RNA id: XM_036936342.1


Basic Information

Item Value
RNA id XM_036936342.1
length 3971
RNA type mRNA
GC content 0.53
exon number 13
gene id LOC110535109
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 72763000 ~ 72842417 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACACTGAGATGAACGATAAACAACCAGCTTTTCCACTTCGGTTTCTATAATTATCgaagagaggtacagagaggacaATTTGCGAACAGTTTTCACCCAGAAAACCCTGAAGAATATATTAATGTGACAATTTTTTTATTGCTTGTGATTGTCGCGTAAAATGCGCGCGCTTGTGATGCATCTTCTTGGATATCCAGGATCATATTCCGTTGAATAAAACTTGTGACCCGACAATAAATATTCCTAATCTGCACGAGTATTTATAGCAACTTTTGAATCAATTATTTTCTCACCATCCTCTACCACGCACCTTCACACAAAACCGGACTCTATATAAATAGATGAAGATAGAAGATGCGACGACAATGGTAAGCAGATAGTATTTGACCCTACCTACAAACATCGGAACCATTACAATTTTTAAATGTGACTTCCTCCAAGAATCGCGGTGCGGTCACCTATGTTTTCGGAGCGGAGTGACATCTACAGAATTATTATAAATGCCTGATTATCGGACCATCTCTGTTTGCGGTGCGGTGTTTACGTTAAAATTGTAGGATGATGAACAGTGATTTGGAGCACGTTTCACTCAATTCAACGACGGCCAGCAACTCAGGGACTGGGTCGGGCGGCCGAGGGCTGTCAGCCAACGTTCGGAAGCTGCACAACGCGCTCAACTTGCTGCTCACTGACTTCGAGAGAGAACAATTCATCCACTGCCTCAATGTTTACCACGCTAAACGCAACGTCTTCGACTTGGTTCAAACTCTCAAAATAATCCTCAACACGCCGAACAAACGACAACTCCTCCCCATGTTGCGTTTGGTCATTCCCCGCTCAGATCAGCTGTTGTTCGACCAGTATACTTCCGAGGGCCTGTACCTTAAAACGGATCATCTACCACTAAACAGTGTCAACAACCCTGAAAGCTTTGGAGGAGTAGGCAATACTGCTGTTGGAGAGATCCGCGAAGTGACACTGAGACGCAGCAAGAGCAATGAGGGCTTAGGGTTCAGTATCCGGGGAGGTTCTGAGCACGGTGTGGGAATCTATGTGTCGCTAGTAGAACCCGGATCTTTTGCCGAGAATGAAGGACTGAGGGTCGGGGATCAGATAGTGACTGTTAACGGCATGCTGTTTGACAGAGTCTCACACATGGAAGCAGTCAAGGTCCTGAAAGGCTGTAAGAAGCTGGCCATGTCAGTTTGTTCAGTAGGCCGGATCCCCGGGGGGTATGTCACCAACAACATTTATGCCTGGGTGGATCCTCATGGCCGCAGTGTGTCCCCTCCCTCCGACCTGGAGCAGCAAAGCACCCTGGGACCACAACACAGCCAGAGACgtacaggacacacacaggagaagacAGTAAACCTGAACCTGGACGATGGTCTCTCTCTGGGCCTGATGATCAGAGGAGGGGCGGAGTATGGCCTGGGTATCTACATCACTGGGGTAGACCCCGGCTCAGCTGCAGACCACGGGGCACTCAAGgTGGGCGACCAGTTGCTGGAGGTGAATGGGCGGAGCTTCGTGGCCATCCCCCATGACGAGGCGGTGAGGATCCTGAAGACGTGTCGTCACCTGCTGGTGAGGGTGAGGGACGTTGGCCGCGTGCCCCATGCCCGCACCGTGGTGGACCAGACCAAATGGATCAGCAGCCCCATCACCCCTAGCCCACCGCCCATAACAGAGAGCACCGCCAGCCCAGCCGCTACACGGCCATCTTCAGCGCGGGCTACACCTGTATTAGGAAAGTCTTTTTTCATGTgggttcattcattcattccctccccccacccctccttctatccctccaaTCAGTctgtgtgtcaaggtgtggggcCCCTGGGTTTCCAGGTGTCTCTGGAGGAGCAGGCCTTCCTGCTGCtgacagacccagagagacagaccatGGGCTACTACCTGCGGGAGTACCAGGAGGGACACATCGGCCTGGAGCCCCTGACCATGGCCCTGTTTGAGCTCTTCAATACTCGTGCCAAGtTGTCCCTGCTATCTGAGGTGCGTAGTCAGGTAGCTCCCCAGGAACTGGAGCTGTATGATGGCCTGGTGCTGCACCGCGAGAGGGAGGCTCTGAAGGCCTGGCACGGAGGAATAGGATCCCTACACCCTGTGCACCCATACAGCCGCTGTCTACACGCTGAGCCCTCAGCCAGCCACATCCACTCCAACCCGGCCACTCTCTGCTCTGCCAAGaaGGAGTGCTCACATGGTGACATTGTACAGCAAGATCCAGGGGCAACCACTAATGTCATACCTGACGTTACATTGAATGAAGTGCAGTCGACAGCTGAGTCTCCTCCGTTCTTCAAGCCGCCTCCTCCCCCCGGACCCGGACAGACCCAGCCCAGACATccgagggacagggagagggagcagtCCAAGCGCTTCTTATCCAGACACTCCCAATCTGGCCTGGTCTTTACTGCCCCCACCAGGCTGCACCAGGAATGTCACCACAAACACCTTAAAGCCTTCCAAAGCTTCTCCAACCACCAAACGTCCAACTCCCCTAGCTCTGAGCTCCATCACATCTGTCCCAACCCTGGCCATCATAATAGCTCCAACCCTGGCCATCATAATAGCTCCAACCCTGGCCATCATAACAGCTCCAACCCTGGCCATCATAACAGCTCCAACCCTGGCCATCATAACAGCTCCAACCCTGGCCATCATACTACCCCCAACCCTGGCCATCATACCACCCCCAACACTGGCCATCATACCACCCCCAACACTGGCACTGGCCATAGCGTCTATCCAAGCTCTGGCAATGACACATCCATGAACTCTCTTCACCACACCTGCCAAAGCTCCCTCCACATCTCCACAACTACCTCCTCCGACCACCACACCCCCCAAACACACCACGGCTGCTCCAGCTCCGGCCACCATTCCTGCCCTGGCTCCCCTCATCCCAAGCACTCTGGTCCTCAGAACAAGGACACATTCATCAAGCTTCCCATCTTCAGATCCTGCTCCCATGAGAAGCCTCTGTCAGACAGTGGTCAGACTCTGAGTGAGGACAGTGGGGTGGACATTGCTGAGGCACGAGGGCTCAGTAAAGACAGCAATCCTTGGCCAACTAAGAACCAGGCCAGCCAGGCCACACAAGGGCCCCATGGGGCCCAGGGGTCTGCAGTACTGGCATCCAAACAGCAGCCCGGCTCTCCAGTGCCCATACTTACTCTGGTACGTGTGGTAAAGAATGCCAACACTCTGGGCATTGCTATAGAGGGAGGTGCAAACACACGGCAGCCACTGCCACGCATCGTCACcgtacagaagggGGGCTCGGCACACAGTTGTGGGCAGCTGAAGGTGGGACAGGTGATTCTGGAGGTGAACGGGGTCTCCCTGAGGGGTAGAGAGCACCGGGACGCTGCTCGCATCATCGCTGAGGCCTTCAAGACCAAAGAGAAGGACCACATTGACTTCCTGGTTACCGAGTTTAACACAGCCCTACTGCAAGGCCTTTAGCGGGGTCGTATTTAGGCTCCACACAGAAGAAAAGAGACTGAAGGGACCACCTGAACAAGAAGGGACCTCCTGAACTAATGCTTGTTCCCATTTTCCTGCAGGGGCTTCAGCAGGACTTTGCACTTTAGAGAGCTGGAAcagatggaggaaggaggagaaagagagaacggaaggAGGGAGAAGTTTGATGGAGTGTTGCACCTGGGGACAAAATAAAGACAATCCGTTATTCTCCTGTAAGCCCCTTCTCCCTTCCCACATTGTTGTCCCTATATACCAACTTACCAGGCTGGCCATGTAGTGTTAAAAAGCTAAGACATCCTGCCTTAAGAAGAACCCACCGATagaacacacagttgaagtcggaagtttacatacacttaggtttgtgTCATTAAAACtgatttttcaaccactccacacatttcttgttaacaaactgtagttttgacaagtcggttaggaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1154542 lncRNA downstream 1324 72761170 ~ 72761676 (-) True G1015071
TU1154543 lncRNA downstream 2279 72760284 ~ 72760721 (-) True G1015072
TU1154541 lncRNA downstream 5740 72756514 ~ 72757260 (-) True G1015070
TU1154540 lncRNA downstream 6831 72755865 ~ 72756169 (-) True G1015069
TU1154539 lncRNA downstream 7457 72755296 ~ 72755543 (-) True G1015068
TU1154640 lncRNA upstream 64369 72906786 ~ 72908763 (-) True G1015154
TU1154800 lncRNA upstream 305061 73147478 ~ 73147750 (-) True G1015279
TU1154898 lncRNA upstream 312987 73155404 ~ 73155865 (-) True G1015371
TU1154905 lncRNA upstream 321670 73164087 ~ 73164363 (-) True G1015378
TU1154917 lncRNA upstream 337035 73179452 ~ 73179677 (-) True G1015387
XM_021622109.2 mRNA downstream 58596 72650659 ~ 72704404 (-) True LOC110536362
XM_021622107.2 mRNA downstream 115680 72597787 ~ 72647320 (-) True LOC110536361
XM_036936260.1 mRNA downstream 178939 72452920 ~ 72584061 (-) True LOC110536359
XM_036936261.1 mRNA downstream 178940 72452920 ~ 72584060 (-) False LOC110536359
XM_036936262.1 mRNA downstream 178940 72452920 ~ 72584060 (-) False LOC110536359
XM_036936266.1 mRNA upstream 7273 72849690 ~ 72859975 (-) True LOC110536649
XM_021622113.2 mRNA upstream 32059 72874476 ~ 72883881 (-) False LOC110536363
XM_021622110.2 mRNA upstream 32059 72874476 ~ 72883882 (-) False LOC110536363
XM_021622111.2 mRNA upstream 32059 72874476 ~ 72883882 (-) False LOC110536363
XM_021622114.2 mRNA upstream 32059 72874476 ~ 72883882 (-) False LOC110536363
TU1154017 other downstream 313660 72446654 ~ 72449340 (-) True G1014639
TU1153754 other downstream 403495 72359285 ~ 72359505 (-) True G1014411
TU1153293 other downstream 766312 71996081 ~ 71996688 (-) True G1013960
TU1152952 other downstream 1247566 71497308 ~ 71515434 (-) True G1013669
TU1152021 other downstream 1872009 70884476 ~ 70890991 (-) True G1012814
TU1156448 other upstream 1461233 74303650 ~ 74306809 (-) True rnft2
TU1157097 other upstream 2047982 74890399 ~ 74891140 (-) True G1017417
TU1157964 other upstream 2526031 75368448 ~ 75368826 (-) True G1018159
TU1158883 other upstream 3401299 76243716 ~ 76246887 (-) True ckap2l
TU1159078 other upstream 3702691 76545108 ~ 76545741 (-) True G1019056

Expression Profile