RNA id: trnal-caa-27


Basic Information

Item Value
RNA id trnal-caa-27
length 84
RNA type mRNA
GC content 0.55
exon number 2
gene id trnal-caa-27
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 70056555 ~ 70056666 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcaggatggccgagtggtctaaagcgccagactcaagttctggtctccgattggaggcgagggttcaaatccctcttctgaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1150634 lncRNA upstream 41560 70014146 ~ 70014995 (+) True G1011528
TU1150632 lncRNA upstream 57015 69999211 ~ 69999540 (+) True G1011526
TU1150628 lncRNA upstream 60752 69993737 ~ 69995803 (+) True LOC110536329
TU1150618 lncRNA upstream 68245 69983223 ~ 69988310 (+) False LOC110536329
TU1150646 lncRNA downstream 338 70057004 ~ 70057327 (+) True trnal-caa-28
TU1150647 lncRNA downstream 874 70057540 ~ 70062206 (+) True G1011540
TU1150656 lncRNA downstream 35017 70091683 ~ 70091961 (+) True trnal-caa-99
TU1150659 lncRNA downstream 39501 70096167 ~ 70096457 (+) True G1011550
TU1150663 lncRNA downstream 43342 70100008 ~ 70124758 (+) True G1011551
trnal-caa-26 mRNA upstream 2432 70054012 ~ 70054123 (+) True trnal-caa-26
trnal-caa-25 mRNA upstream 2895 70053549 ~ 70053660 (+) True trnal-caa-25
trnal-caa-24 mRNA upstream 3358 70053086 ~ 70053197 (+) True trnal-caa-24
trnal-caa-23 mRNA upstream 3814 70052630 ~ 70052741 (+) True trnal-caa-23
trnal-caa-22 mRNA upstream 4245 70052199 ~ 70052310 (+) True trnal-caa-22
trnal-caa-28 mRNA downstream 321 70056987 ~ 70057098 (+) False trnal-caa-28
trnal-caa-29 mRNA downstream 763 70057429 ~ 70057540 (+) True trnal-caa-29
trnal-caa-30 mRNA downstream 1648 70058314 ~ 70058425 (+) True trnal-caa-30
trnal-caa-31 mRNA downstream 2099 70058765 ~ 70058876 (+) True trnal-caa-31
trnal-caa-32 mRNA downstream 2539 70059205 ~ 70059316 (+) True trnal-caa-32
TU1150637 other upstream 36649 70019103 ~ 70019906 (+) True G1011531
TU1150633 other upstream 47230 70001469 ~ 70009325 (+) True LOC110536331
TU1150573 other upstream 146308 69904948 ~ 69910247 (+) True LOC110536323
TU1150422 other upstream 345222 69705434 ~ 69711333 (+) False sb:cb288
TU1150364 other upstream 422679 69633501 ~ 69633876 (+) True G1011336
TU1150947 other downstream 72616 70129282 ~ 70130851 (+) False LOC110536338
TU1152188 other downstream 987593 71044259 ~ 71044604 (+) True G1012975
TU1152616 other downstream 1416760 71473426 ~ 71474631 (+) True G1013375
TU1152796 other downstream 1738762 71795428 ~ 71797315 (+) True LOC110536353
TU1152869 other downstream 1781672 71838338 ~ 71840470 (+) False G1013617