RNA id: trnal-caa-33


Basic Information

Item Value
RNA id trnal-caa-33
length 84
RNA type mRNA
GC content 0.56
exon number 2
gene id trnal-caa-33
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 70059646 ~ 70059757 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcaggatggccgagtggtctaaggcgccagactcaagttctggtctccgattggaggcgagggttcaaatccctcttctgaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1150646 lncRNA upstream 2319 70057004 ~ 70057327 (+) True trnal-caa-28
TU1150634 lncRNA upstream 44651 70014146 ~ 70014995 (+) True G1011528
TU1150632 lncRNA upstream 60106 69999211 ~ 69999540 (+) True G1011526
TU1150628 lncRNA upstream 63843 69993737 ~ 69995803 (+) True LOC110536329
TU1150621 lncRNA upstream 73249 69983223 ~ 69986397 (+) False LOC110536329
TU1150656 lncRNA downstream 31926 70091683 ~ 70091961 (+) True trnal-caa-99
TU1150659 lncRNA downstream 36410 70096167 ~ 70096457 (+) True G1011550
TU1150663 lncRNA downstream 40251 70100008 ~ 70124758 (+) True G1011551
TU1150946 lncRNA downstream 68739 70128496 ~ 70129222 (+) False LOC110536338
TU1150951 lncRNA downstream 72762 70132519 ~ 70134485 (+) True LOC110536338
trnal-caa-32 mRNA upstream 330 70059205 ~ 70059316 (+) True trnal-caa-32
trnal-caa-31 mRNA upstream 770 70058765 ~ 70058876 (+) True trnal-caa-31
trnal-caa-30 mRNA upstream 1221 70058314 ~ 70058425 (+) True trnal-caa-30
trnal-caa-29 mRNA upstream 2106 70057429 ~ 70057540 (+) True trnal-caa-29
trnal-caa-28 mRNA upstream 2548 70056987 ~ 70057098 (+) False trnal-caa-28
trnal-caa-34 mRNA downstream 328 70060085 ~ 70060196 (+) True trnal-caa-34
trnal-caa-35 mRNA downstream 769 70060526 ~ 70060637 (+) True trnal-caa-35
trnal-caa-36 mRNA downstream 1210 70060967 ~ 70061078 (+) True trnal-caa-36
trnal-caa-37 mRNA downstream 1651 70061408 ~ 70061519 (+) True trnal-caa-37
trnal-caa-38 mRNA downstream 2103 70061860 ~ 70062037 (+) True trnal-caa-38
TU1150637 other upstream 39740 70019103 ~ 70019906 (+) True G1011531
TU1150633 other upstream 50321 70001469 ~ 70009325 (+) True LOC110536331
TU1150573 other upstream 149399 69904948 ~ 69910247 (+) True LOC110536323
TU1150422 other upstream 348313 69705434 ~ 69711333 (+) False sb:cb288
TU1150364 other upstream 425770 69633501 ~ 69633876 (+) True G1011336
TU1150947 other downstream 69525 70129282 ~ 70130851 (+) False LOC110536338
TU1152188 other downstream 984502 71044259 ~ 71044604 (+) True G1012975
TU1152616 other downstream 1413669 71473426 ~ 71474631 (+) True G1013375
TU1152796 other downstream 1735671 71795428 ~ 71797315 (+) True LOC110536353
TU1152869 other downstream 1778581 71838338 ~ 71840470 (+) False G1013617