAGCCTATCGGCAGACTGCTGTTCCGCCTGTACTGTGAGACCAGACCTGAATTGCTACGATGCATCCACCTACTGGACGccatgGACGACTATGAGCTGGTGCCTGATGAGAAACGGAAAAGCAGAGGAGATCAGATTATTGGGAAGTTCCTGTCTAAACAGtcatcCGAGTGTGTGGAGGCAGCAGAGAGCCTTGCTGAGCAGTGTAGAGAGAACCTGGAGCTCCACCCCTGCAAGGAGATCTTCAGTGACTGTCGCAAAGCTCTCCATCACTACCTGAGAGGAGCTCCCTTCTTGGACTATCAGAACAGCATGTACTTTGACCGTTTCCTACAGTGGAAGATGCTGGAGAGGCAGCCAATAGCCAAGGATACGTTTCGACAGTACAGAGTACTGGGGAAGGGTGGATTCGGAGAGGTGTGTGCGTGCCAGGTGCGAGCCACAGGGAAGATGTATGCCTGTAAGAAGTTAGAGAAGAAGAGGAttaagaagaggaaaggagagtccATGGCCCTCAATGAGAAACAAATACTAGAGAAGGTCAACAGCAGATTTGTTGTGAGTTTAGCGTATGCCTATGAGACCAAAGACGCTCTGTGTCTAGTGTTGACCTTAATGAATGGAGGAGATCTGAAGTTCCACATCTATAGCATGGGGACTCCAGGCTTTGAGAAGGACAGGGTCCAGTTCTATGCTGCCCAGATCTGCTGCGGCCTTGACCACCTACACCAGGAATCCATCGTCTACAGGGATTTAAAACCAGAGAATATTTTATTAGATGATAATGGACACATCCGGATCTCAGATCTGGGCCTGGCCATCAAAGTGGCTGAAGGGGACCCCATTCGAGGCAGagtgggaacagtgggttacatGGctccgGAGGTGATCAACAACGAGCGCTATGGGATGAGTCCAGACTGGTGGGGGCTGGGATGTCTCATCTACGAGATGACCGCTGGACGCTCACCCTTCCGCGCACGCAAAGAACGAGTGAAgcgggaggaggtggagaagagggtgcaagaggaagaggaggagtacaGCGACAAGTTTACAGAAGACACCAAGGCCATCTGTAGGGTGctgTTGACCAAAGATCCTAAGCAGAGACTGGGCTGTACAGCAGAGGGGTCATCAGGGGTGAAGGCTCACTGTTTCTTCAGGAACATCAACTTTAAAAGGCTGGAGGCAGGCATCCAGGAGCCCTCCTTCGTACCGGACCCCCGGGCGGTGTACTGTAAGGATGTGTTGGACATTGAGCAGTTCTCTACAGTCAAGGGAGTAAATCTGGACCAAACCGACAACGACTTCTACTTCAAATTCTCTACAGGCTGCGTGTCCATCCCATGGCAGCACGAGATGATAGATACAGAGTGTTTCAGTGATCTGAACGTGTTTGGGCCCCAGGGGACCAGACCCCCAGATCTGGACTGGAACACCCCCCCCGAGCCTCCCCGACGCAGCCTGCTGGACAGGATCTTCAGGAGACATcaccCCGAGGTGTCCATTGCCAACAGCCGCTTGTCTTCCTGCAGTGTGAACTCGGTGGACTCCATGTCAAACTCTGCCCCCTAGTGGCCAGGGCCCTGTGTGGCGCcacacagacagaggaggagCCTGTAGGATCTCCTCCTTGCTGGTTGGTTTACACCCGGCCTGACCAGCTGTCAGTCATCCGGAGGCACCCCTCCCACGGTCAGCCTAGGGGAAATGCTGACCATGACCCGGGGCCTGAGAGACCGACCCATGGGAAATGATTAGAGGGACGTTCAATGATGCAAAGAAGTTTTGAGAACGATGCTCAGACATTTCACTTACCCTCATGATTGCTGGAGTAGAGAAGAGCCACTGAGGTTGTTGATGAATAAGAAAAAAACGATCTAATTCAGGGGATCCACTGTCTAAGAAAGACCACCACAGGGAATACAAGATGGGGTCTTTGTTGAAATGTTgtagcttttttattttttattccttGCATAAATACTAATTCACACTCAAATGCACTCTGTATTTGttcatctatttctctctctctctctctctctctctctctctctctctctctctctccccccacccccactaATCTAATCACTTATATGCATGCAACCAACAACATCACCAACCTCAAGAAACAATGTGCATATTGCCTTGTATACCCTCAGGCCAAAGACATAGTTCAGTTGTGTGCCTGTCATTGTTGCCATATTGATTTTGGAGGATGGCTTGGTCTTTATTCAATCACTAATTGAATCTGCAGCTATGTTACACCTAAGTAACAATCAAACAAGTGTGTTTTCACACCATGGACAAGTGTGTGAGACCAGACAGGTGTAGTATCCTCACACCTGCATAGCCCTCATGCTAATACCCCACCACAGGCATCCTGTTGACCTTGAGCAAAATGAGATGTCTTTTCAAACCAGTAGTGAACCATTTATACACCAATTAAGATGTTTTAACAGTAAATATGTTGTTTTACCTCTGACATTAAATAAATATTACTGTGATATACCCTTTGTCATATACAATGAGCTGGTGCTGTTTTATGTTTGTGTTGCCATCATGACCATGGGTGTATCTCAATCGTTTCAATGGGGGCATTTCTCTCATCTTCTTTCCTTTGTCTGCACTGATCATAAAGGAAAGGTTAGGATTCCTGGCAGAAATATGGCCAATGCCTACAGGGAATAAGCTTTAACCAGTCCAGTtcagatgaaggaaaggagacaaagagAGGACGCCGTGTTAAACTAGTGAGATGCCTTGGCTCTGGTAGTGTCCTTGGTGAAGGGACCACACTAAGGCAACCCTTCCAACACGCCCAAACAAAAGGGAAGAACAGCTTTGGTTTTAGAATTTGATATATGTTAATTTTACTGGACAATAAATAGTTCATTACATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1150759 lncRNA downstream 131553 69715451 ~ 69715670 (-) True G1011626
TU1150753 lncRNA downstream 135850 69709686 ~ 69711373 (-) True G1011623
TU1150745 lncRNA downstream 142261 69704297 ~ 69704962 (-) True G1011619
TU1150744 lncRNA downstream 152490 69694524 ~ 69694733 (-) True G1011618
TU1150742 lncRNA downstream 156034 69690893 ~ 69691189 (-) True G1011616
TU1150839 lncRNA upstream 18287 69910368 ~ 69911768 (-) True G1011700
TU1150868 lncRNA upstream 43865 69935946 ~ 69938863 (-) True G1011719
TU1150869 lncRNA upstream 48770 69940851 ~ 69942377 (-) True G1011720
TU1150870 lncRNA upstream 50918 69942999 ~ 69943236 (-) True G1011721
TU1150886 lncRNA upstream 63555 69955636 ~ 69955925 (-) True G1011730
XM_021619968.2 mRNA downstream 23938 69821531 ~ 69823285 (-) True LOC110535106
XM_021622049.2 mRNA downstream 41278 69791411 ~ 69805945 (-) False LOC110536317
XR_005034731.1 mRNA downstream 41278 69791411 ~ 69805945 (-) True LOC110536317
XM_021622050.2 mRNA downstream 42613 69791411 ~ 69804610 (-) False LOC110536317
XM_036936231.1 mRNA downstream 77094 69738194 ~ 69770129 (-) True LOC110536316
XM_021622054.2 mRNA upstream 3535 69895616 ~ 69898166 (-) True LOC110536320
XM_021622063.2 mRNA upstream 82807 69974888 ~ 69983058 (-) True LOC110536328
XR_005034807.1 mRNA upstream 104247 69996328 ~ 69999946 (-) True LOC110536645
XM_036936243.1 mRNA upstream 134127 70026208 ~ 70030420 (-) True LOC110536332
XM_021622073.2 mRNA upstream 208041 70100122 ~ 70113042 (-) False smyd1b
TU1149998 other downstream 540795 69305336 ~ 69306428 (-) True G1011014
TU1149899 other downstream 727737 69116507 ~ 69119486 (-) True G1010922
TU1149378 other downstream 1159261 68687257 ~ 68687962 (-) False G1010443
TU1148585 other downstream 1875895 67971071 ~ 67971328 (-) True G1009720
TU1146168 other downstream 3474274 66372642 ~ 66372949 (-) True G1007506
TU1152021 other upstream 992395 70884476 ~ 70890991 (-) True G1012814
TU1152952 other upstream 1605227 71497308 ~ 71515434 (-) True G1013669
TU1153293 other upstream 2104000 71996081 ~ 71996688 (-) True G1013960
TU1153754 other upstream 2467204 72359285 ~ 72359505 (-) True G1014411
TU1154017 other upstream 2554573 72446654 ~ 72449340 (-) True G1014639

Expression Profile