RNA id: XM_036936460.1


Basic Information

Item Value
RNA id XM_036936460.1
length 2477
RNA type mRNA
GC content 0.52
exon number 13
gene id cnot6l
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 78774565 ~ 78797212 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACTTTGCATGCCGGTGGGGGGCAGACGGATAGGGCAGACGGTACGAGCTGGAAGCCATGTTTGTTGTTCCTCCTTCTGCCACTTCGGAGTTCGGTACGTTCAGGGTCTGAACGTTCAAGAACTCCGTCTGCATGTCTTTATTATCAACAATATCGCCACTAAATATTCTCTACCACCCTCCGAATGCAGATTAACAGGTATGCCAAAGGAAAAATATGATTCCCCGGATCCTCGCCGATTATACACCATCATGTCAGCTGAGGAGGCAGCCAACGGGAAGAAGTCGCACTGGGCcgagctggagatatcaggTCGGGTCAGAAGTCTGAGCAGTTCTCTGTGGACTCTCACCCACCTGACGGCTCTACACATCAACGACAACAACCTGAGTCGCATCCCGCCCGACATCGCCAAGCTGCCACACCTGGCCTACCTGAACCTGTCGTCCAACAAGCTCCGCAGCTTGCCCGCCGAACTCGGAAACATGGTGTCTCTCAGGGAGTTGCTTTTAAACAACAATCTTTTGCGAGTTCTACCTTACGAACTCGGGCGGCTGTTCCAGTTACAAACCCTGGGGCTAAAAGGTAACCCTTTGTCCCAAGACATCCTCAACCTGTACCAGGAATCAGACGGAACCAGAAAGCTCTTGAACTACATGCTTGACAATCTAGCAGTGCACCCAGAACAGCTCCCCCAGAGACCTTGGATCACCTTGAAGGAGCGGGACCCAATGATCCCTACAGccatgTTCACAGTGATGTGTTACAACGTGCTGTGTGATAAGTATGCCACTCGTCAGCTGTACGGCTACTGTCCCTCCTGGGCCCTCAACTGGGAGTACAGGAAGAAGGGCATCATGGAGGAGATCACACACTGTGAcgctgacatcatcagtctacagGAGGTGGAGACGGAGCAGTACCACGCCCTCTTCCTGGAGACTCTAAAGGACCATGGGTACGAGGGGTACTTCTGCCCAAAGTCTCGTGCCAAACTGGTCTCAGAACAGGAGAGGAAGCACGTGGACGGATGTGCTGTGTTCTTCAAGACTGAGAAATTTACTCTGGTGCAGAAACACACGGTGGAGTTCAACCAGGTTGCCATGGCAAACTCTGAGGGTTCAGAGGTCATGTTGAACAGGGTCATGACCAAGGACAACATCGGGGTCGCTGTCCTACTGGAGGTCAACAAGGACATATTCTCTGGTGGCATGAAGCCTCTGCAGGAGACACAGTTCCTTCTGGTGGCTAACGCCCACATGCACTGGGACCCAGAGTTCTGTGACGTCAAGCTGATTCAGACCATGATGTTCCTGTCGGAGCTGAAGAGCATCACCGAGAGGGCGCTGAGCTCCGTGGCAACAGGCTCCCCGACCTCcgacccctcctccatccctatcGTCCTCTGTGCTGACCTCAACTCCCTGCCAGACTCTGGTGTAGTGGAGTACCTGAGTAACGGTGGTGTAGCAGAGAACCATAAGGACTTCAGAGAGCTGCGCTACAACGAGGCTCTCAGCAACTTCAGCTGCCAGGGGAAGAACGGCCCATCTGACGGCAGCATCACTCACAGCTTCCAGCTGAAGAGCGCCTACCAGGGCAGCCTCATGTCTTATACCAACTACACCTATGACTTCAAGGGCGTGATCGACTACATCTTCTTCTCCAAGACTCACATGTCTGTAGCCGGCTTGCTCGGCCCCCTGGAGTCTCAGTGGTTAACGGACAACAACATCACCGGCTGTCCCCACCCCCACATCCCCTCTGACCACTTCTCTCTGCTCGCCCAGCTGGAGCTCCACCCGCCCGTCACCACCTCCCTCAACGGCCTGCACCTGCCCGTCCACAGCTGATGATCTCCTAGTCTTCCCTAGGACTTTTTATGTTTGAACAAGGTCTCCCACTCCCAAACACTGTAATTACTTCCCCAACTTcagctgtaccccccccccccttccagccCCCTTCCCCTGCACCTCTCCACATATCTAATTTAATATCACAgcctttttttcccctctctctctctctctctctctctctctctctctcatgaacaCATCCACTCTTACTTTACATTTGTATCAAAGTTAGTTTTGTAGAGCACACCTGCATTTTCTTACTTACAACAAAAACAACGTGCCTCGTTTGTACAGTATACAATCTCTCCAACAGCAGCACTGCCTAGGAAAATATGtttgcgtttacacaggcagaccaaaTCTGATCTTTTGCTACtaacttttgaccaatcagatcagaatttttttttgccaataattggtCAAAAGATCAGAATGGGCTGCCTGTTTTTAAACCCAGCCTGAGTAGCTCAGACTAACCATGCGCCAACATCTATCCATCCAttcttccatccctccattcatccctccctccattcatccacccctccctccatctctccatccatcccttcatcatccatctctccatcccatcatccctccatccatct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1161732 lncRNA downstream 6665 78767663 ~ 78767900 (-) True G1021199
TU1161731 lncRNA downstream 9335 78764977 ~ 78765230 (-) True G1021198
TU1161730 lncRNA downstream 9625 78764697 ~ 78764940 (-) True G1021197
TU1161727 lncRNA downstream 16773 78757585 ~ 78757792 (-) True G1021194
TU1161726 lncRNA downstream 18463 78755806 ~ 78756102 (-) True G1021193
TU1161737 lncRNA upstream 513 78797725 ~ 78798205 (-) True G1021204
TU1161745 lncRNA upstream 12079 78809291 ~ 78819495 (-) True G1021211
TU1161769 lncRNA upstream 62842 78860054 ~ 78860624 (-) True G1021235
TU1161828 lncRNA upstream 182402 78979614 ~ 78979933 (-) True G1021290
TU1161837 lncRNA upstream 205046 79002258 ~ 79003061 (-) True G1021299
XM_021622215.2 mRNA downstream 287363 78485116 ~ 78487202 (-) False LOC110536450
XM_036936451.1 mRNA downstream 298245 78468533 ~ 78476320 (-) True LOC110536449
XM_021622213.2 mRNA downstream 341079 78414793 ~ 78433486 (-) True LOC110536447
XR_005034746.1 mRNA downstream 953011 77778061 ~ 77821554 (-) False LOC118936501
XR_005034747.1 mRNA downstream 953011 77778061 ~ 77821554 (-) False LOC118936501
XM_036936467.1 mRNA upstream 397661 79194873 ~ 79224499 (-) True LOC110536655
XM_036936468.1 mRNA upstream 462099 79259311 ~ 79265496 (-) False LOC110535130
XM_036936469.1 mRNA upstream 462099 79259311 ~ 79265496 (-) True LOC110535130
XM_036936476.1 mRNA upstream 1083806 79881018 ~ 79984912 (-) False LOC110535133
XM_036936474.1 mRNA upstream 1083806 79881018 ~ 79984913 (-) False LOC110535133
TU1161639 other downstream 140164 78633621 ~ 78634401 (-) True G1021129
TU1161585 other downstream 207718 78553628 ~ 78566847 (-) True G1021084
TU1161240 other downstream 287382 78485161 ~ 78487183 (-) True LOC110536450
TU1160563 other downstream 1146999 77620083 ~ 77627566 (-) True ccdc125
TU1160211 other downstream 1197901 77575871 ~ 77576664 (-) True G1019926
TU1162332 other upstream 625298 79422510 ~ 79423479 (-) True G1021664
TU1162558 other upstream 908007 79705219 ~ 79705722 (-) True G1021853
TU1162808 other upstream 1101717 79898929 ~ 79900131 (-) True LOC110535133
TU1163264 other upstream 1358285 80155497 ~ 80159395 (-) False G1022395
TU1163266 other upstream 1358285 80155497 ~ 80159395 (-) False G1022395

Expression Profile