RNA id: TU1160563


Basic Information

Item Value
RNA id TU1160563
length 504
RNA type TUCP
GC content 0.54
exon number 4
gene id ccdc125
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 77619098 ~ 77644804 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggcagtaaggatgacaaagcgttatattgatagctggAGGGCCATggcaggaggatggaggaggcGTTGCTGATGGCGGACGCATTTCGGATCGCCTTCGAACAGCAGCTCAGGAGGCGCAGCGATCACTTCCTGGTTCTGGCCGGGACAGACAGGAACAAGTCCCGCCCACTAAGGCCAGAAGGCAAGGATAAGACAGCATCTCTCAGTGTGGCTCAGAGACTAAGAGGACTGCTGCCGTCCAGCACAGAGATCACAGACGACCCCACAGAGACTCTGCACAAACTCCTCGACCTGCTGAGTGATAAGGAAGAAGCTCTAGCTCACCAGAGGAAGGTTAGCTTCATGCTAGCCCGCAACACAGAGGAACTAGAGAGACGGTTGAAGACAGACAATATGCTGCAGACACAGGTCACATCATCACCACACTGTTCTTCAGAGACAGACACATGCAAGTCCAACCATGCAGGCACAAGCGTCTGCAGTTCCAACCATGTCCAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1160223 lncRNA downstream 20249 77598484 ~ 77599834 (-) True G1019938
TU1160224 lncRNA downstream 21893 77595666 ~ 77598190 (-) True G1019939
TU1160210 lncRNA downstream 43419 77575871 ~ 77576664 (-) False G1019926
TU1160208 lncRNA downstream 46610 77572558 ~ 77573473 (-) True G1019925
TU1160195 lncRNA downstream 67952 77542344 ~ 77552131 (-) False G1019913
TU1160567 lncRNA upstream 35381 77662947 ~ 77664521 (-) True G1020232
TU1160614 lncRNA upstream 66691 77694257 ~ 77694488 (-) True G1020271
TU1160616 lncRNA upstream 69335 77696901 ~ 77697948 (-) True G1020273
TU1160635 lncRNA upstream 110425 77737991 ~ 77739799 (-) True G1020291
TU1160640 lncRNA upstream 120860 77748426 ~ 77748732 (-) True G1020296
XM_036936425.1 mRNA downstream 1824 77605168 ~ 77618259 (-) True fam151b
XM_036936419.1 mRNA downstream 88199 77529680 ~ 77531884 (-) True LOC118937407
XM_036936418.1 mRNA downstream 104153 77481872 ~ 77515930 (-) True LOC110536424
XM_036936420.1 mRNA downstream 145061 77468296 ~ 77475022 (-) True LOC118937408
XM_036936421.1 mRNA downstream 145397 77468296 ~ 77474686 (-) False LOC118937408
XM_021622194.2 mRNA upstream 18396 77645962 ~ 77659863 (-) True rad17
XM_036936439.1 mRNA upstream 73367 77700933 ~ 77725335 (-) False erap1b
XM_036936438.1 mRNA upstream 73367 77700933 ~ 77725921 (-) True erap1b
XM_036936443.1 mRNA upstream 132363 77759929 ~ 77778022 (-) True LOC110535124
XR_005034746.1 mRNA upstream 150495 77778061 ~ 77821554 (-) False LOC118936501
TU1160211 other downstream 43419 77575871 ~ 77576664 (-) True G1019926
TU1159523 other downstream 663266 76955366 ~ 76956817 (-) True G1019413
TU1159078 other downstream 1074342 76545108 ~ 76545741 (-) True G1019056
TU1158883 other downstream 1373196 76243716 ~ 76246887 (-) True ckap2l
TU1157964 other downstream 2251257 75368448 ~ 75368826 (-) True G1018159
TU1161240 other upstream 857595 78485161 ~ 78487183 (-) True LOC110536450
TU1161585 other upstream 926062 78553628 ~ 78566847 (-) True G1021084
TU1161639 other upstream 1006055 78633621 ~ 78634401 (-) True G1021129
TU1162332 other upstream 1794944 79422510 ~ 79423479 (-) True G1021664
TU1162558 other upstream 2077653 79705219 ~ 79705722 (-) True G1021853

Expression Profile