RNA id: XM_036936467.1



Basic Information


Item Value
RNA id XM_036936467.1
length 1526
RNA type mRNA
GC content 0.51
exon number 3
gene id LOC110536655
representative True

Chromosome Information


Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 79194873 ~ 79224499 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCTGGCACGGAGGAGTCCTTTGGAAGGAAAATTTGCGCTGTCAGTTTTGTCCTATTTTTGCCTCATAGTTGCTGTTGGCAGCGCCGATCGATATTGAGCAGGGGCTGGTGTTTTTTAGAGAAAAAATACGGATGAGAGAAAGCGTCCCTTCAGAATTCAGTCATGCATTAAGCAGTGACATCATTTTGTTGGATATAAATATCTCGGTGTGTGCCAGGCCAGCGGAGCCACTCCAGCACCCCCAGCAGCAGCTACACACACCGACCACCGCGCAGCACGGCTGGGGTAATGCCCACGAGCGTCTTCGGGAACTGGATGTGTTTCTAGTGTGCGCACGGTTCCTCGTGCACTGGCACTACACACAGAGCTTTTCGGTGAGCTCGGGATACACCACAACAACGCAAtgatagaagaagaagaataagaaGTGGCCTAGCGGAGCCAGAGGACTGACAGAGTTTCCTTTTTGGAAGAATGCATGTTCCTCTTTCCCTTTTTACCTTTGCTCTGCTGCAGTTGATTAGCGCCGCCGTGGTCGCCGTCTCCACCGCCGTAGTCGCTGGATCCCTTGGACACGTTTCCTTGGAAGACCAACTTCTGGAAGCGGGTGCAGTCAGTGGTTCTGGACGCAGGACTTGCAGATTGTACTGTCGGGTTGGCATTGGTTTTCATCTTCAGATACACACCGACGGACGAGTTAACGGCAGTCATGAACCCAATCGGTTAAGTGTCCTGGAGCTCTTTGCTGTATCTCAGGGTGTCATCGGTATCCGAGGAGTCTACAGTAACAAATTCCTGTCCATGAACAAGAGAGGAAGGCTTCACGCCGTGGAGAGGTTCACGGACGACTGTAGATTCCGGGAGCGTTTCCAAGAGAACAGTTACAACACGTACGCCTCGGTGTTGCACCGGAACCACCGGACGGGACGGGACTGGTACGTGGCCCTCAACAAAAGAGGCAAAGCCAAGATGGGCTCCAGCCCCAGGGTCAAATCACAGCACGTCGCCACGCACTTCCTCCCCAGGCTCAACCTGCACGACCTGCAGAGCGAACGAGGCTTCACCATCACAGACAGGAgtaaagagaggaggaaaagcCTCCCGGTGGCACCTCAACCGCCCTCGCAGCCGAAGATGAACCTTAATACAGGAACAGGGAAGAGGGTGCAGACTGTCAAGTACTGGCCAAAGTTTCGGTTTGGATAGACTGAGGAGAGGTTCTTGTCAAGGAAGACTGTAGGTTGAGTGCTGTAGCCTGGAATCAATGATAGGATTCAGGATTGCCAGACTGCTGTAGTGAAACAACGGTGAAACAGAGTTCCAGGCTATGTGGATTGGATTAGGGCTGAATAGCGGGAACTGTGTTACCGAGATTAACAGAGATTTCCCTCCTAAAACCACTCccttttcccaggataaataactGCAAAAAACAGTcaattatacactgaacaaaaatgttaaTGCagcacgcaacaatttcaaagattttattgagttacagttcatagaaggtaaccagtcca

Function


GO:

id name namespace
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0005576 extracellular region cellular_component
GO:0005104 fibroblast growth factor receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K04358 FGF; fibroblast growth factor

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1161990 lncRNA downstream 1986 79192578 ~ 79192887 (-) True G1021410
TU1161989 lncRNA downstream 2401 79192105 ~ 79192472 (-) True G1021409
TU1161987 lncRNA downstream 3513 79190999 ~ 79191360 (-) True G1021407
TU1161983 lncRNA downstream 7042 79186291 ~ 79187831 (-) False G1021406
TU1161984 lncRNA downstream 7042 79186291 ~ 79187831 (-) False G1021406
TU1162080 lncRNA upstream 13001 79237500 ~ 79237821 (-) True G1021470
TU1162086 lncRNA upstream 20807 79245306 ~ 79245599 (-) True G1021473
TU1162107 lncRNA upstream 57828 79282327 ~ 79284036 (-) False G1021486
TU1162109 lncRNA upstream 57828 79282327 ~ 79284036 (-) False G1021486
TU1162113 lncRNA upstream 57828 79282327 ~ 79284036 (-) True G1021486
XM_036936460.1 mRNA downstream 397661 78774565 ~ 78797212 (-) False cnot6l
XM_036936458.1 mRNA downstream 397661 78776091 ~ 78797212 (-) False cnot6l
XM_036936459.1 mRNA downstream 397661 78781063 ~ 78797212 (-) True cnot6l
XM_021622215.2 mRNA downstream 707671 78485116 ~ 78487202 (-) False LOC110536450
XM_036936451.1 mRNA downstream 718553 78468533 ~ 78476320 (-) True LOC110536449
XM_036936468.1 mRNA upstream 34812 79259311 ~ 79265496 (-) False LOC110535130
XM_036936469.1 mRNA upstream 34812 79259311 ~ 79265496 (-) True LOC110535130
XM_036936476.1 mRNA upstream 656519 79881018 ~ 79984912 (-) False LOC110535133
XM_036936474.1 mRNA upstream 656519 79881018 ~ 79984913 (-) False LOC110535133
XM_036936475.1 mRNA upstream 656519 79881018 ~ 79984913 (-) False LOC110535133
TU1161639 other downstream 560472 78633621 ~ 78634401 (-) True G1021129
TU1161585 other downstream 628026 78553628 ~ 78566847 (-) True G1021084
TU1161240 other downstream 707690 78485161 ~ 78487183 (-) True LOC110536450
TU1160563 other downstream 1567307 77620083 ~ 77627566 (-) True ccdc125
TU1160211 other downstream 1618209 77575871 ~ 77576664 (-) True G1019926
TU1162332 other upstream 198011 79422510 ~ 79423479 (-) True G1021664
TU1162558 other upstream 480720 79705219 ~ 79705722 (-) True G1021853
TU1162808 other upstream 674430 79898929 ~ 79900131 (-) True LOC110535133
TU1163264 other upstream 930998 80155497 ~ 80159395 (-) False G1022395
TU1163266 other upstream 930998 80155497 ~ 80159395 (-) False G1022395

Expression Profile