RNA id: TCONS_00038972


Basic Information

Item Value
RNA id TCONS_00038972
length 584
RNA type processed_transcript
GC content 0.50
exon number 3
gene id XLOC_019807
representative True

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 40053666 ~ 40083567 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgatgtaagtacatagtagttagggacacctaatataaagtgggaccaaaactgTAACACTGAATTCTCAGTATTTTCATCTAACTAAAGATGCACTGTAGGCCTATATTCTTGTGAGGTGTTTTTGTCTGCAGGAGGCTGGATGTGCATATGTTGTGGTACTGATGGCAGTTTACTGGTGTACAGAGGTGCTGCCGCTGGCTGTCACTGCTCTCCTGCCCGCTGTGCTCTTTCCCCTCTTCAGAATCATGGAGTCCAAAGACGTATGTATGCAGTACCTTAAGGACACTAACATGCTGTTTCTGGGTGGCCTGATGGTGGCCGTGGCTGTCGAACACTGGAATCTGCACAAGCGGATCGCCCTGCGGGTGCTGCTCCTTGTGGGGGTTCGACCAGCTCTGTTAATGTTGGGCTTCATGGGTGTAACAGCTTTCCTCTCCATGTGGATCAGTAACACGGCCACAACAGCCATGATGGTGCCCATCGTTCAGGCAGTTCTCGAGCAGCTCAACAACACAGCACAACAAGAACAAAGCTCCATACctgagaccgaggaaaagagcaCTGAGAAACAGCCTGAGAGC

Function

GO:

id name namespace
GO:0098656 anion transmembrane transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0015746 citrate transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function
GO:0017153 sodium molecular_function
GO:0015137 citrate transmembrane transporter activity molecular_function
GO:0015141 succinate transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4628 Predicted to enable citrate transmembrane transporter activity; sodium:dicarboxylate symporter activity; and succinate transmembrane transporter activity. Acts upstream of or within citrate transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in female organism. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 25. Orthologous to human SLC13A5 (solute carrier family 13 member 5).

Ensembl:

ensembl_id ENSDART00000131315

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039260 lncRNA downstream 153507 39923770 ~ 39924444 (-) True XLOC_019802
TCONS_00039259 lncRNA downstream 165844 39905903 ~ 39912107 (-) True XLOC_019801
TCONS_00039258 lncRNA downstream 414572 39653591 ~ 39663379 (-) True XLOC_019800
TCONS_00039257 lncRNA downstream 473339 39603566 ~ 39604612 (-) True XLOC_019798
TCONS_00039688 lncRNA downstream 715775 39359151 ~ 39362176 (-) True XLOC_019794
TCONS_00038976 lncRNA upstream 75936 40157865 ~ 40160887 (-) False XLOC_019808
TCONS_00038979 lncRNA upstream 85138 40167067 ~ 40174646 (-) False XLOC_019808
TCONS_00038977 lncRNA upstream 85138 40167067 ~ 40174647 (-) False XLOC_019808
TCONS_00039689 lncRNA upstream 167182 40249111 ~ 40250025 (-) False XLOC_019809
TCONS_00039261 lncRNA upstream 167182 40249111 ~ 40250025 (-) True XLOC_019809
TCONS_00038969 mRNA downstream 28309 40045224 ~ 40049642 (-) True XLOC_019806
TCONS_00038968 mRNA downstream 37773 40021263 ~ 40040178 (-) True XLOC_019805
TCONS_00038967 mRNA downstream 62421 39992151 ~ 40015530 (-) True XLOC_019804
TCONS_00038966 mRNA downstream 146551 39925379 ~ 39931400 (-) True XLOC_019803
TCONS_00038965 mRNA downstream 407576 39645762 ~ 39670375 (-) False XLOC_019800
TCONS_00038973 mRNA upstream 57107 40139036 ~ 40173821 (-) False XLOC_019808
TCONS_00038974 mRNA upstream 58586 40140515 ~ 40174676 (-) False XLOC_019808
TCONS_00038975 mRNA upstream 58586 40140515 ~ 40174677 (-) False XLOC_019808
TCONS_00038978 mRNA upstream 85156 40167085 ~ 40174647 (-) True XLOC_019808
TCONS_00038980 mRNA upstream 166191 40248120 ~ 40250500 (-) False XLOC_019809
TCONS_00038955 other downstream 810645 39267225 ~ 39267306 (-) True XLOC_019791
TCONS_00038943 other downstream 1347933 38727099 ~ 38730018 (-) False XLOC_019784
TCONS_00038929 other downstream 2014637 38063197 ~ 38063314 (-) True XLOC_019777
TCONS_00038902 other downstream 3004871 37072951 ~ 37073080 (-) True XLOC_019765
TCONS_00038875 other downstream 5541577 34430460 ~ 34536374 (-) True XLOC_019748
TCONS_00038990 other upstream 321331 40403260 ~ 40411647 (-) True XLOC_019813
TCONS_00039012 other upstream 1169502 41251431 ~ 41251548 (-) True XLOC_019825
TCONS_00039016 other upstream 1269616 41351545 ~ 41351665 (-) True XLOC_019828
TCONS_00039031 other upstream 1781725 41863654 ~ 41873097 (-) True XLOC_019836
TCONS_00039061 other upstream 3308472 43390401 ~ 43393079 (-) True XLOC_019853

Expression Profile

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