RNA id: TU1167230


Basic Information

Item Value
RNA id TU1167230
length 3875
RNA type TUCP
GC content 0.46
exon number 5
gene id ypel1
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 83873900 ~ 83903039 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTATCATCACACAAAAAACACAACTCATCCAATTGCAAGAATTGATCCTAGAATATACTGAAGAATCGTGCGTGAAGTCATTATTTCATCTCTAGTGCTAAACCTCGCCGAGAACAAAACAACACGACACGGATTTGAATTCCATTCCATATATTGGACAAGCTGCAGTAGGGACGGGATAGCCTCCTGCCCAGCTGACGCCGGCGGTGACCTAGCTACATGACAATTAACATCATCCAGAAAACCAAGCCCGCTAATTAAACTGCACAGTTTTTTATTCGGGACTTTAAACGTGTTGTTCCGACAGTGTAGGCAACCTACTGGATAGCAGGAACCAGCCTAGACAAGGCTACTCTTCATCTCTCCTTTAACTGCCCCAGTCCGCTGTGTTATTTGTGCATGGATTGAATCACTTGAGGCTCAGTCGGAATCTGCAATGATTTGCTGAGACTGGAGAAAGACCCGAGCCGACCGTGTTGAAGTCTAAAAGGATGTACAGATAGGACGGAGTTTGTTTGTGTGGAACCCGGACCCGCATGCTGCTGTTCAGCCGTAGTCTTTTAGCCAGATCAGACTAGGCCAACAGTATCTCCTTCATTATTGAGTTACCTGCACAGTCGGGTATTGAGTTAGTTACCTGCACCGCTGGGCCGAATGGAAACATGAGTGTAACACAGTGAGGTGACGTCTCCGTCTTTGGGGCCGTGGCAGCCCGGGCACAGACTGTGTTGTGAATGTGACATGCAGCTTCAGCGGAGTAATTATTACCTCCGCTTCCTACGTTCAAACGGGAATAAAACATTGTTTTGTGTGTAGTTTCCTCGTGGTTGCTGTGTGGAGCCTGCCGCCACACACCCACTCCTCAACAACGACGGCTTTTGCTTGCATCTTCCAGTGCTTCTTCTGTCAGCAAGTTCAGCAGAGCTGCTGCTCGTCCGCCGCTAGCCCGGACGCCGCAGCCCCCGGCACATCAGCCAATCACAGCCCAGAGCCCCGCCCATGTGACATGGTGAAGATGACCAAGTCGAAGACGTTTCAGGCCTACCTGCCCTCGTGTCATCGCACCTACAGCTGTATACACTGTCGGGCACACCTGGCCAACCACGACGAACTCATCTCTAAGtcATTCCAAGGAAGCCAGGGGAGAGCCTACCTCTTTAACTCTGTtgTGAACGTGGGCTGTGGGCCGGCAGAGGAGCGGGTTCTCCTAACAGGTCTACATGCCGTCGCTGACATCTACTGTGAAACCTGTAAAACCACTCTGGGATGGAAATACGAACATGCATTTGAGAGCAGTCAGAAGTACAAGGAGGGGAAGTTCATCATCGAGCTGGCTCACATGATTAAAGACAATGGTTGGGAGTGACATCGCTTCCTGTCTCCGGCCCGTTAATGACCTCTGACCTATCAGAGCTCTGGATCTATCAGACTTCACAGAGCGACAACCAATCACCATCAACCACCCACCGTGCCGCCCCCTCctaacacacgcacaaacacacccacacacacacagtccctgcTGGTTGTGAAACTGAACATGATGCTGTTGAACTGGAGAGATGACTAGCCTATTGGGGGTTGGACCTTCAGTGAAGACCATGTGATCTCACCAGCCAATGACAGACAGCTGGACTTTAATTGGCTCCTCCTTCATCAACCAGGCCCCACCCACCTCACTGGCGTTGGCACTTAGTTACACGGCTGCCATAGCGATGTGAGAGAGAGGATAACATGATAACGTTCTActaccctcttcctcctctgacccgggaggaagaggaggtgttgCAGGAAGGAAGGGGACAGGGTGGcacagtggggggggggtgtttctCCTTGTGTTTTAATCTTTGATTTATTCGTGAATATATTTTtctttttcaatattttttttcagtCTTTGATCTTTAATGATGACTTCACTGTGTGGGACGTCCCGGTAACACCCCAAAACGTACCCCGAGCAGAGAGGCGGGGATAGATTGATATTATATGTAGATAGATATGTTTTATCCAACAGCATTGTGGCTGGCTCCATATAGCAACAGTACTATTAGATAAGGTTTAccagaggagatagagggaggactatgtttcccaaatggcactctctGCCTtggtgcactaccctatgggccctggtctaaagtagagcactatgtagggaatagggtgcaatttgggacgctgCCTAGAACAGGCTTGACAACCACAGAACACACCCACGCTTCAtattgtgttacaacctgaactAAACTAACCATCACACCCACGTAGTTCACAACCTGAACTAAACTAACCATCACACCCACGTAGTTCACAACCTGAACTAAACTAACCATCACACCCACGTAGTTCACAACCTGAACTAAACTAACCATCACACCCACGTAGTTCACAACCTGAACTAAACTAACCATTACACCCACGTAGTTCACAACCTGAACTAAACTAACCATCACACCCACGTAGTTCACAACCTGAACTAAACTAACCATCACACCCACGTAGTTCACAACCTGAACTAAACTAACCATCACACCCACGTAGTTCACAACCTGAACTAAACTAACCATGTACATGTATAGAGTGTTTTTAGAGATATGTGATATACATTTGTATGGACATTTATTCTCATGCAtgtatatacaggtaactgccaaagtaaaggaaacaccaacatatagCGTCtcaatagggcgttgggcctccaccaaTTAGAACAGCTTCAGTCCATCTTGgcattctacaagtgtctggaactctattggagggatgagacgccattcttccacgagaaattccaccattttgtgtttttttgttgatggtggtgaaaaACGCCGTCTCAGGTGTCGCTCCTGAATCTCCCGGTAGTGTTcgattgggttgagatctggtgactgagacggccacgACATAGGGTTTTtcaccctaagcatgatgggatgttaattgcttaattaactcaggaaacaCCAGCTTTCAATCCCTCATTTCCTCCAGTGTTTCCATTATTCTGTCAGTTCCCtgtacatatacagtatcatgtattgtATGTATATGAGTAGAATGTCTACTAGTGTGTTGCCCACCTTCAACACAGTGGCAGACTGGAAGGCAGATACCTAATTTGTACTTTGCAGAGGCCTTTGGTTCATAGGTTTAGAGGCaaaagtctgtctgtctatctgtctcttttAAGGCCTTTCCTCCGATGATTAAAAGATTGTATGAGATGCTGAATGATATTGAGGGGTTGCTGGCTAGATCATCTCCATATTAGTTATTAGATCAATTAAATATCGCTGCTTTACTCGTTTCTACTCGTCACCAATCCTGCTTTACCCGTTCCTATGCTTCCCCAATCGGTGATCCGACCTAAATCAAGGGTTTATAATCTCACCCGGTTCACTTTAAGTCACTTTGAACATCCTCGGCATGAACAATGTTCCCCTTTTCCACAGAAAACGAAATAAAAATGTTCATTGCAATTCTTTGCTGCTATGAGAGAAATTACAATCCTtcatcctttctctcttcccttcgtTCTGgagatcttttttttttgttgcacttTATGCCTGGCGCACGGTCGCACggttgcttctctctctctgtgttctcgtCCTCGTCGTTAGTTTGCCTCTAAGCTGAATGAATCGTGTGCCTCTCTTCCTATTTTCTCCTGACTTTCTCCTGTGTTGTGCCGTGCACAACTCTAAACTACGAGCCACCAAAAACAGCTCAAACCCACATCGATAGATACAAATATATAGATTGGTAGATAAATACTTTACGGGTGAAAACTGAGCGTTCAATGGCTGCTGTGCCTCAAGAATAGTAGATTATATATAGGCTACACGTATCG

Function

GO:

id name namespace
GO:0031641 regulation of myelination biological_process
GO:0051898 negative regulation of protein kinase B signaling biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1167231 lncRNA downstream 103 83873310 ~ 83873797 (-) True G1025595
TU1167227 lncRNA downstream 2571 83870154 ~ 83871329 (-) False G1025593
TU1167228 lncRNA downstream 3428 83870154 ~ 83870472 (-) True G1025593
TU1167263 lncRNA downstream 12968 83860659 ~ 83860932 (-) True G1025620
TU1167262 lncRNA downstream 13829 83859860 ~ 83860071 (-) True G1025619
TU1167292 lncRNA upstream 3543 83906582 ~ 83907246 (-) True G1025642
TU1167294 lncRNA upstream 4361 83907400 ~ 83908226 (-) True G1025643
TU1167296 lncRNA upstream 6314 83909353 ~ 83909706 (-) True G1025644
TU1167297 lncRNA upstream 6777 83909816 ~ 83910315 (-) True G1025645
TU1167275 lncRNA upstream 8235 83911274 ~ 83916203 (-) True G1025630
XR_005034763.1 mRNA downstream 177294 83694680 ~ 83696606 (-) False LOC118937426
XR_005034764.1 mRNA downstream 177375 83694680 ~ 83696525 (-) False LOC118937426
XR_005034765.1 mRNA downstream 177394 83694680 ~ 83696506 (-) False LOC118937426
XM_036936539.1 mRNA downstream 512886 83341427 ~ 83361014 (-) True LOC110536498
XM_036936538.1 mRNA downstream 584951 83064063 ~ 83288949 (-) True LOC110536507
XR_005034767.1 mRNA upstream 11774 83914813 ~ 83919629 (-) False LOC110536511
XR_005034772.1 mRNA upstream 13311 83916350 ~ 83919629 (-) False LOC110536511
XR_005034768.1 mRNA upstream 13312 83916351 ~ 83919629 (-) False LOC110536511
XR_005034769.1 mRNA upstream 13312 83916351 ~ 83919629 (-) False LOC110536511
XR_005034770.1 mRNA upstream 14689 83917728 ~ 83919629 (-) False LOC110536511
TU1167110 other downstream 155292 83716077 ~ 83718608 (-) False G1025498
TU1167109 other downstream 156013 83715683 ~ 83717887 (-) False G1025498
TU1167113 other downstream 156013 83716077 ~ 83717887 (-) False G1025498
TU1167055 other downstream 247110 83621723 ~ 83626790 (-) True G1025467
TU1167071 other downstream 308326 83562302 ~ 83565574 (-) True G1025481
TU1168443 other upstream 1284287 85187326 ~ 85197500 (-) False G1026586
TU1168973 other upstream 1710313 85613352 ~ 85614375 (-) True G1026978

Expression Profile